Wall clock time and date at job start Tue Mar 31 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53502 * 2 1 4 4 C 1.51583 * 110.59736 * 237.00627 * 2 1 3 5 5 O 1.21240 * 127.15759 * 61.50829 * 4 2 1 6 6 N 1.34765 * 105.68465 * 241.46798 * 4 2 1 7 7 C 1.46496 * 124.17806 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.46953 * 90.00275 * 7 6 4 9 9 H 1.08997 * 109.47424 * 305.00229 * 8 7 6 10 10 C 1.47204 * 109.46813 * 65.00280 * 8 7 6 11 11 N 5.20596 * 154.36332 * 167.52853 * 2 1 3 12 12 C 1.53001 * 109.47283 * 184.99698 * 8 7 6 13 13 C 1.50704 * 109.47201 * 174.99945 * 12 8 7 14 14 H 1.07991 * 119.99755 * 0.02562 * 13 12 8 15 15 C 1.37875 * 119.99629 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00559 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99696 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46980 * 60.00259 * 17 15 13 19 19 H 1.48500 * 109.47229 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47110 * 300.00579 * 17 15 13 21 21 C 1.33795 * 111.64645 * 359.76991 * 6 4 2 22 22 O 1.21540 * 123.77405 * 180.24387 * 21 6 4 23 23 N 1.34527 * 112.45445 * 0.40495 * 21 6 4 24 24 C 1.40050 * 126.68951 * 179.87142 * 23 21 6 25 25 C 1.38848 * 120.04286 * 179.97438 * 24 23 21 26 26 C 1.38115 * 119.95347 * 180.25784 * 25 24 23 27 27 C 1.38481 * 120.04275 * 359.48686 * 26 25 24 28 28 F 1.35098 * 119.95368 * 180.23537 * 27 26 25 29 29 C 1.38471 * 120.08898 * 0.25792 * 27 26 25 30 30 C 1.38117 * 120.04446 * 0.02562 * 29 27 26 31 31 H 1.09006 * 109.46930 * 297.16729 * 1 2 3 32 32 H 1.08994 * 109.47457 * 57.16575 * 1 2 3 33 33 H 1.09001 * 109.47022 * 177.17009 * 1 2 3 34 34 H 1.09003 * 109.47776 * 210.00524 * 7 6 4 35 35 H 1.09002 * 109.47229 * 330.01086 * 7 6 4 36 36 H 1.08996 * 109.47335 * 295.00457 * 12 8 7 37 37 H 1.09007 * 109.47029 * 55.00622 * 12 8 7 38 38 H 0.97003 * 120.00056 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.02652 * 359.97438 * 25 24 23 40 40 H 1.08002 * 119.98157 * 179.77188 * 26 25 24 41 41 H 1.07996 * 119.97799 * 180.02562 * 29 27 26 42 42 H 1.07998 * 120.02040 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0633 -0.7727 -1.1901 5 8 1.8894 -0.5220 -2.3635 6 7 2.7716 -1.7957 -0.6726 7 6 3.4685 -2.8035 -1.4755 8 6 4.8974 -2.3334 -1.7557 9 1 4.8711 -1.3485 -2.2217 10 6 5.6459 -2.2578 -0.4904 11 7 6.2235 -2.1993 0.4864 12 6 5.5852 -3.3247 -2.6965 13 6 6.9476 -2.8000 -3.0702 14 1 7.2889 -1.8545 -2.6757 15 6 7.7583 -3.5274 -3.9157 16 7 7.3424 -4.6786 -4.3965 17 14 9.4474 -2.8774 -4.3783 18 1 10.2668 -2.7107 -3.1510 19 1 10.1144 -3.8388 -5.2926 20 1 9.3036 -1.5656 -5.0593 21 6 2.7642 -1.7742 0.6652 22 8 3.3375 -2.5925 1.3573 23 7 2.0484 -0.7476 1.1586 24 6 1.8413 -0.4452 2.5103 25 6 1.0739 0.6557 2.8667 26 6 0.8753 0.9554 4.2002 27 6 1.4322 0.1526 5.1816 28 9 1.2329 0.4446 6.4855 29 6 2.1935 -0.9488 4.8282 30 6 2.3993 -1.2485 3.4958 31 1 -0.3633 0.4693 0.9143 32 1 -0.3634 0.5572 -0.8634 33 1 -0.3633 -1.0264 -0.0507 34 1 3.4967 -3.7469 -0.9302 35 1 2.9411 -2.9448 -2.4189 36 1 5.6911 -4.2871 -2.1960 37 1 4.9837 -3.4478 -3.5973 38 1 7.9126 -5.1901 -4.9917 39 1 0.6363 1.2799 2.1016 40 1 0.2815 1.8137 4.4779 41 1 2.6267 -1.5739 5.5951 42 1 2.9935 -2.1073 3.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071855315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:37 Heat of formation + Delta-G solvation = -27.009673 kcal Electronic energy + Delta-G solvation = -29726.338133 eV Core-core repulsion = 25394.338205 eV Total energy + Delta-G solvation = -4331.999928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.09723 -42.94067 -39.66941 -38.65442 -37.16748 -36.54485 -35.19861 -33.72689 -32.19697 -31.93582 -31.23658 -29.57922 -27.44658 -25.29461 -24.50264 -23.63841 -23.13218 -21.97092 -21.73284 -20.46952 -18.44518 -17.96368 -17.66628 -17.09521 -16.65612 -16.60598 -16.28094 -15.89174 -15.80665 -15.42686 -15.13198 -14.66241 -14.56037 -14.50161 -14.05645 -13.94371 -13.62169 -13.47319 -13.34896 -13.09658 -12.92955 -12.61719 -12.55935 -12.35511 -12.14996 -11.82174 -11.64372 -11.55607 -11.14753 -10.94860 -10.85912 -10.64533 -10.60393 -10.42213 -10.25249 -10.05529 -9.58455 -9.49761 -9.28379 -8.49866 -8.26087 -6.14337 -4.18065 0.70859 0.86051 1.43702 1.66333 2.52435 2.72478 3.28893 3.32264 3.33242 3.36887 3.56035 3.59449 3.63603 3.98220 4.09668 4.32261 4.36977 4.43571 4.45681 4.60983 4.65931 4.87204 4.95628 5.06551 5.12573 5.20874 5.23099 5.24925 5.32871 5.44049 5.50917 5.60326 5.67170 5.75875 5.95974 6.05250 6.09157 6.20362 6.32504 6.59652 6.86153 7.12283 7.31622 7.41528 7.77607 7.80200 8.15119 8.40397 8.85035 9.47618 10.96451 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.002722 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.071023 B =10282.657905 C =11306.842296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.084 3.916 3 H 0.134 0.866 4 C 0.528 3.472 5 O -0.450 6.450 6 N -0.572 5.572 7 C 0.123 3.877 8 C -0.006 4.006 9 H 0.105 0.895 10 C 0.228 3.772 11 N -0.449 5.449 12 C 0.035 3.965 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.065 3.935 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.698 3.302 22 O -0.506 6.506 23 N -0.565 5.565 24 C 0.188 3.812 25 C -0.134 4.134 26 C -0.122 4.122 27 C 0.069 3.931 28 F -0.142 7.142 29 C -0.118 4.118 30 C -0.122 4.122 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.520 10.876 12.122 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 H 0.151 0.849 4 C 0.314 3.686 5 O -0.318 6.318 6 N -0.317 5.317 7 C 0.002 3.998 8 C -0.029 4.029 9 H 0.123 0.877 10 C -0.089 4.089 11 N -0.125 5.125 12 C -0.003 4.003 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.401 3.599 22 O -0.377 6.377 23 N -0.293 5.293 24 C 0.094 3.906 25 C -0.155 4.155 26 C -0.142 4.142 27 C 0.049 3.951 28 F -0.120 7.120 29 C -0.138 4.138 30 C -0.143 4.143 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.338 10.428 13.215 24.893 hybrid contribution 0.892 0.366 -0.510 1.091 sum -17.447 10.794 12.705 24.131 Atomic orbital electron populations 1.22092 0.90021 1.04524 1.04738 1.22338 0.98322 0.98592 0.82971 0.84898 1.20626 0.77542 0.80619 0.89803 1.90856 1.56479 1.68461 1.15976 1.46625 1.48838 1.29055 1.07225 1.22120 0.91596 0.89922 0.96164 1.19602 0.90291 1.04836 0.88170 0.87715 1.28903 0.93528 0.92806 0.93698 1.81022 1.09740 1.09168 1.12578 1.19158 0.95515 0.92787 0.92861 1.21020 1.00360 1.06279 1.28984 0.92577 1.24931 0.98379 0.94767 0.95729 1.69917 1.37390 1.13030 1.32481 0.86631 0.84064 0.78796 0.78473 1.20209 1.21096 1.20012 1.15860 0.79801 0.82025 0.82189 1.90962 1.46123 1.40574 1.60010 1.45017 1.51494 1.28375 1.04396 1.17396 0.97734 0.95630 0.79863 1.20645 1.01256 0.97316 0.96311 1.20880 1.01409 1.00361 0.91529 1.17690 1.01812 0.97391 0.78210 1.91495 1.93735 1.93163 1.33637 1.21078 0.98955 0.96786 0.96941 1.21449 1.00741 1.01449 0.90615 0.89841 0.89069 0.91032 0.87670 0.86366 0.95113 0.93881 0.92614 0.84206 0.84142 0.84092 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.28 37.16 0.34 -0.51 16 2 C 0.08 0.70 3.35 -68.20 -0.23 0.47 16 3 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.53 6.10 7.65 -10.56 -0.08 6.02 16 5 O -0.45 -6.09 17.76 5.59 0.10 -6.00 16 6 N -0.57 -7.60 2.50 -120.73 -0.30 -7.90 16 7 C 0.12 1.77 5.14 -4.04 -0.02 1.75 16 8 C -0.01 -0.12 2.42 -93.40 -0.23 -0.34 16 9 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 10 C 0.23 4.78 12.17 -20.75 -0.25 4.53 16 11 N -0.45 -10.24 18.48 42.17 0.78 -9.46 16 12 C 0.04 0.80 4.42 -27.88 -0.12 0.68 16 13 C -0.53 -13.93 8.60 -34.44 -0.30 -14.22 16 14 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.70 9.79 7.58 -88.02 -0.67 9.13 16 22 O -0.51 -8.61 13.45 5.33 0.07 -8.53 16 23 N -0.56 -6.13 2.95 -112.23 -0.33 -6.46 16 24 C 0.19 1.93 6.55 -83.65 -0.55 1.38 16 25 C -0.13 -1.01 8.73 -39.40 -0.34 -1.35 16 26 C -0.12 -0.93 10.02 -39.54 -0.40 -1.32 16 27 C 0.07 0.65 7.30 -39.41 -0.29 0.37 16 28 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 29 C -0.12 -1.18 10.02 -39.54 -0.40 -1.58 16 30 C -0.12 -1.41 9.36 -39.40 -0.37 -1.78 16 31 H 0.08 0.33 5.53 -51.93 -0.29 0.04 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 1.51 7.87 -51.93 -0.41 1.10 16 35 H 0.12 1.48 8.00 -51.93 -0.42 1.06 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.14 0.66 5.70 -52.48 -0.30 0.36 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.17 2.26 5.41 -52.49 -0.28 1.98 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -32.88 367.98 -6.98 -39.86 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.61 Total: -2.31 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -3.99 Total: 4.86 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.88 Total: -48.22 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.17 Total: -14.53 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.88 -6.98 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071855315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.852 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds