Wall clock time and date at job start Tue Mar 31 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35717 * 116.99879 * 2 1 4 4 C 1.39180 * 119.86425 * 0.02562 * 3 2 1 5 5 C 1.37541 * 120.24464 * 180.02562 * 4 3 2 6 6 C 1.39861 * 119.95789 * 359.97438 * 5 4 3 7 7 C 1.47302 * 120.13129 * 179.97438 * 6 5 4 8 8 O 1.21615 * 120.00261 * 145.77828 * 7 6 5 9 9 N 1.34784 * 120.00048 * 325.76816 * 7 6 5 10 10 C 1.46499 * 119.99843 * 6.63383 * 9 7 6 11 11 C 1.50699 * 109.47412 * 104.22793 * 10 9 7 12 12 H 1.08004 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00168 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00195 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99952 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46984 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47007 * 120.00263 * 15 13 11 18 18 H 1.48503 * 109.47280 * 240.00316 * 15 13 11 19 19 C 1.46491 * 120.00055 * 186.62653 * 9 7 6 20 20 C 1.50707 * 109.47077 * 85.07697 * 19 9 7 21 21 C 1.34516 * 125.78396 * 89.71455 * 20 19 9 22 22 C 1.41382 * 106.83742 * 179.89287 * 21 20 19 23 23 C 1.34513 * 106.84258 * 0.37199 * 22 21 20 24 24 O 1.34299 * 125.79338 * 270.02726 * 20 19 9 25 25 C 1.40296 * 119.73174 * 359.97438 * 6 5 4 26 26 O 1.35658 * 120.11592 * 179.97438 * 25 6 5 27 27 C 1.42904 * 116.99695 * 180.02562 * 26 25 6 28 28 C 1.38442 * 119.75886 * 0.25769 * 25 6 5 29 29 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46799 * 299.99430 * 1 2 3 31 31 H 1.08999 * 109.47036 * 59.99587 * 1 2 3 32 32 H 1.08003 * 119.88069 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.02056 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46928 * 224.22981 * 10 9 7 35 35 H 1.09007 * 109.47222 * 344.22747 * 10 9 7 36 36 H 0.96996 * 119.99929 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47596 * 205.07835 * 19 9 7 38 38 H 1.09002 * 109.47259 * 325.08346 * 19 9 7 39 39 H 1.07995 * 126.58218 * 0.03016 * 21 20 19 40 40 H 1.08004 * 126.58078 * 180.16240 * 22 21 20 41 41 H 1.08000 * 125.79626 * 179.75119 * 23 22 21 42 42 H 1.08994 * 109.47390 * 180.02562 * 27 26 25 43 43 H 1.08997 * 109.47237 * 59.99369 * 27 26 25 44 44 H 1.09008 * 109.46814 * 299.99883 * 27 26 25 45 45 H 1.07997 * 119.97876 * 179.72788 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2843 2.3747 0.0005 5 6 1.9005 3.6043 0.0000 6 6 3.2968 3.6858 -0.0005 7 6 3.9607 5.0007 -0.0017 8 8 5.0124 5.1514 0.5902 9 7 3.4028 6.0368 -0.6588 10 6 2.0690 5.8975 -1.2484 11 6 1.0625 6.6199 -0.3904 12 1 1.3842 7.1313 0.5049 13 6 -0.2690 6.6279 -0.7482 14 7 -0.6608 6.0048 -1.8381 15 14 -1.5166 7.5228 0.3158 16 1 -0.8258 8.1382 1.4773 17 1 -2.1792 8.5838 -0.4845 18 1 -2.5367 6.5582 0.8000 19 6 4.1302 7.3023 -0.7834 20 6 5.0545 7.2356 -1.9718 21 6 4.7424 7.5885 -3.2318 22 6 5.8975 7.3686 -4.0168 23 6 6.8438 6.8866 -3.1912 24 8 6.3275 6.8082 -1.9538 25 6 4.0624 2.5101 0.0000 26 8 5.4171 2.5801 -0.0010 27 6 6.1306 1.3419 -0.0010 28 6 3.4302 1.2785 -0.0043 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.2060 2.3134 0.0005 33 1 1.3066 4.5064 0.0000 34 1 2.0678 6.3274 -2.2500 35 1 1.8057 4.8413 -1.3061 36 1 -1.5976 6.0102 -2.0896 37 1 3.4200 8.1176 -0.9208 38 1 4.7133 7.4768 0.1209 39 1 3.7925 7.9692 -3.5770 40 1 5.9995 7.5494 -5.0767 41 1 7.8483 6.6094 -3.4751 42 1 7.2024 1.5401 -0.0014 43 1 5.8661 0.7701 -0.8904 44 1 5.8674 0.7710 0.8896 45 1 4.0160 0.3712 -0.0084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071797539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:23 Heat of formation + Delta-G solvation = -54.469204 kcal Electronic energy + Delta-G solvation = -31104.954264 eV Core-core repulsion = 26862.931154 eV Total energy + Delta-G solvation = -4242.023109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.44894 -41.86472 -40.42094 -39.85935 -37.52323 -36.80718 -34.71769 -33.85857 -32.63641 -31.29897 -30.97415 -29.22738 -28.38925 -28.12937 -26.81692 -25.13138 -23.73558 -23.12224 -22.58536 -21.67381 -20.68149 -19.51041 -18.78955 -18.29699 -17.97271 -17.89809 -17.42853 -17.04907 -16.96274 -16.51954 -16.40850 -16.38209 -15.96360 -15.87765 -15.49589 -15.12151 -14.72284 -14.31069 -14.00630 -13.93364 -13.76950 -13.68238 -13.55180 -13.44308 -13.26886 -12.98388 -12.85553 -12.65645 -12.53671 -12.43412 -12.35823 -12.12944 -11.77448 -11.69960 -11.29954 -10.88261 -10.77659 -10.54168 -9.65959 -9.56918 -9.38939 -9.09898 -8.19962 -6.35644 0.00732 0.36628 0.74992 1.43197 1.48100 1.57886 1.67026 1.84041 2.10427 2.20606 2.38252 2.41112 2.49285 2.78937 3.09142 3.69758 3.80986 3.89167 4.05371 4.11615 4.16773 4.19711 4.19788 4.37574 4.38795 4.40893 4.46404 4.49516 4.58938 4.66373 4.69852 4.77243 4.87063 4.92962 4.99177 5.04662 5.20501 5.23853 5.26656 5.40581 5.54013 5.63131 5.68163 5.76232 6.02165 6.22297 6.26876 6.40097 6.56339 6.80217 7.28280 7.39710 8.85022 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.006766 B = 0.005859 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4137.167191 B = 4777.530956 C = 7995.978322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.318 6.318 3 C 0.192 3.808 4 C -0.257 4.257 5 C -0.018 4.018 6 C -0.237 4.237 7 C 0.562 3.438 8 O -0.576 6.576 9 N -0.592 5.592 10 C 0.225 3.775 11 C -0.549 4.549 12 H 0.058 0.942 13 C 0.034 3.966 14 N -0.907 5.907 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.198 3.802 20 C -0.044 4.044 21 C -0.206 4.206 22 C -0.222 4.222 23 C -0.045 4.045 24 O -0.191 6.191 25 C 0.208 3.792 26 O -0.317 6.317 27 C 0.013 3.987 28 C -0.262 4.262 29 H 0.131 0.869 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.147 0.853 33 H 0.172 0.828 34 H 0.011 0.989 35 H 0.064 0.936 36 H 0.270 0.730 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.175 0.825 41 H 0.239 0.761 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 -9.206 -1.327 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.231 6.231 3 C 0.145 3.855 4 C -0.276 4.276 5 C -0.036 4.036 6 C -0.241 4.241 7 C 0.353 3.647 8 O -0.457 6.457 9 N -0.322 5.322 10 C 0.106 3.894 11 C -0.587 4.587 12 H 0.076 0.924 13 C -0.168 4.168 14 N -0.545 5.545 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.200 1.200 19 C 0.075 3.925 20 C -0.095 4.095 21 C -0.226 4.226 22 C -0.241 4.241 23 C -0.113 4.113 24 O -0.087 6.087 25 C 0.159 3.841 26 O -0.229 6.229 27 C -0.081 4.081 28 C -0.281 4.281 29 H 0.149 0.851 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.188 0.812 34 H 0.029 0.971 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.099 0.901 39 H 0.167 0.833 40 H 0.192 0.808 41 H 0.255 0.745 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.729 -9.299 -0.876 11.511 hybrid contribution -1.157 0.694 0.027 1.349 sum 5.572 -8.605 -0.849 10.286 Atomic orbital electron populations 1.23441 0.75997 1.05991 1.02453 1.85974 1.23777 1.25851 1.87462 1.18943 0.91593 0.84527 0.90437 1.21269 1.01223 0.91302 1.13809 1.22248 0.92629 1.00707 0.88039 1.19235 0.93909 0.91665 1.19305 1.18282 0.83747 0.84527 0.78112 1.90663 1.24802 1.84648 1.45618 1.48092 1.18782 1.11515 1.53822 1.19991 0.77061 0.99384 0.92985 1.21585 0.92605 1.34602 1.09915 0.92402 1.25565 0.99686 0.95572 0.95992 1.70028 1.17565 1.42497 1.24408 0.85573 0.78969 0.78662 0.78925 1.19693 1.20495 1.19976 1.19664 0.91829 0.87609 0.93354 1.23086 0.83866 1.03973 0.98573 1.21874 1.01148 1.07054 0.92494 1.22135 0.92907 1.06942 1.02107 1.24876 1.01582 1.04026 0.80799 1.84094 1.25299 1.66013 1.33307 1.18669 0.82986 0.91981 0.90433 1.86261 1.14706 1.34929 1.86974 1.23462 0.97517 0.84305 1.02787 1.20342 0.92838 0.97028 1.17929 0.85079 0.91709 0.92110 0.83513 0.81157 0.97089 0.91863 0.92031 0.86135 0.90148 0.83330 0.80768 0.74504 0.86526 0.91044 0.90974 0.81729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.80 113.37 1.11 1.40 16 2 O -0.32 -8.39 10.48 -90.38 -0.95 -9.34 16 3 C 0.19 6.12 6.69 22.60 0.15 6.27 16 4 C -0.26 -9.10 9.01 22.33 0.20 -8.90 16 5 C -0.02 -0.78 7.39 22.50 0.17 -0.61 16 6 C -0.24 -10.48 5.52 -20.00 -0.11 -10.59 16 7 C 0.56 27.22 7.23 86.63 0.63 27.85 16 8 O -0.58 -29.95 15.52 13.27 0.21 -29.75 16 9 N -0.59 -27.48 2.49 -834.53 -2.08 -29.55 16 10 C 0.23 10.99 4.66 85.63 0.40 11.39 16 11 C -0.55 -27.58 7.54 25.60 0.19 -27.39 16 12 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 13 C 0.03 1.69 5.46 84.65 0.46 2.16 16 14 N -0.91 -46.90 13.29 21.45 0.28 -46.62 16 15 Si 0.95 39.76 29.54 68.60 2.03 41.78 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 C 0.20 8.27 5.88 85.64 0.50 8.78 16 20 C -0.04 -1.74 6.86 24.84 0.17 -1.57 16 21 C -0.21 -7.30 10.81 22.19 0.24 -7.06 16 22 C -0.22 -6.47 10.91 22.19 0.24 -6.23 16 23 C -0.05 -1.32 12.09 66.97 0.81 -0.51 16 24 O -0.19 -7.41 10.65 -2.45 -0.03 -7.43 16 25 C 0.21 8.01 6.66 22.82 0.15 8.16 16 26 O -0.32 -11.80 9.10 -72.38 -0.66 -12.46 16 27 C 0.01 0.31 9.81 113.37 1.11 1.42 16 28 C -0.26 -8.36 8.96 22.42 0.20 -8.16 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 31 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 32 H 0.15 4.62 6.27 -2.91 -0.02 4.60 16 33 H 0.17 8.03 3.90 -2.91 -0.01 8.02 16 34 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 3.19 3.80 -2.70 -0.01 3.18 16 36 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 37 H 0.12 4.70 7.92 -2.39 -0.02 4.68 16 38 H 0.08 3.38 7.49 -2.39 -0.02 3.37 16 39 H 0.15 5.12 8.06 -2.91 -0.02 5.10 16 40 H 0.17 3.83 8.06 -2.91 -0.02 3.80 16 41 H 0.24 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 1.40 7.65 -2.39 -0.02 1.38 16 44 H 0.07 1.42 7.67 -2.38 -0.02 1.40 16 45 H 0.17 4.12 6.29 -2.91 -0.02 4.10 16 Total: -1.00 -69.31 378.66 6.47 -62.84 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 1.03 Total: 34.13 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 6.63 Total: -3.60 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -1.79 Total: -76.17 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -1.43 Total: -58.98 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Total: -69.31 6.47 -62.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071797539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.372 kcal (2) G-P(sol) polarization free energy of solvation -69.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds