Wall clock time and date at job start Tue Mar 31 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86796 * 119.99965 * 2 1 4 4 H 1.48498 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47204 * 300.00019 * 3 2 1 6 6 H 1.48499 * 109.47155 * 60.00093 * 3 2 1 7 7 C 1.39891 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99774 * 197.84171 * 7 2 1 9 9 C 1.41218 * 119.99775 * 17.84064 * 7 2 1 10 10 C 1.40831 * 120.17623 * 204.46830 * 9 7 2 11 11 C 1.36437 * 119.81207 * 179.73011 * 10 9 7 12 12 C 1.39311 * 120.18145 * 0.22934 * 11 10 9 13 13 O 1.35679 * 119.81406 * 180.02562 * 12 11 10 14 14 C 1.42905 * 116.99606 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46963 * 179.97438 * 14 13 12 16 16 O 1.21287 * 120.00251 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00360 * 179.97438 * 15 14 13 18 18 C 1.47178 * 121.12823 * 0.02562 * 17 15 14 19 19 C 1.53014 * 108.00372 * 127.46035 * 18 17 15 20 20 N 1.47287 * 109.93952 * 54.89599 * 19 18 17 21 21 C 1.47186 * 108.97706 * 174.20282 * 20 19 18 22 22 C 1.52109 * 110.60703 * 183.63229 * 21 20 19 23 23 C 1.53240 * 108.84481 * 300.36608 * 22 21 20 24 24 C 1.52914 * 108.61537 * 58.70849 * 23 22 21 25 25 C 1.46756 * 111.54379 * 297.81556 * 20 19 18 26 26 H 1.08996 * 109.56296 * 299.95350 * 25 20 19 27 27 C 1.46841 * 121.13584 * 179.72417 * 17 15 14 28 28 C 1.39314 * 120.36911 * 0.02562 * 12 11 10 29 29 C 1.36435 * 120.18172 * 359.97438 * 28 12 11 30 30 H 0.97002 * 120.00054 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.09612 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.91139 * 180.25055 * 11 10 9 33 33 H 1.09005 * 109.47144 * 299.99801 * 14 13 12 34 34 H 1.09001 * 109.47621 * 60.00377 * 14 13 12 35 35 H 1.09006 * 109.75313 * 247.09123 * 18 17 15 36 36 H 1.09001 * 109.75862 * 7.77943 * 18 17 15 37 37 H 1.09000 * 109.39181 * 175.03415 * 19 18 17 38 38 H 1.08993 * 109.39126 * 294.75412 * 19 18 17 39 39 H 1.09001 * 109.34583 * 304.22255 * 21 20 19 40 40 H 1.09003 * 109.34492 * 63.75859 * 21 20 19 41 41 H 1.08993 * 109.69319 * 180.46888 * 22 21 20 42 42 H 1.09007 * 109.52424 * 60.15777 * 22 21 20 43 43 H 1.08999 * 109.61010 * 298.97506 * 23 22 21 44 44 H 1.08993 * 109.75922 * 178.53791 * 23 22 21 45 45 H 1.09003 * 109.39072 * 181.70277 * 24 23 22 46 46 H 1.09001 * 109.38795 * 62.00022 * 24 23 22 47 47 H 1.08996 * 109.50294 * 351.43859 * 27 17 15 48 48 H 1.08994 * 109.50872 * 111.57189 * 27 17 15 49 49 H 1.07994 * 119.90778 * 180.02562 * 28 12 11 50 50 H 1.08002 * 120.09375 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0493 -1.2339 0.2871 9 6 1.3531 -2.4052 -0.3736 10 6 1.8274 -3.6480 0.0889 11 6 1.1853 -4.7963 -0.2728 12 6 0.0664 -4.7420 -1.1010 13 8 -0.5666 -5.8885 -1.4555 14 6 -1.7072 -5.7629 -2.3073 15 6 -2.2740 -7.1298 -2.5924 16 8 -1.7524 -8.1146 -2.1138 17 7 -3.3607 -7.2581 -3.3793 18 6 -4.0132 -6.0802 -3.9734 19 6 -4.1371 -6.3178 -5.4799 20 7 -4.8408 -7.5869 -5.7320 21 6 -5.0717 -7.7269 -7.1789 22 6 -5.8762 -8.9838 -7.4735 23 6 -5.0996 -10.2005 -6.9588 24 6 -4.8657 -10.0308 -5.4572 25 6 -4.0984 -8.7314 -5.1911 26 1 -3.1164 -8.7845 -5.6611 27 6 -3.9300 -8.5782 -3.6784 28 6 -0.4061 -3.5171 -1.5671 29 6 0.2245 -2.3597 -1.2149 30 1 -0.4850 0.8401 -0.0004 31 1 2.6940 -3.6917 0.7318 32 1 1.5453 -5.7498 0.0842 33 1 -2.4631 -5.1513 -1.8146 34 1 -1.4112 -5.2903 -3.2438 35 1 -5.0039 -5.9492 -3.5383 36 1 -3.4093 -5.1918 -3.7883 37 1 -4.6966 -5.4981 -5.9308 38 1 -3.1421 -6.3616 -5.9225 39 1 -5.6144 -6.8550 -7.5440 40 1 -4.1128 -7.7937 -7.6928 41 1 -6.0312 -9.0772 -8.5483 42 1 -6.8406 -8.9257 -6.9688 43 1 -4.1408 -10.2669 -7.4731 44 1 -5.6751 -11.1083 -7.1392 45 1 -4.2874 -10.8757 -5.0832 46 1 -5.8262 -9.9958 -4.9431 47 1 -3.2618 -9.3552 -3.3074 48 1 -4.9027 -8.6728 -3.1958 49 1 -1.2743 -3.4837 -2.2085 50 1 -0.1433 -1.4108 -1.5767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071839690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:58 Heat of formation + Delta-G solvation = -46.815752 kcal Electronic energy + Delta-G solvation = -29755.721881 eV Core-core repulsion = 25747.582407 eV Total energy + Delta-G solvation = -4008.139474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.69708 -39.30562 -38.35819 -36.36032 -35.96496 -33.71134 -33.37527 -32.29478 -29.79949 -29.63387 -29.47614 -28.22563 -25.74566 -24.69715 -24.14917 -23.24217 -21.84302 -21.13891 -20.54501 -20.12974 -18.96128 -17.67445 -17.32046 -16.70053 -16.17379 -16.06812 -15.97844 -15.38591 -15.21580 -14.94039 -14.75301 -14.44616 -14.32093 -13.97861 -13.83578 -13.63948 -13.35981 -12.95949 -12.83851 -12.49986 -12.34440 -12.26431 -11.96938 -11.86366 -11.79039 -11.61597 -11.53464 -11.44097 -11.15600 -11.10519 -11.01661 -10.89405 -10.74208 -10.64084 -10.01359 -9.81575 -9.69192 -9.37035 -9.04911 -9.00111 -8.62372 -7.68645 -7.04887 -6.75977 -4.27810 2.58279 2.59901 2.73039 2.94322 3.07089 3.12422 3.18287 3.41767 3.93225 4.01871 4.34392 4.34707 4.43316 4.56362 4.58538 4.69087 4.81798 4.83023 4.91659 4.95890 5.01152 5.13863 5.27259 5.29093 5.31395 5.35727 5.36767 5.46926 5.49740 5.55698 5.56703 5.64829 5.67497 5.72627 5.77948 5.97423 6.04016 6.22556 6.27065 6.57652 6.65929 6.68907 6.86304 7.04078 7.19238 7.25022 7.37715 7.53268 7.85631 7.97362 8.10358 8.15845 8.40184 8.61394 8.87639 8.95876 10.19012 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.001998 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.833721 B =14009.310438 C =14976.373897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.195 4.195 11 C -0.107 4.107 12 C -0.013 4.013 13 O -0.305 6.305 14 C 0.054 3.946 15 C 0.521 3.479 16 O -0.518 6.518 17 N -0.618 5.618 18 C 0.109 3.891 19 C 0.036 3.964 20 N -0.525 5.525 21 C 0.052 3.948 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.112 4.112 25 C 0.072 3.928 26 H 0.046 0.954 27 C 0.122 3.878 28 C -0.174 4.174 29 C -0.134 4.134 30 H 0.279 0.721 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.993 -12.252 -14.928 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.085 3.915 10 C -0.214 4.214 11 C -0.126 4.126 12 C -0.057 4.057 13 O -0.220 6.220 14 C -0.025 4.025 15 C 0.309 3.691 16 O -0.392 6.392 17 N -0.355 5.355 18 C -0.015 4.015 19 C -0.093 4.093 20 N -0.250 5.250 21 C -0.075 4.075 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.037 4.037 26 H 0.064 0.936 27 C -0.001 4.001 28 C -0.193 4.193 29 C -0.154 4.154 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.114 0.886 48 H 0.092 0.908 49 H 0.111 0.889 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.269 -12.796 -14.306 23.917 hybrid contribution 0.845 1.136 -0.583 1.531 sum -13.424 -11.660 -14.889 23.191 Atomic orbital electron populations 1.69848 1.07520 1.28978 1.36212 1.25887 0.94726 1.01263 0.92358 0.86284 0.81033 0.81055 0.78482 1.18428 1.19792 1.20070 1.19510 0.98134 0.91159 1.40301 0.90402 1.17620 0.91834 0.92200 0.89819 1.20608 1.03133 0.92149 1.05549 1.19626 0.95229 0.97854 0.99912 1.18605 0.97780 0.83504 1.05762 1.85917 1.40665 1.30691 1.64696 1.22106 0.90475 0.93781 0.96139 1.20440 0.79321 0.91321 0.77997 1.90705 1.58834 1.39912 1.49715 1.48026 1.29474 1.07845 1.50144 1.21900 0.99100 0.88088 0.92369 1.22548 0.97734 0.92691 0.96316 1.62428 1.46986 1.01591 1.14040 1.21990 0.99038 0.98959 0.87544 1.21461 0.99510 0.93882 1.00696 1.21571 1.00387 0.98240 0.95727 1.21592 1.01077 0.95659 0.96703 1.21949 0.95526 0.91145 0.95077 0.93612 1.21605 0.99393 0.85293 0.93797 1.20565 1.01360 0.92879 1.04479 1.20926 0.98523 0.96419 0.99511 0.91037 0.88072 0.88296 0.90005 0.90276 0.89951 0.88914 0.89086 0.94067 0.90481 0.94978 0.91416 0.90929 0.92201 0.91454 0.91085 0.90725 0.88621 0.90781 0.88882 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.35 10.96 55.55 0.61 -19.74 16 2 C 0.07 1.84 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.47 29.60 -169.99 -5.03 13.44 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.13 9.04 -37.83 -0.34 -12.47 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.09 2.32 5.57 -106.80 -0.60 1.73 16 10 C -0.19 -4.83 9.74 -39.25 -0.38 -5.21 16 11 C -0.11 -2.56 9.92 -39.83 -0.40 -2.96 16 12 C -0.01 -0.31 6.71 -38.78 -0.26 -0.57 16 13 O -0.30 -6.66 9.65 -38.65 -0.37 -7.03 16 14 C 0.05 0.90 3.58 36.01 0.13 1.03 16 15 C 0.52 8.42 7.79 -10.99 -0.09 8.33 16 16 O -0.52 -10.41 15.97 -14.36 -0.23 -10.64 16 17 N -0.62 -7.50 3.01 -172.87 -0.52 -8.02 16 18 C 0.11 0.99 6.53 -3.66 -0.02 0.96 16 19 C 0.04 0.29 5.47 -3.61 -0.02 0.27 16 20 N -0.52 -4.36 4.73 -226.62 -1.07 -5.43 16 21 C 0.05 0.36 5.26 -4.12 -0.02 0.34 16 22 C -0.12 -0.70 6.08 -27.06 -0.16 -0.86 16 23 C -0.12 -0.75 6.03 -26.65 -0.16 -0.91 16 24 C -0.11 -0.80 5.23 -26.65 -0.14 -0.94 16 25 C 0.07 0.65 2.38 -67.68 -0.16 0.49 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 C 0.12 1.30 5.76 -3.87 -0.02 1.28 16 28 C -0.17 -3.98 8.96 -39.83 -0.36 -4.34 16 29 C -0.13 -3.42 8.64 -39.25 -0.34 -3.76 16 30 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 31 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.08 1.23 7.49 -51.93 -0.39 0.84 16 34 H 0.08 1.16 7.21 -51.93 -0.37 0.79 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.78 6.05 -51.93 -0.31 0.47 16 37 H 0.09 0.58 7.99 -51.93 -0.42 0.16 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.47 8.00 -51.93 -0.42 0.05 16 40 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 47 H 0.10 1.16 7.06 -51.93 -0.37 0.79 16 48 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 49 H 0.09 1.81 6.27 -52.49 -0.33 1.48 16 50 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -31.19 391.14 -12.12 -43.31 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.97 Total: 4.06 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.43 Total: -15.83 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: -0.98 Total: -33.19 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.60 Total: -17.67 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.19 -12.12 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071839690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.508 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds