Wall clock time and date at job start Tue Mar 31 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38305 * 119.93242 * 2 1 4 4 C 1.38092 * 120.07071 * 179.70046 * 3 2 1 5 5 C 1.38888 * 119.92836 * 0.52909 * 4 3 2 6 6 N 1.39927 * 120.07223 * 179.74780 * 5 4 3 7 7 C 1.46503 * 119.99848 * 9.26421 * 6 5 4 8 8 C 1.50702 * 109.47005 * 72.56359 * 7 6 5 9 9 H 1.07994 * 119.99618 * 234.03575 * 8 7 6 10 10 C 1.37876 * 119.99895 * 53.76060 * 8 7 6 11 11 N 1.31520 * 120.00125 * 346.67107 * 10 8 7 12 12 Si 1.86793 * 119.99920 * 166.67599 * 10 8 7 13 13 H 1.48498 * 109.47534 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47228 * 120.00177 * 12 10 8 15 15 H 1.48508 * 109.47015 * 239.99773 * 12 10 8 16 16 C 1.34773 * 120.00282 * 189.27051 * 6 5 4 17 17 O 1.21289 * 119.99726 * 5.02090 * 16 6 5 18 18 C 1.50698 * 120.00069 * 185.02214 * 16 6 5 19 19 C 1.53003 * 109.47219 * 187.93326 * 18 16 6 20 20 C 1.50701 * 109.47130 * 180.02562 * 19 18 16 21 21 C 1.33635 * 122.74837 * 124.73248 * 20 19 18 22 22 S 1.76203 * 107.92133 * 179.97438 * 21 20 19 23 23 C 1.70972 * 90.28072 * 0.27474 * 22 21 20 24 24 N 1.29022 * 110.17174 * 359.84002 * 23 22 21 25 25 C 1.38855 * 119.86091 * 359.47137 * 5 4 3 26 26 C 1.38138 * 119.92731 * 0.27007 * 25 5 4 27 27 C 1.50695 * 119.96274 * 179.97438 * 26 25 5 28 28 H 1.09002 * 109.47312 * 270.02640 * 1 2 3 29 29 H 1.09008 * 109.47044 * 30.02437 * 1 2 3 30 30 H 1.08994 * 109.47379 * 150.02300 * 1 2 3 31 31 H 1.07998 * 119.95793 * 359.97099 * 3 2 1 32 32 H 1.07999 * 120.03493 * 180.29621 * 4 3 2 33 33 H 1.09007 * 109.47109 * 312.56325 * 7 6 5 34 34 H 1.08997 * 109.47006 * 192.56255 * 7 6 5 35 35 H 0.96994 * 120.00088 * 185.02152 * 11 10 8 36 36 H 1.08991 * 109.47297 * 307.93594 * 18 16 6 37 37 H 1.09001 * 109.46823 * 67.93894 * 18 16 6 38 38 H 1.09004 * 109.46841 * 300.00199 * 19 18 16 39 39 H 1.09004 * 109.47171 * 59.99894 * 19 18 16 40 40 H 1.08003 * 126.04421 * 0.04031 * 21 20 19 41 41 H 1.08010 * 124.91404 * 179.83577 * 23 22 21 42 42 H 1.08001 * 120.03531 * 180.30361 * 25 5 4 43 43 H 1.09005 * 109.46991 * 90.00906 * 27 26 25 44 44 H 1.08999 * 109.47162 * 210.00502 * 27 26 25 45 45 H 1.08996 * 109.47329 * 330.00736 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5780 1.2019 0.0062 5 6 4.2738 -0.0001 0.0014 6 7 5.6731 -0.0002 0.0024 7 6 6.4055 1.2511 0.2127 8 6 6.2870 1.6659 1.6566 9 1 5.9257 2.6524 1.9071 10 6 6.6344 0.7841 2.6580 11 7 6.8155 -0.4885 2.3799 12 14 6.8476 1.3969 4.4096 13 1 6.5896 2.8585 4.4577 14 1 5.8884 0.6950 5.2998 15 1 8.2349 1.1244 4.8640 16 6 6.3471 -1.1512 -0.1902 17 8 5.7442 -2.1699 -0.4548 18 6 7.8496 -1.1727 -0.0769 19 6 8.3759 -2.5358 -0.5306 20 6 9.8785 -2.5575 -0.4166 21 6 10.5370 -3.4848 0.2850 22 16 12.2603 -3.1418 0.1536 23 6 11.9234 -1.7809 -0.8250 24 7 10.6503 -1.6597 -0.9955 25 6 3.5781 -1.2017 0.0014 26 6 2.1967 -1.1983 0.0006 27 6 1.4408 -2.5019 0.0000 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6553 2.1328 -0.0005 32 1 4.1162 2.1382 0.0111 33 1 5.9857 2.0294 -0.4246 34 1 7.4560 1.1037 -0.0379 35 1 6.9881 -1.1213 3.0944 36 1 8.2728 -0.3914 -0.7082 37 1 8.1383 -0.9984 0.9596 38 1 7.9527 -3.3171 0.1008 39 1 8.0872 -2.7102 -1.5671 40 1 10.0917 -4.3010 0.8345 41 1 12.6686 -1.1184 -1.2403 42 1 4.1164 -2.1380 0.0026 43 1 1.2578 -2.8163 1.0276 44 1 0.4890 -2.3698 -0.5144 45 1 2.0288 -3.2627 -0.5134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:40 Heat of formation + Delta-G solvation = 44.626954 kcal Electronic energy + Delta-G solvation = -27940.467674 eV Core-core repulsion = 24243.213230 eV Total energy + Delta-G solvation = -3697.254444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.94174 -39.52060 -37.89039 -35.25044 -33.29944 -32.48128 -31.62146 -30.99981 -29.43688 -27.94590 -26.47715 -25.87878 -24.96303 -23.41124 -23.02322 -21.37577 -19.95535 -19.35835 -18.29188 -17.67535 -16.92814 -16.29739 -15.71148 -15.41200 -14.96281 -14.70184 -14.61200 -14.33367 -13.91979 -13.69784 -13.32743 -13.18013 -13.02954 -12.90985 -12.45741 -12.41640 -12.27462 -12.15394 -11.97193 -11.80214 -11.45654 -11.38243 -11.15393 -11.02518 -10.91403 -10.81981 -10.73840 -10.39622 -10.17097 -9.99508 -9.77775 -9.51965 -9.35636 -8.91642 -8.69177 -8.50506 -8.19039 -7.82900 -6.69221 -6.18918 -4.40681 0.85080 1.50341 1.82410 2.20649 2.31944 2.98289 3.14675 3.25469 3.28388 3.83897 4.20555 4.22425 4.37903 4.81050 5.03394 5.22698 5.35016 5.45745 5.47590 5.51881 5.63663 5.77589 5.85483 5.91598 5.93475 5.98064 5.99183 6.13192 6.23279 6.28951 6.29714 6.37797 6.43042 6.52195 6.62423 6.70890 6.73909 6.94063 7.00192 7.20539 7.25418 7.38750 7.49902 7.58221 7.70441 7.88444 7.91555 8.21837 8.57357 8.74953 9.26905 9.40458 10.70480 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.003523 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.266308 B = 7945.654428 C = 9375.773506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.145 4.145 3 C -0.102 4.102 4 C -0.155 4.155 5 C 0.201 3.799 6 N -0.514 5.514 7 C 0.216 3.784 8 C -0.539 4.539 9 H 0.066 0.934 10 C 0.078 3.922 11 N -0.871 5.871 12 Si 0.896 3.104 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.281 1.281 16 C 0.558 3.442 17 O -0.570 6.570 18 C -0.129 4.129 19 C -0.030 4.030 20 C 0.082 3.918 21 C -0.252 4.252 22 S 0.086 5.914 23 C 0.023 3.977 24 N -0.460 5.460 25 C -0.169 4.169 26 C -0.077 4.077 27 C -0.108 4.108 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.267 0.733 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.176 0.824 41 H 0.197 0.803 42 H 0.170 0.830 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -3.832 -4.554 6.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.146 4.146 3 C -0.121 4.121 4 C -0.176 4.176 5 C 0.103 3.897 6 N -0.231 5.231 7 C 0.097 3.903 8 C -0.577 4.577 9 H 0.084 0.916 10 C -0.126 4.126 11 N -0.508 5.508 12 Si 0.724 3.276 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.207 1.207 16 C 0.351 3.649 17 O -0.453 6.453 18 C -0.169 4.169 19 C -0.070 4.070 20 C -0.049 4.049 21 C -0.391 4.391 22 S 0.337 5.663 23 C -0.276 4.276 24 N -0.173 5.173 25 C -0.188 4.188 26 C -0.078 4.078 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.158 0.842 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.194 0.806 41 H 0.213 0.787 42 H 0.187 0.813 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.172 -4.461 -4.578 7.632 hybrid contribution -0.632 0.554 1.306 1.553 sum 3.540 -3.907 -3.271 6.205 Atomic orbital electron populations 1.20672 0.92636 1.01496 1.01113 1.19444 0.94915 0.93004 1.07239 1.20579 0.93546 0.96578 1.01378 1.20771 0.93722 0.97179 1.05914 1.17904 0.83612 0.93515 0.94658 1.46140 1.03083 1.10587 1.63292 1.19710 0.92737 0.81469 0.96383 1.21416 1.44743 1.00756 0.90743 0.91553 1.24994 0.93468 0.94662 0.99509 1.69754 1.46698 1.01549 1.32817 0.86465 0.77870 0.79302 0.83997 1.19570 1.21001 1.20701 1.20239 0.90010 0.81924 0.72725 1.90262 1.69761 1.34241 1.51061 1.21971 0.91788 0.95818 1.07286 1.20023 0.84954 0.99533 1.02519 1.20553 0.98315 0.90542 0.95489 1.26839 0.94704 1.07567 1.09956 1.83856 1.07868 1.26161 1.48391 1.28382 0.96048 1.01010 1.02155 1.66125 1.03093 1.26100 1.21995 1.22271 0.93111 1.00305 1.03141 1.19571 0.93679 0.94026 1.00502 1.20744 0.99323 0.94895 1.01477 0.92456 0.92730 0.92126 0.87227 0.85951 0.94990 0.93250 0.92310 0.90517 0.84180 0.89745 0.90676 0.80626 0.78660 0.81313 0.92033 0.92053 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.60 36.00 0.35 -1.09 16 2 C -0.14 -2.63 5.88 -104.59 -0.62 -3.25 16 3 C -0.10 -1.92 9.69 -39.61 -0.38 -2.30 16 4 C -0.16 -3.29 8.97 -39.39 -0.35 -3.64 16 5 C 0.20 4.67 6.28 -83.69 -0.53 4.14 16 6 N -0.51 -12.08 2.13 -114.73 -0.24 -12.32 16 7 C 0.22 4.93 5.15 -5.19 -0.03 4.91 16 8 C -0.54 -13.35 8.69 -34.44 -0.30 -13.64 16 9 H 0.07 1.65 7.85 -52.49 -0.41 1.23 16 10 C 0.08 1.96 5.41 -17.82 -0.10 1.87 16 11 N -0.87 -22.05 8.03 55.43 0.45 -21.60 16 12 Si 0.90 20.07 29.56 -169.99 -5.03 15.04 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.56 12.93 6.03 -10.99 -0.07 12.86 16 17 O -0.57 -13.80 12.51 5.55 0.07 -13.73 16 18 C -0.13 -2.66 4.05 -27.88 -0.11 -2.77 16 19 C -0.03 -0.53 5.04 -27.88 -0.14 -0.67 16 20 C 0.08 1.33 6.08 -84.23 -0.51 0.81 16 21 C -0.25 -3.47 11.07 29.12 0.32 -3.14 16 22 S 0.09 0.96 23.22 -107.50 -2.50 -1.53 16 23 C 0.02 0.28 12.23 51.58 0.63 0.91 16 24 N -0.46 -7.34 10.34 -11.90 -0.12 -7.46 16 25 C -0.17 -3.82 8.61 -39.39 -0.34 -4.15 16 26 C -0.08 -1.50 5.88 -104.65 -0.62 -2.12 16 27 C -0.11 -1.69 9.60 36.00 0.35 -1.35 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.68 8.08 -51.92 -0.42 0.26 16 30 H 0.06 0.76 5.94 -51.93 -0.31 0.46 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.12 2.54 6.21 -52.49 -0.33 2.21 16 33 H 0.03 0.68 6.86 -51.92 -0.36 0.32 16 34 H 0.05 1.11 5.72 -51.93 -0.30 0.82 16 35 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 36 H 0.08 1.56 6.83 -51.93 -0.35 1.21 16 37 H 0.14 3.20 5.51 -51.93 -0.29 2.91 16 38 H 0.08 1.51 7.90 -51.93 -0.41 1.10 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.18 2.09 8.06 -52.48 -0.42 1.66 16 41 H 0.20 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.17 4.10 4.79 -54.81 -0.26 3.84 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.82 5.94 -51.93 -0.31 0.51 16 45 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -28.52 372.00 -10.04 -38.57 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.83 Total: 10.07 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.44 Total: -12.63 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.08 Total: -41.39 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.07 Total: -13.73 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.52 -10.04 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.195 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds