Wall clock time and date at job start Tue Mar 31 2020 05:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50691 * 110.53544 * 2 1 4 4 C 1.38266 * 119.94858 * 92.55955 * 3 2 1 5 5 C 1.38143 * 120.05904 * 179.72608 * 4 3 2 6 6 C 1.38734 * 119.93979 * 0.56165 * 5 4 3 7 7 O 1.35904 * 120.05342 * 179.68457 * 6 5 4 8 8 C 1.42905 * 117.00078 * 0.02562 * 7 6 5 9 9 F 1.39902 * 109.46773 * 59.99727 * 8 7 6 10 10 F 1.39897 * 109.47129 * 179.97438 * 8 7 6 11 11 F 1.39901 * 109.46883 * 300.00178 * 8 7 6 12 12 C 1.38730 * 119.89192 * 359.70905 * 6 5 4 13 13 C 1.38142 * 119.94282 * 359.97438 * 12 6 5 14 14 N 1.47312 * 110.59587 * 236.99848 * 2 1 3 15 15 C 1.34523 * 106.61710 * 241.25120 * 14 2 1 16 16 O 1.21526 * 123.76908 * 180.20738 * 15 14 2 17 17 N 1.33795 * 112.46257 * 0.38884 * 15 14 2 18 18 C 1.37513 * 124.18108 * 179.86262 * 17 15 14 19 19 H 1.07992 * 119.99811 * 145.72493 * 18 17 15 20 20 C 1.38899 * 119.99517 * 325.72193 * 18 17 15 21 21 N 1.31380 * 119.99178 * 149.77280 * 20 18 17 22 22 Si 1.86794 * 120.00397 * 329.76591 * 20 18 17 23 23 H 1.48499 * 109.47290 * 266.90641 * 22 20 18 24 24 H 1.48497 * 109.47176 * 146.90329 * 22 20 18 25 25 H 1.48506 * 109.46934 * 26.90435 * 22 20 18 26 26 C 1.34768 * 111.63834 * 359.59419 * 17 15 14 27 27 O 1.21233 * 127.15626 * 180.26735 * 26 17 15 28 28 H 1.08999 * 109.46967 * 297.87523 * 1 2 3 29 29 H 1.09003 * 109.46647 * 57.86929 * 1 2 3 30 30 H 1.09000 * 109.47404 * 177.86908 * 1 2 3 31 31 H 1.08007 * 119.96553 * 359.96889 * 4 3 2 32 32 H 1.07997 * 120.03036 * 180.24979 * 5 4 3 33 33 H 1.08000 * 120.02890 * 179.97438 * 12 6 5 34 34 H 1.08004 * 119.97578 * 179.97438 * 13 12 6 35 35 H 0.96994 * 126.69200 * 61.51773 * 14 2 1 36 36 H 0.97006 * 119.99852 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3509 2.0388 1.1968 5 6 2.8409 3.3304 1.1993 6 6 3.0288 4.0019 -0.0001 7 8 3.5047 5.2749 -0.0001 8 6 3.7912 5.8604 1.2716 9 9 4.7615 5.0962 1.9288 10 9 4.2689 7.1625 1.0885 11 9 2.6243 5.8953 2.0425 12 6 2.7295 3.3720 -1.1994 13 6 2.2459 2.0780 -1.1967 14 7 2.0483 -0.7511 -1.1565 15 6 2.7640 -1.7762 -0.6600 16 8 3.3368 -2.5967 -1.3497 17 7 2.7715 -1.7939 0.6778 18 6 3.4258 -2.7376 1.4343 19 1 3.8705 -2.4594 2.3782 20 6 3.5148 -4.0486 0.9842 21 7 4.5512 -4.7866 1.3117 22 14 2.1609 -4.7625 -0.0866 23 1 1.1657 -5.4558 0.7703 24 1 2.7480 -5.7315 -1.0465 25 1 1.4924 -3.6676 -0.8348 26 6 2.0633 -0.7693 1.1923 27 8 1.8894 -0.5152 2.3649 28 1 -0.3633 0.4805 0.9084 29 1 -0.3633 0.5466 -0.8703 30 1 -0.3634 -1.0269 -0.0382 31 1 2.1996 1.5173 2.1305 32 1 3.0728 3.8187 2.1342 33 1 2.8745 3.8929 -2.1343 34 1 2.0124 1.5873 -2.1301 35 1 1.9049 -0.5443 -2.0932 36 1 4.6133 -5.7023 0.9977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071186295.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:16 Heat of formation + Delta-G solvation = -185.767159 kcal Electronic energy + Delta-G solvation = -30681.615830 eV Core-core repulsion = 25718.094947 eV Total energy + Delta-G solvation = -4963.520883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.68311 -48.41976 -48.26309 -41.95857 -40.34544 -38.26011 -37.44501 -35.57531 -34.49679 -32.32790 -31.40252 -30.84938 -29.17940 -26.39902 -26.03596 -24.04246 -23.24468 -22.56476 -21.50336 -19.96698 -19.83486 -19.38913 -19.25438 -17.92606 -17.26272 -16.85499 -16.48729 -15.94476 -15.47281 -15.40461 -15.14808 -14.94158 -14.80335 -14.73502 -14.67092 -14.60792 -14.38512 -14.35178 -14.08170 -13.76346 -13.62129 -13.43294 -13.17293 -12.94389 -12.69024 -12.54052 -12.26391 -12.06997 -11.63215 -11.35373 -11.10340 -10.78751 -10.21626 -9.73179 -9.51328 -9.24902 -9.15209 -8.85326 -8.59484 -8.41472 -6.59471 -4.29993 0.94165 1.12194 1.23271 2.37565 2.59904 3.05332 3.28409 3.32414 3.34307 3.40862 3.52430 3.75566 3.95443 4.00652 4.32692 4.39916 4.49188 4.53058 4.69404 4.92404 4.95916 5.11257 5.21049 5.31768 5.58939 5.62587 5.77156 5.87350 6.01850 6.08711 6.19498 6.21948 6.39452 6.72548 7.21042 7.34815 7.68649 8.05498 8.45055 8.57632 9.02918 9.38404 10.46468 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.003185 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.169217 B = 8790.459437 C = 9116.183843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.159 3.841 3 C -0.095 4.095 4 C -0.063 4.063 5 C -0.185 4.185 6 C 0.101 3.899 7 O -0.312 6.312 8 C 0.603 3.397 9 F -0.163 7.163 10 F -0.134 7.134 11 F -0.165 7.165 12 C -0.124 4.124 13 C -0.065 4.065 14 N -0.734 5.734 15 C 0.682 3.318 16 O -0.541 6.541 17 N -0.409 5.409 18 C -0.374 4.374 19 H 0.117 0.883 20 C 0.101 3.899 21 N -0.825 5.825 22 Si 0.913 3.087 23 H -0.292 1.292 24 H -0.280 1.280 25 H -0.271 1.271 26 C 0.488 3.512 27 O -0.494 6.494 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.157 0.843 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.426 0.574 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 19.645 -4.460 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.068 3.932 3 C -0.097 4.097 4 C -0.081 4.081 5 C -0.204 4.204 6 C 0.059 3.941 7 O -0.232 6.232 8 C 0.513 3.487 9 F -0.145 7.145 10 F -0.116 7.116 11 F -0.147 7.147 12 C -0.143 4.143 13 C -0.083 4.083 14 N -0.399 5.399 15 C 0.386 3.614 16 O -0.417 6.417 17 N -0.141 5.141 18 C -0.497 4.497 19 H 0.135 0.865 20 C -0.113 4.113 21 N -0.455 5.455 22 Si 0.741 3.259 23 H -0.220 1.220 24 H -0.206 1.206 25 H -0.196 1.196 26 C 0.276 3.724 27 O -0.370 6.370 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.269 0.731 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.114 19.161 -4.238 20.555 hybrid contribution -0.419 -0.155 -0.686 0.819 sum -6.533 19.006 -4.924 20.692 Atomic orbital electron populations 1.21930 0.90240 1.03690 1.03724 1.20124 0.96433 0.89378 0.87296 1.19646 1.01730 0.94420 0.93897 1.21375 0.93835 0.93211 0.99696 1.21511 1.05272 0.97211 0.96402 1.18748 0.98576 0.80981 0.95763 1.86388 1.80378 1.29431 1.26977 1.19357 0.75197 0.76505 0.77690 1.93328 1.64062 1.75692 1.81398 1.93298 1.88034 1.35165 1.95054 1.93307 1.49234 1.96176 1.75951 1.20293 1.03321 0.95005 0.95641 1.20705 0.97010 0.92743 0.97851 1.45640 1.56552 1.29885 1.07832 1.16136 0.79838 0.81956 0.83476 1.90749 1.48476 1.40944 1.61487 1.42049 1.41483 1.25331 1.05201 1.18843 1.36321 0.88030 1.06549 0.86523 1.25165 0.95411 0.95809 0.94934 1.69849 1.24257 1.09840 1.41583 0.86301 0.81542 0.78780 0.79240 1.22021 1.20572 1.19568 1.20342 0.79282 0.83915 0.88862 1.90576 1.59133 1.70829 1.16502 0.89986 0.90949 0.90995 0.82559 0.84693 0.84250 0.84616 0.73105 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.96 37.16 0.33 -1.40 16 2 C 0.16 2.53 1.16 -133.25 -0.15 2.38 16 3 C -0.10 -1.34 4.89 -104.60 -0.51 -1.85 16 4 C -0.06 -0.91 9.17 -39.61 -0.36 -1.28 16 5 C -0.19 -2.40 8.26 -39.43 -0.33 -2.72 16 6 C 0.10 1.22 6.48 -39.22 -0.25 0.96 16 7 O -0.31 -3.50 10.37 -19.44 -0.20 -3.70 16 8 C 0.60 6.20 3.42 101.05 0.35 6.55 16 9 F -0.16 -1.80 15.56 2.25 0.04 -1.77 16 10 F -0.13 -1.27 17.53 2.25 0.04 -1.23 16 11 F -0.16 -1.67 15.56 2.25 0.04 -1.64 16 12 C -0.12 -1.33 9.99 -39.43 -0.39 -1.72 16 13 C -0.06 -0.73 9.35 -39.60 -0.37 -1.10 16 14 N -0.73 -12.23 5.37 -54.03 -0.29 -12.52 16 15 C 0.68 15.63 6.42 -88.02 -0.57 15.07 16 16 O -0.54 -14.07 13.67 5.34 0.07 -13.99 16 17 N -0.41 -10.07 2.38 -65.57 -0.16 -10.23 16 18 C -0.37 -10.55 9.92 -14.76 -0.15 -10.70 16 19 H 0.12 3.49 8.06 -52.49 -0.42 3.06 16 20 C 0.10 2.86 4.86 -17.50 -0.09 2.77 16 21 N -0.82 -23.90 13.95 55.49 0.77 -23.12 16 22 Si 0.91 22.95 25.83 -169.99 -4.39 18.56 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.27 -6.64 5.33 56.52 0.30 -6.34 16 26 C 0.49 10.37 6.41 -10.55 -0.07 10.31 16 27 O -0.49 -11.12 15.66 5.60 0.09 -11.04 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.16 2.50 5.61 -52.48 -0.29 2.21 16 32 H 0.14 1.61 5.10 -52.49 -0.27 1.34 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.17 7.11 -52.48 -0.37 0.80 16 35 H 0.43 5.43 8.19 -40.82 -0.33 5.10 16 36 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -32.16 319.58 -4.35 -36.52 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.62 Total: 2.08 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: -2.56 Total: 17.27 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.33 Total: -45.87 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.04 Total: -28.73 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.11 Total: -4.64 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.39 Total: 18.56 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.16 -4.35 -36.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071186295.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.250 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds