Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.65011 * 2 1 4 4 C 1.51573 * 110.59924 * 122.91244 * 2 1 3 5 5 O 1.21243 * 127.16000 * 298.56631 * 4 2 1 6 6 N 1.34766 * 105.68653 * 118.30212 * 4 2 1 7 7 C 1.46498 * 124.17938 * 180.26095 * 6 4 2 8 8 C 1.53003 * 109.47188 * 90.00044 * 7 6 4 9 9 H 1.08999 * 109.47190 * 305.00353 * 8 7 6 10 10 C 1.47201 * 109.47256 * 65.00046 * 8 7 6 11 11 N 5.20310 * 94.23835 * 185.37956 * 2 1 3 12 12 C 1.52998 * 109.47399 * 184.99985 * 8 7 6 13 13 C 1.50704 * 109.47388 * 174.99972 * 12 8 7 14 14 H 1.08001 * 119.99556 * 0.02562 * 13 12 8 15 15 C 1.37868 * 119.99891 * 179.97438 * 13 12 8 16 16 N 1.31519 * 120.00497 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99965 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47389 * 89.99491 * 17 15 13 19 19 H 1.48500 * 109.47292 * 210.00193 * 17 15 13 20 20 H 1.48508 * 109.46899 * 329.99926 * 17 15 13 21 21 C 1.33795 * 111.64200 * 0.22633 * 6 4 2 22 22 O 1.21545 * 123.76697 * 179.97438 * 21 6 4 23 23 N 1.34523 * 112.45569 * 359.97438 * 21 6 4 24 24 C 1.40048 * 126.68497 * 180.02562 * 23 21 6 25 25 C 1.38846 * 120.04269 * 179.70446 * 24 23 21 26 26 C 1.38119 * 119.95674 * 179.79112 * 25 24 23 27 27 C 1.38467 * 120.04138 * 0.48549 * 26 25 24 28 28 F 1.35102 * 119.95643 * 179.72258 * 27 26 25 29 29 C 1.38471 * 120.09184 * 359.74013 * 27 26 25 30 30 C 1.38113 * 120.04411 * 0.02884 * 29 27 26 31 31 H 1.09004 * 109.47577 * 298.54284 * 1 2 3 32 32 H 1.09002 * 109.47579 * 58.54272 * 1 2 3 33 33 H 1.09007 * 109.47152 * 178.53881 * 1 2 3 34 34 H 1.08996 * 109.47229 * 209.99923 * 7 6 4 35 35 H 1.08997 * 109.47185 * 330.00410 * 7 6 4 36 36 H 1.09003 * 109.47390 * 295.00378 * 12 8 7 37 37 H 1.09004 * 109.47209 * 55.00107 * 12 8 7 38 38 H 0.97000 * 119.99976 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.02308 * 359.97438 * 25 24 23 40 40 H 1.07997 * 119.98105 * 180.22904 * 26 25 24 41 41 H 1.08001 * 119.98344 * 180.02562 * 29 27 26 42 42 H 1.07999 * 120.02625 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0633 -0.7709 1.1911 5 8 1.8884 -0.5193 2.3642 6 7 2.7673 -1.7977 0.6750 7 6 3.4578 -2.8088 1.4794 8 6 2.5079 -3.9757 1.7569 9 1 1.5961 -3.5995 2.2208 10 6 2.1729 -4.6476 0.4907 11 7 1.9145 -5.1660 -0.4865 12 6 3.1858 -4.9723 2.6992 13 6 2.2084 -6.0577 3.0702 14 1 1.2042 -6.0388 2.6732 15 6 2.5965 -7.0754 3.9155 16 7 3.8198 -7.0992 4.3978 17 14 1.3852 -8.4212 4.3748 18 1 1.4849 -9.5325 3.3948 19 1 1.7018 -8.9296 5.7337 20 1 0.0057 -7.8714 4.3610 21 6 2.7571 -1.7799 -0.6628 22 8 3.3232 -2.6042 -1.3537 23 7 2.0502 -0.7479 -1.1576 24 6 1.8448 -0.4462 -2.5097 25 6 1.0816 0.6570 -2.8676 26 6 0.8837 0.9553 -4.2016 27 6 1.4376 0.1492 -5.1818 28 9 1.2384 0.4393 -6.4861 29 6 2.1953 -0.9542 -4.8269 30 6 2.3994 -1.2532 -3.4941 31 1 -0.3634 0.4910 0.9028 32 1 -0.3634 0.5363 -0.8766 33 1 -0.3634 -1.0274 -0.0262 34 1 4.3301 -3.1718 0.9361 35 1 3.7758 -2.3668 2.4237 36 1 4.0483 -5.4148 2.2007 37 1 3.5134 -4.4547 3.6009 38 1 4.0927 -7.8150 4.9929 39 1 0.6453 1.2832 -2.1034 40 1 0.2932 1.8154 -4.4805 41 1 2.6269 -1.5816 -5.5929 42 1 2.9901 -2.1141 -3.2177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071855318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = -27.260224 kcal Electronic energy + Delta-G solvation = -29790.579320 eV Core-core repulsion = 25458.568527 eV Total energy + Delta-G solvation = -4332.010793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.09544 -42.93917 -39.66703 -38.65169 -37.16429 -36.54633 -35.20372 -33.73155 -32.18681 -31.93157 -31.23568 -29.56403 -27.44902 -25.25518 -24.52587 -23.63276 -23.15074 -21.95057 -21.75813 -20.46213 -18.45303 -17.94222 -17.54821 -17.04652 -16.85887 -16.64694 -16.27162 -15.84605 -15.80561 -15.47317 -15.02788 -14.62997 -14.55224 -14.52369 -14.03457 -13.95855 -13.57955 -13.53290 -13.35948 -13.06402 -12.91053 -12.62908 -12.53567 -12.31525 -12.16133 -11.82427 -11.64517 -11.55553 -11.14346 -10.96807 -10.85802 -10.63920 -10.59536 -10.43333 -10.25214 -10.04947 -9.58777 -9.49591 -9.27594 -8.50480 -8.26004 -6.14752 -4.18403 0.71013 0.86237 1.43479 1.66399 2.52726 2.73040 3.27338 3.32361 3.34027 3.37077 3.55779 3.59767 3.63226 3.98317 4.10301 4.34262 4.36858 4.44058 4.45174 4.60700 4.66165 4.87450 4.96570 5.10277 5.13041 5.22462 5.23951 5.26130 5.32804 5.44378 5.54862 5.63638 5.67559 5.76372 5.96084 6.05329 6.09235 6.20323 6.32323 6.59770 6.86274 7.12353 7.31482 7.41278 7.77557 7.80055 8.14770 8.39887 8.84928 9.47375 10.96089 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.002721 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.014555 B =10288.527363 C =11071.540396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.086 3.914 3 H 0.134 0.866 4 C 0.528 3.472 5 O -0.450 6.450 6 N -0.572 5.572 7 C 0.122 3.878 8 C -0.006 4.006 9 H 0.105 0.895 10 C 0.229 3.771 11 N -0.449 5.449 12 C 0.035 3.965 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.698 3.302 22 O -0.506 6.506 23 N -0.565 5.565 24 C 0.187 3.813 25 C -0.134 4.134 26 C -0.123 4.123 27 C 0.069 3.931 28 F -0.142 7.142 29 C -0.118 4.118 30 C -0.122 4.122 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 21.521 -12.116 25.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 H 0.151 0.849 4 C 0.314 3.686 5 O -0.318 6.318 6 N -0.317 5.317 7 C 0.002 3.998 8 C -0.029 4.029 9 H 0.123 0.877 10 C -0.089 4.089 11 N -0.125 5.125 12 C -0.004 4.004 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.401 3.599 22 O -0.377 6.377 23 N -0.293 5.293 24 C 0.094 3.906 25 C -0.155 4.155 26 C -0.142 4.142 27 C 0.049 3.951 28 F -0.120 7.120 29 C -0.138 4.138 30 C -0.143 4.143 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.070 20.262 -13.209 24.527 hybrid contribution -0.555 -0.650 0.505 0.992 sum -4.625 19.612 -12.705 23.821 Atomic orbital electron populations 1.22112 0.90022 1.04740 1.04751 1.22324 0.98390 0.98408 0.82952 0.84862 1.20646 0.77517 0.80646 0.89832 1.90856 1.55846 1.69060 1.16026 1.46627 1.49601 1.28292 1.07227 1.22120 0.95365 0.86198 0.96140 1.19598 1.00641 0.94487 0.88153 0.87725 1.28892 0.93047 0.93267 0.93698 1.81010 1.09239 1.09684 1.12597 1.19164 0.96189 0.92158 0.92855 1.21055 0.98129 1.08494 1.28871 0.92531 1.24933 0.95275 0.97897 0.95736 1.69929 1.17191 1.33159 1.32531 0.86571 0.81463 0.82119 0.77808 1.20603 1.21000 1.19743 1.15862 0.80094 0.81740 0.82182 1.90962 1.46833 1.39800 1.60101 1.45026 1.51736 1.28129 1.04405 1.17395 0.97825 0.95557 0.79855 1.20646 1.01157 0.97389 0.96294 1.20877 1.01351 1.00426 0.91539 1.17687 1.01831 0.97380 0.78198 1.91496 1.93729 1.93214 1.33596 1.21077 0.99102 0.96666 0.96929 1.21449 1.01084 1.01094 0.90626 0.88979 0.89873 0.90883 0.87665 0.86366 0.95112 0.93873 0.92673 0.84221 0.84147 0.84095 0.81771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.25 37.16 0.34 -0.71 16 2 C 0.09 0.71 3.34 -68.21 -0.23 0.48 16 3 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.53 6.08 7.65 -10.56 -0.08 6.00 16 5 O -0.45 -6.09 17.76 5.59 0.10 -5.99 16 6 N -0.57 -7.59 2.49 -120.73 -0.30 -7.90 16 7 C 0.12 1.77 5.14 -4.04 -0.02 1.74 16 8 C -0.01 -0.11 2.42 -93.41 -0.23 -0.34 16 9 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 10 C 0.23 4.77 12.19 -20.76 -0.25 4.51 16 11 N -0.45 -10.20 18.50 42.15 0.78 -9.42 16 12 C 0.03 0.79 4.42 -27.88 -0.12 0.66 16 13 C -0.53 -13.87 8.60 -34.44 -0.30 -14.17 16 14 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 17 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.70 9.78 7.58 -88.02 -0.67 9.11 16 22 O -0.51 -8.60 13.49 5.33 0.07 -8.53 16 23 N -0.57 -6.12 2.95 -112.24 -0.33 -6.45 16 24 C 0.19 1.93 6.55 -83.65 -0.55 1.38 16 25 C -0.13 -1.00 8.81 -39.40 -0.35 -1.35 16 26 C -0.12 -0.93 10.02 -39.54 -0.40 -1.33 16 27 C 0.07 0.66 7.30 -39.41 -0.29 0.37 16 28 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 29 C -0.12 -1.18 10.02 -39.54 -0.40 -1.58 16 30 C -0.12 -1.41 9.36 -39.40 -0.37 -1.78 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.40 5.63 -51.93 -0.29 0.10 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.51 7.86 -51.93 -0.41 1.11 16 35 H 0.12 1.48 8.00 -51.93 -0.42 1.06 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.14 0.66 5.66 -52.48 -0.30 0.36 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.17 2.26 5.41 -52.49 -0.28 1.98 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -32.81 368.16 -6.98 -39.80 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -4.61 Total: -2.10 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -3.99 Total: 4.66 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.88 Total: -48.14 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.17 Total: -14.52 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.81 -6.98 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071855318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.535 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds