Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00423 * 2 1 4 4 C 1.50701 * 109.47164 * 275.00408 * 3 2 1 5 5 O 1.21297 * 119.99912 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00505 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99822 * 4.73018 * 6 4 3 8 8 C 1.50700 * 109.47457 * 270.00654 * 7 6 4 9 9 H 1.08002 * 119.99601 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00123 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99966 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00078 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46807 * 59.99936 * 12 10 8 14 14 H 1.48496 * 109.47161 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46889 * 300.00372 * 12 10 8 16 16 C 1.40029 * 120.00429 * 184.73644 * 6 4 3 17 17 C 1.38849 * 120.04594 * 67.63838 * 16 6 4 18 18 C 1.38112 * 119.95571 * 179.72453 * 17 16 6 19 19 C 1.38469 * 120.04443 * 0.55038 * 18 17 16 20 20 F 1.35099 * 119.95758 * 179.70475 * 19 18 17 21 21 C 1.38476 * 120.09159 * 359.72205 * 19 18 17 22 22 C 1.38115 * 120.04287 * 0.02562 * 21 19 18 23 23 S 1.65602 * 120.00046 * 179.97438 * 2 1 3 24 24 C 1.81397 * 104.45271 * 270.00305 * 23 2 1 25 25 O 1.42107 * 104.27434 * 26.07646 * 23 2 1 26 26 O 1.42100 * 104.27444 * 153.92667 * 23 2 1 27 27 H 1.08997 * 109.47095 * 89.99899 * 1 2 3 28 28 H 1.08998 * 109.47233 * 210.00529 * 1 2 3 29 29 H 1.09003 * 109.46895 * 330.00622 * 1 2 3 30 30 H 1.08997 * 109.47512 * 154.99585 * 3 2 1 31 31 H 1.09008 * 109.46893 * 34.99188 * 3 2 1 32 32 H 1.08996 * 109.46793 * 30.00439 * 7 6 4 33 33 H 1.09004 * 109.47073 * 150.00226 * 7 6 4 34 34 H 0.97003 * 120.00094 * 180.02562 * 11 10 8 35 35 H 1.08002 * 120.01859 * 359.97438 * 17 16 6 36 36 H 1.08005 * 119.97913 * 180.25059 * 18 17 16 37 37 H 1.08003 * 119.98106 * 179.97438 * 21 19 18 38 38 H 1.07998 * 120.02353 * 179.97438 * 22 21 19 39 39 H 1.09003 * 109.46876 * 59.99751 * 24 23 2 40 40 H 1.08999 * 109.47263 * 179.97438 * 24 23 2 41 41 H 1.09003 * 109.47032 * 300.00072 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 8 1.8781 1.1231 -2.3339 6 7 2.9859 2.9236 -1.6609 7 6 3.6361 3.6466 -0.5650 8 6 2.6573 4.6138 0.0493 9 1 1.6515 4.6833 -0.3381 10 6 3.0457 5.4099 1.1059 11 7 4.2705 5.3255 1.5772 12 14 1.8325 6.6093 1.8670 13 1 0.6614 5.8623 2.3921 14 1 2.4913 7.3411 2.9786 15 1 1.3804 7.5773 0.8356 16 6 3.0339 3.4358 -2.9633 17 6 1.8741 3.8958 -3.5726 18 6 1.9246 4.4058 -4.8551 19 6 3.1287 4.4482 -5.5374 20 9 3.1750 4.9419 -6.7941 21 6 4.2856 3.9847 -4.9337 22 6 4.2403 3.4787 -3.6494 23 16 2.2930 -1.4341 0.0006 24 6 2.5193 -1.8255 1.7574 25 8 1.3969 -2.3564 -0.6043 26 8 3.5394 -1.1194 -0.6048 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 3.1858 1.1177 0.4344 31 1 1.6501 2.0044 0.5894 32 1 3.9687 2.9363 0.1919 33 1 4.4953 4.1951 -0.9510 34 1 4.5437 5.8853 2.3208 35 1 0.9339 3.8585 -3.0424 36 1 1.0234 4.7675 -5.3279 37 1 5.2237 4.0181 -5.4677 38 1 5.1426 3.1169 -3.1790 39 1 1.5450 -1.9179 2.2374 40 1 3.0618 -2.7660 1.8532 41 1 3.0866 -1.0279 2.2372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071893405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = -106.103325 kcal Electronic energy + Delta-G solvation = -28681.499694 eV Core-core repulsion = 24411.106775 eV Total energy + Delta-G solvation = -4270.392919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.104 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.61359 -39.96887 -38.06536 -37.03351 -35.88320 -35.58228 -34.96356 -32.72783 -30.84638 -29.86163 -29.54259 -28.12196 -27.04058 -25.05532 -23.34353 -22.54310 -22.16338 -19.52402 -18.55885 -17.58580 -17.41250 -16.99556 -16.79253 -16.39082 -16.09550 -15.88862 -15.73669 -15.28311 -14.64634 -14.48722 -14.36014 -14.00403 -13.70124 -13.42766 -13.26531 -13.25291 -13.03162 -12.83413 -12.67363 -12.51913 -12.30270 -12.05144 -11.96583 -11.89567 -11.63023 -11.47869 -11.32440 -11.16467 -10.96736 -10.88287 -10.81207 -10.36320 -9.97389 -9.78691 -8.83513 -8.77385 -8.65675 -8.54940 -7.71485 -6.31832 -4.40677 0.25482 1.45210 1.57169 2.63813 3.14332 3.16556 3.21261 3.24568 3.64371 3.93120 3.98396 4.14758 4.22158 4.55760 4.59043 4.82153 4.88267 5.01619 5.06447 5.11678 5.23587 5.42164 5.52331 5.57858 5.63285 5.70369 5.79397 5.88480 6.00565 6.06984 6.18978 6.40720 6.47005 6.48921 6.64478 6.78512 6.99964 7.09292 7.50452 7.63016 7.87286 8.06064 8.62430 8.82716 9.27796 10.74702 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.007682 B = 0.004979 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3644.155166 B = 5622.231197 C = 8212.963186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.985 5.985 3 C 0.113 3.887 4 C 0.508 3.492 5 O -0.544 6.544 6 N -0.562 5.562 7 C 0.236 3.764 8 C -0.544 4.544 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.888 5.888 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.169 3.831 17 C -0.079 4.079 18 C -0.144 4.144 19 C 0.079 3.921 20 F -0.147 7.147 21 C -0.144 4.144 22 C -0.095 4.095 23 S 2.610 3.390 24 C -0.677 4.677 25 O -0.955 6.955 26 O -0.946 6.946 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.268 0.732 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.432 -7.682 -0.027 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.822 5.822 3 C -0.016 4.016 4 C 0.296 3.704 5 O -0.421 6.421 6 N -0.291 5.291 7 C 0.118 3.882 8 C -0.582 4.582 9 H 0.081 0.919 10 C -0.135 4.135 11 N -0.525 5.525 12 Si 0.725 3.275 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.078 3.922 17 C -0.099 4.099 18 C -0.164 4.164 19 C 0.060 3.940 20 F -0.126 7.126 21 C -0.163 4.163 22 C -0.115 4.115 23 S 2.701 3.299 24 C -0.826 4.826 25 O -0.945 6.945 26 O -0.936 6.936 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.280 -8.422 -1.090 9.103 hybrid contribution -0.574 1.211 1.128 1.752 sum -3.855 -7.210 0.038 8.176 Atomic orbital electron populations 1.21458 0.78020 1.02365 1.02901 1.57087 1.15332 1.20442 1.89345 1.21216 0.98885 0.86296 0.95171 1.21021 0.77380 0.80277 0.91745 1.90652 1.48777 1.56596 1.46095 1.45981 1.53963 1.22287 1.06870 1.19629 0.93539 0.91972 0.83053 1.21397 0.98614 1.21874 1.16337 0.91891 1.24922 0.95362 0.96812 0.96453 1.69903 1.17029 1.39726 1.25876 0.86560 0.80954 0.81148 0.78850 1.20044 1.21091 1.20042 1.17596 0.93053 0.95845 0.85747 1.21077 0.98706 0.96041 0.94086 1.20910 0.96809 1.03214 0.95452 1.17622 0.95008 1.01066 0.80349 1.91451 1.97308 1.85731 1.38113 1.20892 0.97450 1.02034 0.95953 1.21106 0.98266 0.98878 0.93231 1.05024 0.74162 0.73328 0.77367 1.30630 1.11637 1.12028 1.28350 1.93586 1.64734 1.62819 1.73387 1.93629 1.44212 1.82687 1.73119 0.91872 0.91408 0.90841 0.87133 0.85621 0.93842 0.93973 0.92254 0.85220 0.84980 0.84856 0.84822 0.85516 0.85659 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 10.22 59.85 0.61 1.77 16 2 N -0.99 -13.84 2.61 -123.05 -0.32 -14.16 16 3 C 0.11 1.81 4.42 -5.19 -0.02 1.79 16 4 C 0.51 10.11 7.59 -10.99 -0.08 10.03 16 5 O -0.54 -12.06 16.17 5.54 0.09 -11.97 16 6 N -0.56 -11.41 2.51 -114.71 -0.29 -11.70 16 7 C 0.24 5.17 4.88 -5.19 -0.03 5.14 16 8 C -0.54 -12.83 9.16 -34.44 -0.32 -13.14 16 9 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 10 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -22.67 13.29 55.43 0.74 -21.93 16 12 Si 0.90 19.08 29.54 -169.99 -5.02 14.05 16 13 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 14 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 C 0.17 3.30 4.76 -83.66 -0.40 2.90 16 17 C -0.08 -1.44 9.53 -39.40 -0.38 -1.81 16 18 C -0.14 -2.31 10.02 -39.54 -0.40 -2.71 16 19 C 0.08 1.27 7.30 -39.41 -0.29 0.98 16 20 F -0.15 -2.29 17.26 2.25 0.04 -2.25 16 21 C -0.14 -2.26 10.02 -39.54 -0.40 -2.65 16 22 C -0.10 -1.67 9.69 -39.40 -0.38 -2.05 16 23 S 2.61 35.44 5.96 -107.50 -0.64 34.80 16 24 C -0.68 -5.63 10.99 101.05 1.11 -4.52 16 25 O -0.95 -15.43 17.09 -57.54 -0.98 -16.41 16 26 O -0.95 -16.56 16.99 -57.54 -0.98 -17.54 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 29 H 0.07 0.75 7.94 -51.93 -0.41 0.33 16 30 H 0.11 1.64 6.72 -51.93 -0.35 1.30 16 31 H 0.13 1.90 7.74 -51.92 -0.40 1.50 16 32 H 0.04 0.94 6.47 -51.93 -0.34 0.60 16 33 H 0.04 0.99 7.86 -51.93 -0.41 0.58 16 34 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 36 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.12 0.85 8.14 -51.92 -0.42 0.42 16 41 H 0.13 0.98 8.14 -51.92 -0.42 0.55 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -32.76 372.23 -8.05 -40.81 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.24 Total: 3.39 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.06 Total: -2.70 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.13 Total: -47.79 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.87 Total: -45.93 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 35.44 SS G_CDS: -0.64 Total: 34.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.76 -8.05 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071893405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.291 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds