Wall clock time and date at job start Tue Mar 31 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53502 * 2 1 4 4 C 1.51583 * 110.59736 * 237.00627 * 2 1 3 5 5 O 1.21240 * 127.15759 * 61.50829 * 4 2 1 6 6 N 1.34765 * 105.68465 * 241.46798 * 4 2 1 7 7 C 1.46496 * 124.17806 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.46953 * 90.00275 * 7 6 4 9 9 H 1.09004 * 109.46967 * 55.00716 * 8 7 6 10 10 C 1.47196 * 109.47258 * 295.00230 * 8 7 6 11 11 N 4.63140 * 135.48558 * 266.62748 * 2 1 3 12 12 C 1.53006 * 109.47267 * 174.99906 * 8 7 6 13 13 C 1.50700 * 109.47066 * 185.00320 * 12 8 7 14 14 H 1.07997 * 119.99986 * 0.02562 * 13 12 8 15 15 C 1.37873 * 119.99512 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00413 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99708 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46822 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46644 * 120.00057 * 17 15 13 20 20 H 1.48494 * 109.47061 * 240.00001 * 17 15 13 21 21 C 1.33795 * 111.64645 * 359.76991 * 6 4 2 22 22 O 1.21540 * 123.77405 * 180.24387 * 21 6 4 23 23 N 1.34527 * 112.45445 * 0.40495 * 21 6 4 24 24 C 1.40050 * 126.68951 * 179.87142 * 23 21 6 25 25 C 1.38848 * 120.04286 * 179.97438 * 24 23 21 26 26 C 1.38115 * 119.95347 * 180.25784 * 25 24 23 27 27 C 1.38481 * 120.04275 * 359.48686 * 26 25 24 28 28 F 1.35098 * 119.95368 * 180.23537 * 27 26 25 29 29 C 1.38471 * 120.08898 * 0.25792 * 27 26 25 30 30 C 1.38117 * 120.04446 * 0.02562 * 29 27 26 31 31 H 1.09006 * 109.46930 * 297.16729 * 1 2 3 32 32 H 1.08994 * 109.47457 * 57.16575 * 1 2 3 33 33 H 1.09001 * 109.47022 * 177.17009 * 1 2 3 34 34 H 1.09003 * 109.47776 * 210.00524 * 7 6 4 35 35 H 1.09002 * 109.47229 * 330.01086 * 7 6 4 36 36 H 1.09004 * 109.47094 * 305.00395 * 12 8 7 37 37 H 1.08998 * 109.46623 * 64.99995 * 12 8 7 38 38 H 0.97009 * 119.99804 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.02652 * 359.97438 * 25 24 23 40 40 H 1.08002 * 119.98157 * 179.77188 * 26 25 24 41 41 H 1.07996 * 119.97799 * 180.02562 * 29 27 26 42 42 H 1.07998 * 120.02040 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0633 -0.7727 -1.1901 5 8 1.8894 -0.5220 -2.3635 6 7 2.7716 -1.7957 -0.6726 7 6 3.4685 -2.8035 -1.4755 8 6 4.8974 -2.3334 -1.7557 9 1 5.3967 -2.1071 -0.8135 10 6 4.8606 -1.1244 -2.5944 11 7 4.8325 -0.1910 -3.2414 12 6 5.6637 -3.4380 -2.4863 13 6 7.1032 -3.0247 -2.6532 14 1 7.4382 -2.0699 -2.2756 15 6 7.9926 -3.8655 -3.2881 16 7 7.5848 -5.0283 -3.7475 17 14 9.7769 -3.3528 -3.4956 18 1 9.9790 -2.0096 -2.8955 19 1 10.6568 -4.3363 -2.8145 20 1 10.1133 -3.3054 -4.9412 21 6 2.7642 -1.7742 0.6652 22 8 3.3375 -2.5925 1.3573 23 7 2.0484 -0.7476 1.1586 24 6 1.8413 -0.4452 2.5103 25 6 1.0739 0.6557 2.8667 26 6 0.8753 0.9554 4.2002 27 6 1.4322 0.1526 5.1816 28 9 1.2329 0.4446 6.4855 29 6 2.1935 -0.9488 4.8282 30 6 2.3993 -1.2485 3.4958 31 1 -0.3633 0.4693 0.9143 32 1 -0.3634 0.5572 -0.8634 33 1 -0.3633 -1.0264 -0.0507 34 1 3.4967 -3.7469 -0.9302 35 1 2.9411 -2.9448 -2.4189 36 1 5.6151 -4.3591 -1.9055 37 1 5.2168 -3.6026 -3.4667 38 1 8.2105 -5.6197 -4.1945 39 1 0.6363 1.2799 2.1016 40 1 0.2815 1.8137 4.4779 41 1 2.6267 -1.5739 5.5951 42 1 2.9935 -2.1073 3.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071855312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:26 Heat of formation + Delta-G solvation = -27.408370 kcal Electronic energy + Delta-G solvation = -29638.361666 eV Core-core repulsion = 25306.344449 eV Total energy + Delta-G solvation = -4332.017217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.11756 -42.95029 -39.69029 -38.65029 -37.18420 -36.57606 -35.24564 -33.74483 -32.20337 -31.95496 -31.25504 -29.59330 -27.44805 -25.33437 -24.46941 -23.64992 -23.16590 -21.96674 -21.76104 -20.47968 -18.44937 -17.95511 -17.56468 -17.35218 -16.68678 -16.58039 -16.14462 -15.92284 -15.82893 -15.45260 -15.13932 -14.70060 -14.56996 -14.49724 -14.04911 -13.95738 -13.65081 -13.52729 -13.34208 -13.15356 -12.93206 -12.63312 -12.56404 -12.35549 -12.18973 -11.85096 -11.66310 -11.60723 -11.16431 -10.95249 -10.85116 -10.66277 -10.60234 -10.44274 -10.26693 -10.05450 -9.59057 -9.52288 -9.26398 -8.50722 -8.28655 -6.14742 -4.18233 0.68303 0.83454 1.45612 1.65067 2.51750 2.70187 3.26171 3.29643 3.34430 3.38908 3.51527 3.54555 3.59034 3.96327 4.08918 4.31895 4.36906 4.41890 4.45192 4.58261 4.64345 4.85251 4.94047 5.05912 5.11848 5.20788 5.23058 5.24451 5.30246 5.40298 5.50154 5.59112 5.70763 5.74117 5.92405 6.03139 6.09651 6.17598 6.32510 6.56921 6.84533 7.14745 7.32407 7.40862 7.75054 7.79820 8.14876 8.32782 8.85324 9.47610 10.96118 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.002753 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.163891 B =10168.817867 C =11306.007785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 H 0.132 0.868 4 C 0.522 3.478 5 O -0.442 6.442 6 N -0.573 5.573 7 C 0.123 3.877 8 C -0.008 4.008 9 H 0.108 0.892 10 C 0.228 3.772 11 N -0.452 5.452 12 C 0.035 3.965 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.283 1.283 21 C 0.704 3.296 22 O -0.513 6.513 23 N -0.564 5.564 24 C 0.187 3.813 25 C -0.134 4.134 26 C -0.122 4.122 27 C 0.069 3.931 28 F -0.142 7.142 29 C -0.118 4.118 30 C -0.123 4.123 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.105 8.792 16.008 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.021 4.021 3 H 0.150 0.850 4 C 0.308 3.692 5 O -0.309 6.309 6 N -0.318 5.318 7 C 0.003 3.997 8 C -0.030 4.030 9 H 0.126 0.874 10 C -0.089 4.089 11 N -0.129 5.129 12 C -0.004 4.004 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.209 1.209 21 C 0.407 3.593 22 O -0.385 6.385 23 N -0.292 5.292 24 C 0.093 3.907 25 C -0.155 4.155 26 C -0.141 4.141 27 C 0.049 3.951 28 F -0.120 7.120 29 C -0.138 4.138 30 C -0.143 4.143 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.839 9.675 14.659 25.034 hybrid contribution 1.156 -0.031 0.207 1.175 sum -16.683 9.644 14.867 24.338 Atomic orbital electron populations 1.22089 0.90025 1.04519 1.04724 1.22324 0.98318 0.98561 0.82913 0.85012 1.20677 0.77849 0.80781 0.89901 1.90888 1.55931 1.68090 1.16012 1.46622 1.48915 1.29051 1.07203 1.22108 0.91624 0.90131 0.95864 1.19635 0.95281 0.90146 0.97957 0.87426 1.29015 0.92377 0.93832 0.93670 1.81025 1.09191 1.12693 1.09946 1.19170 0.94385 0.91101 0.95707 1.21096 0.93547 1.03636 1.38220 0.92471 1.24936 0.98989 0.94827 0.95109 1.69939 1.35274 1.09240 1.38342 0.86515 0.84752 0.78766 0.77945 1.19698 1.20741 1.20916 1.15793 0.79684 0.81799 0.82050 1.90926 1.46818 1.40703 1.60094 1.45031 1.51434 1.28350 1.04401 1.17407 0.97788 0.95650 0.79841 1.20659 1.01193 0.97340 0.96319 1.20889 1.01359 1.00369 0.91529 1.17699 1.01791 0.97403 0.78202 1.91497 1.93731 1.93166 1.33629 1.21083 0.98980 0.96744 0.96956 1.21445 1.00945 1.01399 0.90542 0.89796 0.89159 0.90998 0.86262 0.87776 0.93772 0.95168 0.92731 0.84263 0.84168 0.84011 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.28 37.16 0.34 -0.59 16 2 C 0.09 0.75 3.35 -68.20 -0.23 0.52 16 3 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.52 6.66 6.93 -10.56 -0.07 6.59 16 5 O -0.44 -6.96 17.08 5.59 0.10 -6.87 16 6 N -0.57 -7.62 2.49 -120.73 -0.30 -7.92 16 7 C 0.12 1.78 5.13 -4.04 -0.02 1.76 16 8 C -0.01 -0.14 2.42 -93.40 -0.23 -0.37 16 9 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 10 C 0.23 4.70 12.37 -20.76 -0.26 4.45 16 11 N -0.45 -10.08 18.54 42.15 0.78 -9.30 16 12 C 0.03 0.79 4.42 -27.88 -0.12 0.67 16 13 C -0.53 -13.90 8.60 -34.44 -0.30 -14.19 16 14 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 17 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.70 9.14 8.23 -88.02 -0.72 8.42 16 22 O -0.51 -7.71 14.45 5.33 0.08 -7.63 16 23 N -0.56 -5.80 2.95 -112.23 -0.33 -6.13 16 24 C 0.19 1.76 6.55 -83.65 -0.55 1.21 16 25 C -0.13 -0.95 8.73 -39.40 -0.34 -1.29 16 26 C -0.12 -0.86 10.02 -39.54 -0.40 -1.26 16 27 C 0.07 0.60 7.30 -39.41 -0.29 0.31 16 28 F -0.14 -1.34 17.26 2.25 0.04 -1.30 16 29 C -0.12 -1.04 10.02 -39.54 -0.40 -1.43 16 30 C -0.12 -1.24 9.36 -39.40 -0.37 -1.61 16 31 H 0.08 0.35 5.53 -51.93 -0.29 0.07 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.12 1.55 7.87 -51.93 -0.41 1.14 16 35 H 0.10 1.45 8.00 -51.93 -0.42 1.03 16 36 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.14 0.65 5.70 -52.48 -0.30 0.35 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.17 1.92 5.41 -52.49 -0.28 1.64 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -32.54 368.48 -7.02 -39.56 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.61 Total: -2.62 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -4.04 Total: 4.84 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.89 Total: -47.74 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.17 Total: -14.50 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.54 -7.02 -39.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071855312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.156 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds