Wall clock time and date at job start Tue Mar 31 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86807 * 119.99994 * 2 1 4 4 H 1.48505 * 109.46718 * 239.99406 * 3 2 1 5 5 H 1.48501 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47361 * 119.99467 * 3 2 1 7 7 C 1.39884 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00300 * 197.97019 * 7 2 1 9 9 C 1.41214 * 119.99871 * 17.97753 * 7 2 1 10 10 C 1.40838 * 120.18090 * 204.31906 * 9 7 2 11 11 C 1.36437 * 119.81413 * 180.25463 * 10 9 7 12 12 C 1.39308 * 120.18256 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.81457 * 180.02562 * 12 11 10 14 14 C 1.42894 * 117.00266 * 359.97438 * 13 12 11 15 15 C 1.50697 * 109.47437 * 180.02562 * 14 13 12 16 16 O 1.21285 * 120.00113 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00305 * 180.02562 * 15 14 13 18 18 C 1.47168 * 121.12774 * 359.70883 * 17 15 14 19 19 C 1.52581 * 108.23241 * 232.51988 * 18 17 15 20 20 N 1.47284 * 110.00960 * 305.32871 * 19 18 17 21 21 C 1.47187 * 108.97867 * 185.69777 * 20 19 18 22 22 C 1.52808 * 110.21659 * 175.99400 * 21 20 19 23 23 C 1.53236 * 108.75209 * 59.92855 * 22 21 20 24 24 C 1.52910 * 108.62161 * 301.11031 * 23 22 21 25 25 C 1.46758 * 111.54502 * 62.07061 * 20 19 18 26 26 H 1.08997 * 109.56259 * 60.04722 * 25 20 19 27 27 C 1.46832 * 121.12929 * 180.02562 * 17 15 14 28 28 C 1.39319 * 120.36751 * 359.97438 * 12 11 10 29 29 C 1.36432 * 120.18324 * 359.97438 * 28 12 11 30 30 H 0.97001 * 120.00281 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.09246 * 0.25151 * 10 9 7 32 32 H 1.08000 * 119.90551 * 180.02562 * 11 10 9 33 33 H 1.08997 * 109.47288 * 300.00207 * 14 13 12 34 34 H 1.09007 * 109.46979 * 60.00712 * 14 13 12 35 35 H 1.09003 * 109.75689 * 352.19540 * 18 17 15 36 36 H 1.09004 * 109.75351 * 112.93563 * 18 17 15 37 37 H 1.08997 * 109.46333 * 185.09893 * 19 18 17 38 38 H 1.08998 * 109.25206 * 65.42771 * 19 18 17 39 39 H 1.08997 * 109.34526 * 296.21999 * 21 20 19 40 40 H 1.09002 * 109.34344 * 55.77158 * 21 20 19 41 41 H 1.08998 * 109.59185 * 179.70583 * 22 21 20 42 42 H 1.09001 * 109.59448 * 300.00424 * 22 21 20 43 43 H 1.08999 * 109.61430 * 60.84878 * 23 22 21 44 44 H 1.09008 * 109.61365 * 181.37704 * 23 22 21 45 45 H 1.08997 * 109.39404 * 298.00385 * 24 23 22 46 46 H 1.08995 * 109.39550 * 178.29589 * 24 23 22 47 47 H 1.09000 * 109.50641 * 248.40326 * 27 17 15 48 48 H 1.09002 * 109.50958 * 8.53497 * 27 17 15 49 49 H 1.08001 * 119.90347 * 180.02562 * 28 12 11 50 50 H 1.07996 * 120.09467 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6966 1.2126 7 6 2.0082 -1.2114 0.0005 8 1 3.0487 -1.2341 0.2891 9 6 1.3538 -2.4047 -0.3764 10 6 1.8291 -3.6483 0.0830 11 6 1.1942 -4.7969 -0.2900 12 6 0.0792 -4.7419 -1.1234 13 8 -0.5467 -5.8887 -1.4892 14 6 -0.0078 -7.1118 -0.9836 15 6 -0.8266 -8.2700 -1.4926 16 8 -1.7778 -8.0680 -2.2174 17 7 -0.5019 -9.5303 -1.1423 18 6 0.6508 -9.8044 -0.2694 19 6 1.5359 -10.8389 -0.9582 20 7 0.7432 -12.0318 -1.3015 21 6 1.6426 -13.0660 -1.8382 22 6 0.8645 -14.3524 -2.1115 23 6 -0.2387 -14.0534 -3.1321 24 6 -1.1510 -12.9672 -2.5610 25 6 -0.3333 -11.7101 -2.2457 26 1 0.0947 -11.3069 -3.1635 27 6 -1.2822 -10.6770 -1.6243 28 6 -0.3973 -3.5158 -1.5822 29 6 0.2254 -2.3580 -1.2177 30 1 -0.4850 0.8400 -0.0004 31 1 2.6937 -3.6927 0.7288 32 1 1.5571 -5.7514 0.0617 33 1 1.0234 -7.2208 -1.3197 34 1 -0.0353 -7.0980 0.1060 35 1 1.2166 -8.8869 -0.1073 36 1 0.3040 -10.1978 0.6862 37 1 2.3484 -11.1243 -0.2900 38 1 1.9524 -10.4069 -1.8681 39 1 2.0890 -12.7099 -2.7666 40 1 2.4323 -13.2685 -1.1146 41 1 1.5385 -15.1090 -2.5131 42 1 0.4194 -14.7143 -1.1846 43 1 0.2086 -13.7035 -4.0625 44 1 -0.8188 -14.9572 -3.3192 45 1 -1.6202 -13.3322 -1.6474 46 1 -1.9234 -12.7230 -3.2902 47 1 -1.8168 -11.1301 -0.7894 48 1 -1.9968 -10.3411 -2.3757 49 1 -1.2626 -3.4819 -2.2277 50 1 -0.1450 -1.4083 -1.5746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071839691.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:04 Heat of formation + Delta-G solvation = -46.540972 kcal Electronic energy + Delta-G solvation = -29649.940272 eV Core-core repulsion = 25641.812714 eV Total energy + Delta-G solvation = -4008.127558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.70399 -39.30687 -38.35942 -36.36341 -35.97603 -33.73045 -33.34745 -32.27426 -30.04147 -29.65311 -29.14844 -28.33396 -25.74305 -24.70110 -24.15965 -23.26346 -21.87917 -20.97601 -20.64239 -20.14889 -19.01231 -17.71331 -17.26748 -16.73253 -16.18832 -16.08029 -15.93908 -15.42463 -15.14658 -14.95972 -14.76397 -14.48123 -14.36470 -13.97423 -13.84480 -13.64303 -13.35137 -12.97241 -12.91362 -12.47109 -12.27846 -12.20062 -12.10443 -11.87770 -11.80468 -11.70157 -11.51043 -11.39859 -11.12218 -11.11577 -10.93590 -10.89965 -10.74674 -10.67827 -10.04589 -9.86974 -9.69655 -9.33154 -9.04179 -9.01381 -8.64048 -7.66461 -7.06521 -6.73693 -4.27425 2.57091 2.58709 2.77514 2.93289 3.07632 3.09672 3.21089 3.40514 3.93895 4.00881 4.32043 4.33784 4.42916 4.55803 4.60042 4.67970 4.79329 4.81877 4.89355 4.93392 4.99214 5.12283 5.24762 5.27582 5.29479 5.33547 5.33633 5.45340 5.48746 5.54476 5.54893 5.65432 5.66369 5.71378 5.76799 5.96543 5.99723 6.18090 6.23843 6.56225 6.67116 6.69900 6.95200 7.07692 7.15773 7.19124 7.43543 7.53566 7.75298 7.98701 8.11674 8.19342 8.41196 8.62420 8.88124 8.96263 10.20687 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.001835 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.659306 B =15257.047557 C =15862.628624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.199 4.199 11 C -0.167 4.167 12 C -0.013 4.013 13 O -0.304 6.304 14 C 0.054 3.946 15 C 0.521 3.479 16 O -0.516 6.516 17 N -0.619 5.619 18 C 0.109 3.891 19 C 0.035 3.965 20 N -0.525 5.525 21 C 0.052 3.948 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.112 4.112 25 C 0.072 3.928 26 H 0.047 0.953 27 C 0.122 3.878 28 C -0.114 4.114 29 C -0.134 4.134 30 H 0.281 0.719 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -25.308 -1.778 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.219 4.219 11 C -0.186 4.186 12 C -0.056 4.056 13 O -0.219 6.219 14 C -0.025 4.025 15 C 0.309 3.691 16 O -0.390 6.390 17 N -0.355 5.355 18 C -0.014 4.014 19 C -0.093 4.093 20 N -0.251 5.251 21 C -0.076 4.076 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.037 4.037 26 H 0.065 0.935 27 C -0.001 4.001 28 C -0.133 4.133 29 C -0.153 4.153 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.114 0.886 49 H 0.117 0.883 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.269 -25.169 -1.852 25.269 hybrid contribution 1.086 0.961 -0.400 1.504 sum 2.355 -24.208 -2.252 24.426 Atomic orbital electron populations 1.69822 1.07515 1.29334 1.35589 1.25889 0.94727 1.01262 0.92367 0.86375 0.80127 0.80342 0.79900 1.18879 1.20369 1.19088 1.19432 0.98082 0.91220 1.40530 0.90533 1.17607 0.91790 0.92144 0.89781 1.20540 1.03246 0.92418 1.05648 1.20365 0.97915 0.97763 1.02559 1.18628 0.97218 0.84432 1.05317 1.85938 1.54212 1.11257 1.70462 1.22100 0.96687 0.84510 0.99225 1.20442 0.85003 0.83262 0.80432 1.90711 1.28471 1.84102 1.35735 1.48028 1.31305 1.05489 1.50708 1.21799 0.86801 0.99016 0.93806 1.22473 0.95931 0.90735 1.00185 1.62438 1.11411 1.08821 1.42410 1.22135 0.94830 0.92148 0.98460 1.21583 0.97658 0.96452 0.99812 1.21573 0.97268 0.98752 0.98337 1.21596 0.97726 0.94046 1.01675 1.22042 0.92544 0.95419 0.93687 0.93516 1.21716 0.93561 0.84768 1.00068 1.19847 1.00780 0.90032 1.02663 1.20990 0.98559 0.96280 0.99459 0.90788 0.88643 0.88927 0.90328 0.90102 0.88983 0.90009 0.89087 0.94108 0.94886 0.90515 0.91466 0.90898 0.92174 0.91462 0.90722 0.91078 0.90748 0.88602 0.88268 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.64 10.96 55.54 0.61 -20.03 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.18 9.04 -37.84 -0.34 -12.52 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 10 C -0.20 -4.79 9.74 -39.25 -0.38 -5.17 16 11 C -0.17 -3.68 8.96 -39.83 -0.36 -4.04 16 12 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 13 O -0.30 -6.65 9.65 -38.63 -0.37 -7.02 16 14 C 0.05 0.88 3.58 36.00 0.13 1.01 16 15 C 0.52 8.32 7.79 -10.98 -0.09 8.23 16 16 O -0.52 -10.39 15.97 -14.36 -0.23 -10.61 16 17 N -0.62 -7.35 3.01 -172.87 -0.52 -7.87 16 18 C 0.11 0.94 6.50 -3.89 -0.03 0.92 16 19 C 0.04 0.27 5.45 -3.83 -0.02 0.25 16 20 N -0.53 -4.22 4.72 -226.17 -1.07 -5.29 16 21 C 0.05 0.35 5.30 -3.77 -0.02 0.33 16 22 C -0.12 -0.67 6.11 -26.71 -0.16 -0.84 16 23 C -0.12 -0.73 6.02 -26.66 -0.16 -0.89 16 24 C -0.11 -0.78 5.21 -26.65 -0.14 -0.92 16 25 C 0.07 0.64 2.41 -67.44 -0.16 0.47 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 C 0.12 1.28 5.77 -3.64 -0.02 1.26 16 28 C -0.11 -2.84 9.92 -39.83 -0.40 -3.23 16 29 C -0.13 -3.51 8.65 -39.25 -0.34 -3.85 16 30 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 31 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.09 1.68 6.27 -52.49 -0.33 1.35 16 33 H 0.08 1.12 7.19 -51.93 -0.37 0.75 16 34 H 0.08 1.17 7.50 -51.93 -0.39 0.78 16 35 H 0.09 0.72 6.06 -51.93 -0.31 0.41 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.54 7.99 -51.93 -0.42 0.12 16 38 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.44 8.00 -51.93 -0.42 0.03 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 45 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 48 H 0.10 1.15 7.06 -51.93 -0.37 0.78 16 49 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 50 H 0.13 3.39 6.15 -52.49 -0.32 3.07 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -31.38 391.15 -12.11 -43.50 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.97 Total: 3.86 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -3.43 Total: -16.01 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: -0.98 Total: -33.19 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.60 Total: -17.63 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.38 -12.11 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071839691.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.043 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds