Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.53373 * 2 1 4 4 C 1.51582 * 110.60067 * 122.83526 * 2 1 3 5 5 O 1.21233 * 127.15057 * 298.64552 * 4 2 1 6 6 N 1.34767 * 105.68720 * 118.67666 * 4 2 1 7 7 C 1.46503 * 124.17546 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46670 * 90.00836 * 7 6 4 9 9 H 1.08998 * 109.47711 * 54.99950 * 8 7 6 10 10 C 1.47204 * 109.47142 * 294.99270 * 8 7 6 11 11 N 4.63237 * 77.72370 * 134.20520 * 2 1 3 12 12 C 1.53004 * 109.47070 * 175.00138 * 8 7 6 13 13 C 1.50701 * 109.47211 * 185.00010 * 12 8 7 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 8 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 8 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.33791 * 111.64110 * 0.23426 * 6 4 2 22 22 O 1.21548 * 123.76794 * 179.77152 * 21 6 4 23 23 N 1.34524 * 112.46226 * 359.59231 * 21 6 4 24 24 C 1.40044 * 126.68953 * 180.12965 * 23 21 6 25 25 C 1.38854 * 120.04080 * 180.02562 * 24 23 21 26 26 C 1.38116 * 119.95157 * 179.73974 * 25 24 23 27 27 C 1.38470 * 120.04512 * 0.51726 * 26 25 24 28 28 F 1.35101 * 119.95764 * 179.74459 * 27 26 25 29 29 C 1.38471 * 120.08968 * 359.75881 * 27 26 25 30 30 C 1.38119 * 120.04558 * 359.97438 * 29 27 26 31 31 H 1.09000 * 109.47097 * 298.62119 * 1 2 3 32 32 H 1.09003 * 109.47191 * 58.62397 * 1 2 3 33 33 H 1.09008 * 109.47044 * 178.61983 * 1 2 3 34 34 H 1.08999 * 109.47377 * 330.00406 * 7 6 4 35 35 H 1.09000 * 109.46979 * 210.00488 * 7 6 4 36 36 H 1.09000 * 109.47211 * 64.99037 * 12 8 7 37 37 H 1.09007 * 109.46376 * 304.99579 * 12 8 7 38 38 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.02180 * 359.97438 * 25 24 23 40 40 H 1.07996 * 119.97834 * 180.22968 * 26 25 24 41 41 H 1.08001 * 119.97753 * 179.97438 * 29 27 26 42 42 H 1.08001 * 120.02173 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0207 0.0000 4 6 2.0633 -0.7694 1.1922 5 8 1.8873 -0.5168 2.3648 6 7 2.7743 -1.7920 0.6775 7 6 3.4723 -2.7968 1.4834 8 6 2.5308 -3.9699 1.7631 9 1 2.1457 -4.3595 0.8208 10 6 1.4096 -3.5106 2.5991 11 7 0.5450 -3.1560 3.2448 12 6 3.2952 -5.0736 2.4969 13 6 2.4033 -6.2768 2.6637 14 1 1.3923 -6.2562 2.2846 15 6 2.8761 -7.4016 3.3057 16 7 4.1072 -7.4266 3.7676 17 14 1.7681 -8.8902 3.5193 18 1 0.4404 -8.6097 2.9161 19 1 2.3802 -10.0638 2.8459 20 1 1.6025 -9.1806 4.9662 21 6 2.7686 -1.7729 -0.6603 22 8 3.3443 -2.5915 -1.3501 23 7 2.0514 -0.7487 -1.1566 24 6 1.8456 -0.4493 -2.5091 25 6 1.0763 0.6494 -2.8685 26 6 0.8789 0.9461 -4.2029 27 6 1.4387 0.1427 -5.1820 28 9 1.2402 0.4316 -6.4867 29 6 2.2014 -0.9567 -4.8256 30 6 2.4057 -1.2538 -3.4923 31 1 -0.3633 0.4923 0.9021 32 1 -0.3634 0.5351 -0.8774 33 1 -0.3633 -1.0274 -0.0248 34 1 3.7877 -2.3510 2.4267 35 1 4.3471 -3.1545 0.9402 36 1 3.6041 -4.7114 3.4775 37 1 4.1762 -5.3517 1.9182 38 1 4.4397 -8.2178 4.2195 39 1 0.6358 1.2736 -2.1052 40 1 0.2838 1.8027 -4.4830 41 1 2.6368 -1.5824 -5.5907 42 1 3.0010 -2.1111 -3.2147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071855314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = -45.023554 kcal Electronic energy + Delta-G solvation = -29710.544397 eV Core-core repulsion = 25377.763328 eV Total energy + Delta-G solvation = -4332.781069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.80078 -43.88846 -40.51024 -39.59537 -38.55946 -37.61653 -36.51128 -35.50674 -33.75033 -32.75149 -31.95984 -30.50389 -28.90238 -26.49133 -25.60847 -24.33823 -24.12829 -23.75165 -22.55093 -21.39480 -19.31993 -18.91764 -18.67043 -18.44144 -18.04700 -17.65630 -17.40203 -17.03673 -16.57680 -16.51470 -16.32126 -15.87158 -15.69640 -15.28549 -15.13818 -14.99826 -14.64260 -14.46055 -14.38280 -14.20357 -14.05249 -13.96497 -13.60095 -13.52528 -13.20621 -13.12269 -12.99302 -12.95520 -12.72388 -12.58281 -12.40380 -12.18600 -11.81345 -11.48091 -11.41404 -11.39930 -11.23040 -10.86350 -10.58952 -10.13238 -9.00482 -8.23334 -6.31691 -0.03946 0.22412 0.53419 0.73640 1.36964 1.39884 1.49943 1.63464 1.71524 1.86586 1.91700 2.38762 2.62830 2.72231 3.03534 3.13622 3.33213 3.37397 3.68641 3.84123 3.85504 3.86459 3.96278 4.00621 4.15744 4.25051 4.31334 4.38766 4.56890 4.62932 4.63967 4.74011 4.77159 4.95399 5.07001 5.16631 5.23393 5.30788 5.34908 5.39143 5.52516 5.73010 5.85352 5.96730 6.12674 6.18765 6.65482 6.77899 6.80853 7.36820 8.87729 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.002759 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.365076 B =10144.846948 C =11113.780323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.096 3.904 3 H 0.176 0.824 4 C 0.516 3.484 5 O -0.477 6.477 6 N -0.577 5.577 7 C 0.131 3.869 8 C 0.004 3.996 9 H 0.112 0.888 10 C 0.238 3.762 11 N -0.479 5.479 12 C 0.042 3.958 13 C -0.540 4.540 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.948 3.052 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.283 1.283 21 C 0.699 3.301 22 O -0.541 6.541 23 N -0.556 5.556 24 C 0.171 3.829 25 C -0.118 4.118 26 C -0.113 4.113 27 C 0.059 3.941 28 F -0.148 7.148 29 C -0.123 4.123 30 C -0.140 4.140 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.011 0.989 37 H 0.043 0.957 38 H 0.265 0.735 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 21.494 -17.323 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 H 0.193 0.807 4 C 0.304 3.696 5 O -0.346 6.346 6 N -0.321 5.321 7 C 0.009 3.991 8 C -0.018 4.018 9 H 0.130 0.870 10 C -0.079 4.079 11 N -0.156 5.156 12 C 0.003 3.997 13 C -0.579 4.579 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.774 3.226 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.209 1.209 21 C 0.403 3.597 22 O -0.415 6.415 23 N -0.283 5.283 24 C 0.078 3.922 25 C -0.139 4.139 26 C -0.132 4.132 27 C 0.039 3.961 28 F -0.126 7.126 29 C -0.143 4.143 30 C -0.160 4.160 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.029 0.971 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.190 0.810 40 H 0.187 0.813 41 H 0.166 0.834 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.950 21.583 -16.009 27.324 hybrid contribution 0.101 -1.646 0.136 1.655 sum -4.849 19.937 -15.872 25.941 Atomic orbital electron populations 1.22147 0.88699 1.03818 1.06511 1.22541 0.99124 0.99132 0.80089 0.80748 1.21387 0.77000 0.80664 0.90576 1.90870 1.56575 1.69395 1.17798 1.46613 1.49349 1.28686 1.07498 1.21901 0.94724 0.85766 0.96722 1.19504 0.89012 0.96327 0.96984 0.87011 1.29380 0.93958 0.91361 0.93240 1.81002 1.12662 1.11310 1.10656 1.18965 0.95279 0.90296 0.95170 1.21475 0.99152 0.99797 1.37431 0.93112 1.25672 0.96309 1.01377 0.95156 1.70017 1.16578 1.30281 1.39034 0.85645 0.79263 0.79918 0.77763 1.19590 1.19717 1.20890 1.15902 0.80090 0.82096 0.81657 1.90920 1.48289 1.41650 1.60643 1.45029 1.50345 1.27783 1.05142 1.17610 0.98934 0.96689 0.78988 1.20958 0.99520 0.96338 0.97050 1.21224 1.00399 1.00539 0.90994 1.17909 1.02100 0.97771 0.78339 1.91486 1.93812 1.93253 1.34096 1.21142 0.99287 0.97200 0.96642 1.21310 1.01940 1.01295 0.91452 0.88556 0.86594 0.93301 0.87330 0.84824 0.97059 0.93911 0.92549 0.81037 0.81270 0.83381 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.25 71.98 0.67 -1.19 16 2 C 0.10 1.41 3.35 44.37 0.15 1.56 16 3 H 0.18 1.19 8.14 -2.39 -0.02 1.18 16 4 C 0.52 12.52 6.93 87.94 0.61 13.13 16 5 O -0.48 -14.70 17.08 -2.89 -0.05 -14.75 16 6 N -0.58 -15.01 2.49 -773.12 -1.92 -16.94 16 7 C 0.13 3.76 5.13 86.38 0.44 4.21 16 8 C 0.00 0.16 2.42 -12.60 -0.03 0.13 16 9 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 10 C 0.24 9.81 12.37 89.44 1.11 10.92 16 11 N -0.48 -21.34 18.54 20.01 0.37 -20.97 16 12 C 0.04 1.92 4.42 29.85 0.13 2.05 16 13 C -0.54 -28.80 8.60 25.60 0.22 -28.58 16 14 H 0.05 2.71 7.59 -2.91 -0.02 2.69 16 15 C 0.01 0.78 5.46 84.65 0.46 1.25 16 16 N -0.92 -52.48 13.29 21.45 0.28 -52.19 16 17 Si 0.95 43.65 29.54 68.60 2.03 45.67 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 C 0.70 17.72 8.23 179.44 1.48 19.20 16 22 O -0.54 -16.42 14.44 -3.87 -0.06 -16.48 16 23 N -0.56 -10.31 2.96 -627.42 -1.85 -12.16 16 24 C 0.17 2.84 6.55 38.12 0.25 3.09 16 25 C -0.12 -1.18 8.82 22.39 0.20 -0.98 16 26 C -0.11 -1.15 10.02 22.30 0.22 -0.93 16 27 C 0.06 0.89 7.30 22.38 0.16 1.06 16 28 F -0.15 -2.53 17.27 44.97 0.78 -1.75 16 29 C -0.12 -2.06 10.02 22.30 0.22 -1.84 16 30 C -0.14 -2.73 9.36 22.39 0.21 -2.52 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.12 0.63 5.61 -2.39 -0.01 0.62 16 33 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.11 3.04 8.00 -2.39 -0.02 3.02 16 35 H 0.13 3.46 7.85 -2.39 -0.02 3.45 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.17 0.56 5.63 -2.91 -0.02 0.54 16 40 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.15 3.49 5.41 -2.91 -0.02 3.47 16 Total: -1.00 -71.54 368.53 7.16 -64.38 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.08 Total: 4.66 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 6.50 Total: 20.53 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -3.12 Total: -102.26 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.11 Total: -31.23 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.54 7.16 -64.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071855314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.360 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds