Wall clock time and date at job start Tue Mar 31 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50701 * 120.00293 * 2 1 4 4 N 1.46498 * 109.47171 * 124.99766 * 3 2 1 5 5 C 1.35065 * 125.56537 * 269.96018 * 4 3 2 6 6 O 1.21291 * 127.28468 * 359.97438 * 5 4 3 7 7 C 1.49983 * 105.42976 * 179.83294 * 5 4 3 8 8 O 1.21296 * 127.28690 * 180.25602 * 7 5 4 9 9 N 1.35070 * 105.43237 * 0.33060 * 7 5 4 10 10 C 1.46497 * 125.57027 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47129 * 269.69399 * 10 9 7 12 12 O 1.42894 * 109.47195 * 64.99258 * 11 10 9 13 13 C 1.35675 * 116.99838 * 179.97438 * 12 11 10 14 14 C 1.39314 * 119.82011 * 359.73070 * 13 12 11 15 15 C 1.36439 * 120.18292 * 179.75515 * 14 13 12 16 16 C 1.40822 * 119.81377 * 0.51915 * 15 14 13 17 17 C 1.41217 * 120.17917 * 179.72005 * 16 15 14 18 18 H 1.08003 * 119.99950 * 204.57032 * 17 16 15 19 19 C 1.39893 * 120.00321 * 24.56038 * 17 16 15 20 20 N 1.30877 * 119.99459 * 17.92923 * 19 17 16 21 21 Si 1.86798 * 120.00302 * 197.92666 * 19 17 16 22 22 H 1.48497 * 109.47007 * 60.00177 * 21 19 17 23 23 H 1.48495 * 109.46950 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47046 * 300.00041 * 21 19 17 25 25 C 1.40836 * 119.64307 * 359.73623 * 16 15 14 26 26 C 1.36434 * 119.81058 * 0.02562 * 25 16 15 27 27 C 1.34271 * 125.56612 * 89.99467 * 4 3 2 28 28 O 1.21484 * 124.29761 * 359.95237 * 27 4 3 29 29 H 1.08006 * 119.99352 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00125 * 180.02562 * 1 2 3 31 31 H 1.07992 * 119.99483 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46562 * 4.99942 * 3 2 1 33 33 H 1.09000 * 109.46707 * 244.99952 * 3 2 1 34 34 H 1.09000 * 109.47324 * 149.69155 * 10 9 7 35 35 H 1.08997 * 109.46806 * 29.68964 * 10 9 7 36 36 H 1.08998 * 109.46915 * 185.00132 * 11 10 9 37 37 H 1.09008 * 109.46606 * 304.99925 * 11 10 9 38 38 H 1.07999 * 119.90264 * 0.02590 * 14 13 12 39 39 H 1.08002 * 120.08764 * 180.25201 * 15 14 13 40 40 H 0.97001 * 119.99773 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.09190 * 179.97438 * 25 16 15 42 42 H 1.07996 * 119.90659 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0637 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.7135 1.7970 2.3681 6 8 1.6646 2.2663 2.7563 7 6 3.9725 1.6070 3.1608 8 8 4.1566 1.8885 4.3262 9 7 4.8586 1.0578 2.3019 10 6 6.2396 0.6889 2.6225 11 6 7.1631 1.8756 2.3398 12 8 6.8432 2.9498 3.2261 13 6 7.5753 4.0858 3.1065 14 6 8.5888 4.1597 2.1536 15 6 9.3263 5.3003 2.0236 16 6 9.0677 6.4007 2.8634 17 6 9.8302 7.5829 2.7394 18 1 9.9295 8.2522 3.5813 19 6 10.4572 7.8870 1.5264 20 7 10.0723 7.2949 0.4245 21 14 11.8436 9.1380 1.4793 22 1 12.9541 8.6793 2.3519 23 1 12.3359 9.2790 0.0855 24 1 11.3432 10.4498 1.9633 25 6 8.0449 6.3159 3.8277 26 6 7.3134 5.1698 3.9415 27 6 4.2646 0.8986 1.1082 28 8 4.8079 0.4229 0.1313 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4025 -0.9314 34 1 6.5408 -0.1601 2.0088 35 1 6.3082 0.4182 3.6760 36 1 8.1993 1.5742 2.4932 37 1 7.0287 2.2030 1.3088 38 1 8.7884 3.3134 1.5131 39 1 10.1089 5.3573 1.2815 40 1 10.5067 7.5060 -0.4167 41 1 7.8407 7.1553 4.4758 42 1 6.5289 5.1029 4.6808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071899330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:27 Heat of formation + Delta-G solvation = -45.803710 kcal Electronic energy + Delta-G solvation = -29256.209852 eV Core-core repulsion = 24976.448074 eV Total energy + Delta-G solvation = -4279.761777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.52622 -39.43880 -39.23797 -38.68586 -36.70500 -36.67377 -36.03427 -34.13912 -33.33341 -30.92669 -29.66529 -29.01234 -27.52374 -25.76812 -24.92590 -23.94041 -22.25440 -21.80707 -21.03146 -20.47504 -20.20586 -18.16535 -17.86380 -17.41445 -17.28160 -16.99604 -16.80810 -16.30129 -15.52993 -15.49114 -15.26396 -14.96355 -14.71002 -14.60601 -14.24787 -13.96705 -13.85660 -13.31124 -12.90018 -12.87743 -12.70613 -12.57220 -12.35004 -11.96476 -11.93585 -11.55084 -11.45335 -11.20961 -11.09496 -11.05962 -10.65796 -10.44324 -10.35915 -10.07872 -9.97894 -9.92117 -9.82618 -9.39259 -9.03760 -7.68131 -7.05263 -6.75446 -4.27839 0.15331 1.29788 1.78818 2.06512 2.30761 2.42403 2.75335 2.94636 3.06173 3.08932 3.20431 3.68920 3.88912 3.93457 4.25778 4.36437 4.58808 4.63733 4.82427 4.87783 4.88664 5.01693 5.13203 5.15099 5.38919 5.46747 5.58166 5.64165 5.73104 6.06669 6.07746 6.14904 6.26171 6.37919 6.48448 6.67485 6.86859 7.02281 7.04358 7.25493 7.31064 7.37781 7.53335 7.87447 7.97647 8.12402 8.39455 8.61413 8.87703 8.96117 10.19386 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.002393 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.845490 B =11699.856288 C =11996.252603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.186 4.186 3 C 0.148 3.852 4 N -0.572 5.572 5 C 0.510 3.490 6 O -0.413 6.413 7 C 0.509 3.491 8 O -0.390 6.390 9 N -0.569 5.569 10 C 0.127 3.873 11 C 0.045 3.955 12 O -0.324 6.324 13 C -0.013 4.013 14 C -0.172 4.172 15 C -0.135 4.135 16 C 0.089 3.911 17 C -0.463 4.463 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.799 5.799 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.197 4.197 26 C -0.109 4.109 27 C 0.711 3.289 28 O -0.491 6.491 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.280 0.720 41 H 0.100 0.900 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.471 -15.474 -2.796 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.205 4.205 3 C 0.029 3.971 4 N -0.321 5.321 5 C 0.291 3.709 6 O -0.277 6.277 7 C 0.289 3.711 8 O -0.252 6.252 9 N -0.318 5.318 10 C 0.007 3.993 11 C -0.032 4.032 12 O -0.240 6.240 13 C -0.056 4.056 14 C -0.191 4.191 15 C -0.155 4.155 16 C 0.086 3.914 17 C -0.492 4.492 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.425 5.425 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.216 4.216 26 C -0.128 4.128 27 C 0.414 3.586 28 O -0.360 6.360 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.733 -15.328 -2.582 20.094 hybrid contribution 0.849 0.556 -0.519 1.140 sum -11.884 -14.772 -3.100 19.211 Atomic orbital electron populations 1.24008 0.95563 1.02713 0.97104 1.23139 0.96358 0.98258 1.02764 1.20892 0.91207 0.97469 0.87516 1.46759 1.13236 1.58429 1.13718 1.21051 0.89409 0.77831 0.82622 1.90824 1.26351 1.36800 1.73720 1.20704 0.85275 0.78133 0.87001 1.90869 1.79187 1.41795 1.13326 1.46662 1.15004 1.58746 1.11381 1.21989 0.75364 0.97542 1.04399 1.22867 0.98298 0.87315 0.94751 1.85853 1.58821 1.22072 1.57284 1.18521 0.98017 0.86898 1.02151 1.20597 0.99247 0.99258 1.00015 1.20934 1.00866 0.91497 1.02156 1.17601 0.90264 0.92759 0.90747 1.19450 1.26744 1.05625 0.97423 0.90490 1.25885 0.96674 0.96643 0.95009 1.69830 1.35671 1.37797 0.99243 0.86373 0.81441 0.80960 0.77980 1.18874 1.20417 1.19034 1.20603 0.99385 0.96893 1.04760 1.19624 1.01264 0.92365 0.99565 1.15939 0.80797 0.78182 0.83633 1.91016 1.66729 1.44851 1.33439 0.87857 0.87646 0.86508 0.87666 0.86985 0.86427 0.87160 0.90590 0.92128 0.88789 0.86098 0.90912 0.88198 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 14.32 29.01 0.42 -0.49 16 2 C -0.19 -1.29 9.85 -36.03 -0.35 -1.65 16 3 C 0.15 1.16 6.30 -5.19 -0.03 1.13 16 4 N -0.57 -6.06 2.64 -122.51 -0.32 -6.39 16 5 C 0.51 6.36 8.31 -11.20 -0.09 6.26 16 6 O -0.41 -5.83 17.88 5.55 0.10 -5.73 16 7 C 0.51 6.96 8.10 -11.20 -0.09 6.87 16 8 O -0.39 -6.39 17.88 5.54 0.10 -6.29 16 9 N -0.57 -6.91 2.62 -121.22 -0.32 -7.23 16 10 C 0.13 1.36 6.25 -4.04 -0.03 1.34 16 11 C 0.04 0.65 5.07 37.16 0.19 0.84 16 12 O -0.32 -6.30 9.86 -18.73 -0.18 -6.48 16 13 C -0.01 -0.29 6.71 -38.78 -0.26 -0.55 16 14 C -0.17 -3.97 8.96 -39.83 -0.36 -4.32 16 15 C -0.14 -3.48 8.64 -39.25 -0.34 -3.82 16 16 C 0.09 2.36 5.57 -106.81 -0.60 1.77 16 17 C -0.46 -12.25 9.04 -37.83 -0.34 -12.59 16 18 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 19 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 20 N -0.80 -20.62 10.96 55.54 0.61 -20.01 16 21 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 25 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 26 C -0.11 -2.57 9.92 -39.83 -0.40 -2.97 16 27 C 0.71 8.38 8.32 -87.81 -0.73 7.65 16 28 O -0.49 -6.47 17.27 5.38 0.09 -6.38 16 29 H 0.10 0.54 7.84 -52.48 -0.41 0.13 16 30 H 0.11 0.49 8.06 -52.49 -0.42 0.06 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.11 0.72 7.75 -51.93 -0.40 0.31 16 33 H 0.11 0.79 7.98 -51.93 -0.41 0.37 16 34 H 0.12 0.92 7.98 -51.93 -0.41 0.50 16 35 H 0.11 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.08 1.00 7.63 -51.93 -0.40 0.61 16 37 H 0.06 0.93 7.66 -51.92 -0.40 0.54 16 38 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 39 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -31.48 376.06 -7.52 -39.01 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.75 Total: 4.23 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.48 Total: -4.02 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: -0.03 Total: -33.62 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.11 Total: -24.88 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.48 -7.52 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071899330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.796 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds