Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.53373 * 2 1 4 4 C 1.51582 * 110.60067 * 122.83526 * 2 1 3 5 5 O 1.21233 * 127.15057 * 298.64552 * 4 2 1 6 6 N 1.34767 * 105.68720 * 118.67666 * 4 2 1 7 7 C 1.46503 * 124.17546 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46670 * 90.00836 * 7 6 4 9 9 H 1.08998 * 109.47711 * 54.99950 * 8 7 6 10 10 C 1.47204 * 109.47142 * 294.99270 * 8 7 6 11 11 N 4.63237 * 77.72370 * 134.20520 * 2 1 3 12 12 C 1.53004 * 109.47070 * 175.00138 * 8 7 6 13 13 C 1.50701 * 109.47211 * 185.00010 * 12 8 7 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 8 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 8 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.33791 * 111.64110 * 0.23426 * 6 4 2 22 22 O 1.21548 * 123.76794 * 179.77152 * 21 6 4 23 23 N 1.34524 * 112.46226 * 359.59231 * 21 6 4 24 24 C 1.40044 * 126.68953 * 180.12965 * 23 21 6 25 25 C 1.38854 * 120.04080 * 180.02562 * 24 23 21 26 26 C 1.38116 * 119.95157 * 179.73974 * 25 24 23 27 27 C 1.38470 * 120.04512 * 0.51726 * 26 25 24 28 28 F 1.35101 * 119.95764 * 179.74459 * 27 26 25 29 29 C 1.38471 * 120.08968 * 359.75881 * 27 26 25 30 30 C 1.38119 * 120.04558 * 359.97438 * 29 27 26 31 31 H 1.09000 * 109.47097 * 298.62119 * 1 2 3 32 32 H 1.09003 * 109.47191 * 58.62397 * 1 2 3 33 33 H 1.09008 * 109.47044 * 178.61983 * 1 2 3 34 34 H 1.08999 * 109.47377 * 330.00406 * 7 6 4 35 35 H 1.09000 * 109.46979 * 210.00488 * 7 6 4 36 36 H 1.09000 * 109.47211 * 64.99037 * 12 8 7 37 37 H 1.09007 * 109.46376 * 304.99579 * 12 8 7 38 38 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.02180 * 359.97438 * 25 24 23 40 40 H 1.07996 * 119.97834 * 180.22968 * 26 25 24 41 41 H 1.08001 * 119.97753 * 179.97438 * 29 27 26 42 42 H 1.08001 * 120.02173 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0207 0.0000 4 6 2.0633 -0.7694 1.1922 5 8 1.8873 -0.5168 2.3648 6 7 2.7743 -1.7920 0.6775 7 6 3.4723 -2.7968 1.4834 8 6 2.5308 -3.9699 1.7631 9 1 2.1457 -4.3595 0.8208 10 6 1.4096 -3.5106 2.5991 11 7 0.5450 -3.1560 3.2448 12 6 3.2952 -5.0736 2.4969 13 6 2.4033 -6.2768 2.6637 14 1 1.3923 -6.2562 2.2846 15 6 2.8761 -7.4016 3.3057 16 7 4.1072 -7.4266 3.7676 17 14 1.7681 -8.8902 3.5193 18 1 0.4404 -8.6097 2.9161 19 1 2.3802 -10.0638 2.8459 20 1 1.6025 -9.1806 4.9662 21 6 2.7686 -1.7729 -0.6603 22 8 3.3443 -2.5915 -1.3501 23 7 2.0514 -0.7487 -1.1566 24 6 1.8456 -0.4493 -2.5091 25 6 1.0763 0.6494 -2.8685 26 6 0.8789 0.9461 -4.2029 27 6 1.4387 0.1427 -5.1820 28 9 1.2402 0.4316 -6.4867 29 6 2.2014 -0.9567 -4.8256 30 6 2.4057 -1.2538 -3.4923 31 1 -0.3633 0.4923 0.9021 32 1 -0.3634 0.5351 -0.8774 33 1 -0.3633 -1.0274 -0.0248 34 1 3.7877 -2.3510 2.4267 35 1 4.3471 -3.1545 0.9402 36 1 3.6041 -4.7114 3.4775 37 1 4.1762 -5.3517 1.9182 38 1 4.4397 -8.2178 4.2195 39 1 0.6358 1.2736 -2.1052 40 1 0.2838 1.8027 -4.4830 41 1 2.6368 -1.5824 -5.5907 42 1 3.0010 -2.1111 -3.2147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071855314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -27.459195 kcal Electronic energy + Delta-G solvation = -29709.782749 eV Core-core repulsion = 25377.763328 eV Total energy + Delta-G solvation = -4332.019421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.11548 -42.94658 -39.68776 -38.64816 -37.17468 -36.57614 -35.24798 -33.74475 -32.19333 -31.94866 -31.24922 -29.57903 -27.44945 -25.29091 -24.48878 -23.64234 -23.18379 -21.99449 -21.72131 -20.46972 -18.42702 -17.96644 -17.73571 -17.01201 -16.70820 -16.53822 -16.41342 -15.89510 -15.83839 -15.49681 -14.99180 -14.66741 -14.56520 -14.55537 -14.00432 -13.94920 -13.60715 -13.53626 -13.39472 -13.12805 -12.90277 -12.64314 -12.53152 -12.30446 -12.19081 -11.85122 -11.66430 -11.59938 -11.16376 -10.95394 -10.84447 -10.66982 -10.59693 -10.44392 -10.26564 -10.05370 -9.59265 -9.52017 -9.26466 -8.50861 -8.28473 -6.14857 -4.18385 0.68522 0.83712 1.45454 1.65183 2.52003 2.70826 3.25985 3.29822 3.34299 3.38683 3.51738 3.55049 3.59282 3.96482 4.09715 4.34528 4.37018 4.42486 4.44382 4.58195 4.64477 4.85514 4.95164 5.10948 5.12888 5.22789 5.23996 5.26094 5.30203 5.40580 5.54577 5.64410 5.71135 5.75004 5.92596 6.03376 6.09805 6.17635 6.32488 6.57123 6.84719 7.14864 7.32300 7.40766 7.75120 7.79675 8.14726 8.32938 8.85170 9.47461 10.96037 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.002759 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.365076 B =10144.846948 C =11113.780323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.087 3.913 3 H 0.133 0.867 4 C 0.522 3.478 5 O -0.442 6.442 6 N -0.573 5.573 7 C 0.123 3.877 8 C -0.007 4.007 9 H 0.108 0.892 10 C 0.228 3.772 11 N -0.452 5.452 12 C 0.035 3.965 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.283 1.283 21 C 0.704 3.296 22 O -0.514 6.514 23 N -0.564 5.564 24 C 0.187 3.813 25 C -0.134 4.134 26 C -0.122 4.122 27 C 0.069 3.931 28 F -0.142 7.142 29 C -0.118 4.118 30 C -0.123 4.123 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.030 0.970 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.738 19.411 -16.031 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.020 4.020 3 H 0.151 0.849 4 C 0.307 3.693 5 O -0.309 6.309 6 N -0.318 5.318 7 C 0.003 3.997 8 C -0.030 4.030 9 H 0.125 0.875 10 C -0.089 4.089 11 N -0.128 5.128 12 C -0.004 4.004 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.209 1.209 21 C 0.407 3.593 22 O -0.386 6.386 23 N -0.292 5.292 24 C 0.093 3.907 25 C -0.155 4.155 26 C -0.142 4.142 27 C 0.049 3.951 28 F -0.120 7.120 29 C -0.138 4.138 30 C -0.143 4.143 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.661 19.472 -14.681 24.660 hybrid contribution -0.281 -1.028 -0.199 1.084 sum -3.942 18.445 -14.880 24.024 Atomic orbital electron populations 1.22099 0.90035 1.04726 1.04672 1.22311 0.98395 0.98341 0.82909 0.84933 1.20699 0.77796 0.80834 0.89938 1.90886 1.55397 1.68535 1.16119 1.46623 1.49203 1.28760 1.07208 1.22110 0.95350 0.86496 0.95794 1.19627 0.89459 0.95900 0.97999 0.87459 1.29004 0.94104 0.92122 0.93666 1.81015 1.11682 1.10209 1.09902 1.19171 0.95455 0.90069 0.95677 1.21095 0.98972 0.98438 1.37985 0.92477 1.24935 0.95087 0.98729 0.95110 1.69934 1.15281 1.29443 1.38134 0.86516 0.80872 0.82637 0.77952 1.19703 1.20737 1.20924 1.15794 0.79853 0.81646 0.82039 1.90927 1.46969 1.40410 1.60259 1.45035 1.51178 1.28601 1.04402 1.17405 0.97823 0.95636 0.79823 1.20665 1.01067 0.97454 0.96291 1.20885 1.01295 1.00431 0.91549 1.17697 1.01768 0.97450 0.78181 1.91498 1.93754 1.93228 1.33550 1.21083 0.99049 0.96712 0.96931 1.21445 1.01111 1.01215 0.90563 0.89141 0.89822 0.90921 0.87790 0.86255 0.95171 0.93779 0.92727 0.84265 0.84175 0.84016 0.81617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.25 37.16 0.34 -0.85 16 2 C 0.09 0.76 3.35 -68.20 -0.23 0.53 16 3 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.52 6.64 6.93 -10.56 -0.07 6.56 16 5 O -0.44 -6.95 17.08 5.60 0.10 -6.86 16 6 N -0.57 -7.61 2.49 -120.73 -0.30 -7.91 16 7 C 0.12 1.78 5.13 -4.04 -0.02 1.76 16 8 C -0.01 -0.13 2.42 -93.40 -0.23 -0.36 16 9 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 10 C 0.23 4.67 12.37 -20.76 -0.26 4.42 16 11 N -0.45 -9.98 18.54 42.15 0.78 -9.20 16 12 C 0.03 0.79 4.42 -27.88 -0.12 0.66 16 13 C -0.53 -13.87 8.60 -34.44 -0.30 -14.17 16 14 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.70 9.13 8.23 -88.02 -0.72 8.40 16 22 O -0.51 -7.71 14.44 5.32 0.08 -7.63 16 23 N -0.56 -5.79 2.96 -112.23 -0.33 -6.12 16 24 C 0.19 1.76 6.55 -83.66 -0.55 1.21 16 25 C -0.13 -0.94 8.82 -39.40 -0.35 -1.29 16 26 C -0.12 -0.86 10.02 -39.54 -0.40 -1.26 16 27 C 0.07 0.60 7.30 -39.41 -0.29 0.31 16 28 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 29 C -0.12 -1.04 10.02 -39.54 -0.40 -1.43 16 30 C -0.12 -1.24 9.36 -39.40 -0.37 -1.61 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.44 5.61 -51.93 -0.29 0.14 16 33 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.10 1.45 8.00 -51.93 -0.42 1.03 16 35 H 0.12 1.55 7.85 -51.93 -0.41 1.14 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.14 0.65 5.63 -52.49 -0.30 0.35 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.17 1.92 5.41 -52.49 -0.28 1.64 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -32.41 368.53 -7.03 -39.44 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.61 Total: -2.32 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -4.05 Total: 4.54 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.89 Total: -47.61 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.17 Total: -14.49 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.41 -7.03 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071855314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.976 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds