Wall clock time and date at job start Tue Mar 31 2020 05:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38305 * 119.93242 * 2 1 4 4 C 1.38092 * 120.07071 * 179.70046 * 3 2 1 5 5 C 1.38888 * 119.92836 * 0.52909 * 4 3 2 6 6 N 1.39927 * 120.07223 * 179.74780 * 5 4 3 7 7 C 1.46503 * 119.99848 * 9.26421 * 6 5 4 8 8 C 1.50702 * 109.47005 * 72.56359 * 7 6 5 9 9 H 1.07994 * 119.99618 * 234.03575 * 8 7 6 10 10 C 1.37876 * 119.99895 * 53.76060 * 8 7 6 11 11 N 1.31520 * 120.00125 * 346.67107 * 10 8 7 12 12 Si 1.86793 * 119.99920 * 166.67599 * 10 8 7 13 13 H 1.48498 * 109.47534 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47228 * 120.00177 * 12 10 8 15 15 H 1.48508 * 109.47015 * 239.99773 * 12 10 8 16 16 C 1.34773 * 120.00282 * 189.27051 * 6 5 4 17 17 O 1.21289 * 119.99726 * 5.02090 * 16 6 5 18 18 C 1.50698 * 120.00069 * 185.02214 * 16 6 5 19 19 C 1.53003 * 109.47219 * 187.93326 * 18 16 6 20 20 C 1.50701 * 109.47130 * 180.02562 * 19 18 16 21 21 C 1.33635 * 122.74837 * 124.73248 * 20 19 18 22 22 S 1.76203 * 107.92133 * 179.97438 * 21 20 19 23 23 C 1.70972 * 90.28072 * 0.27474 * 22 21 20 24 24 N 1.29022 * 110.17174 * 359.84002 * 23 22 21 25 25 C 1.38855 * 119.86091 * 359.47137 * 5 4 3 26 26 C 1.38138 * 119.92731 * 0.27007 * 25 5 4 27 27 C 1.50695 * 119.96274 * 179.97438 * 26 25 5 28 28 H 1.09002 * 109.47312 * 270.02640 * 1 2 3 29 29 H 1.09008 * 109.47044 * 30.02437 * 1 2 3 30 30 H 1.08994 * 109.47379 * 150.02300 * 1 2 3 31 31 H 1.07998 * 119.95793 * 359.97099 * 3 2 1 32 32 H 1.07999 * 120.03493 * 180.29621 * 4 3 2 33 33 H 1.09007 * 109.47109 * 312.56325 * 7 6 5 34 34 H 1.08997 * 109.47006 * 192.56255 * 7 6 5 35 35 H 0.96994 * 120.00088 * 185.02152 * 11 10 8 36 36 H 1.08991 * 109.47297 * 307.93594 * 18 16 6 37 37 H 1.09001 * 109.46823 * 67.93894 * 18 16 6 38 38 H 1.09004 * 109.46841 * 300.00199 * 19 18 16 39 39 H 1.09004 * 109.47171 * 59.99894 * 19 18 16 40 40 H 1.08003 * 126.04421 * 0.04031 * 21 20 19 41 41 H 1.08010 * 124.91404 * 179.83577 * 23 22 21 42 42 H 1.08001 * 120.03531 * 180.30361 * 25 5 4 43 43 H 1.09005 * 109.46991 * 90.00906 * 27 26 25 44 44 H 1.08999 * 109.47162 * 210.00502 * 27 26 25 45 45 H 1.08996 * 109.47329 * 330.00736 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5780 1.2019 0.0062 5 6 4.2738 -0.0001 0.0014 6 7 5.6731 -0.0002 0.0024 7 6 6.4055 1.2511 0.2127 8 6 6.2870 1.6659 1.6566 9 1 5.9257 2.6524 1.9071 10 6 6.6344 0.7841 2.6580 11 7 6.8155 -0.4885 2.3799 12 14 6.8476 1.3969 4.4096 13 1 6.5896 2.8585 4.4577 14 1 5.8884 0.6950 5.2998 15 1 8.2349 1.1244 4.8640 16 6 6.3471 -1.1512 -0.1902 17 8 5.7442 -2.1699 -0.4548 18 6 7.8496 -1.1727 -0.0769 19 6 8.3759 -2.5358 -0.5306 20 6 9.8785 -2.5575 -0.4166 21 6 10.5370 -3.4848 0.2850 22 16 12.2603 -3.1418 0.1536 23 6 11.9234 -1.7809 -0.8250 24 7 10.6503 -1.6597 -0.9955 25 6 3.5781 -1.2017 0.0014 26 6 2.1967 -1.1983 0.0006 27 6 1.4408 -2.5019 0.0000 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6553 2.1328 -0.0005 32 1 4.1162 2.1382 0.0111 33 1 5.9857 2.0294 -0.4246 34 1 7.4560 1.1037 -0.0379 35 1 6.9881 -1.1213 3.0944 36 1 8.2728 -0.3914 -0.7082 37 1 8.1383 -0.9984 0.9596 38 1 7.9527 -3.3171 0.1008 39 1 8.0872 -2.7102 -1.5671 40 1 10.0917 -4.3010 0.8345 41 1 12.6686 -1.1184 -1.2403 42 1 4.1164 -2.1380 0.0026 43 1 1.2578 -2.8163 1.0276 44 1 0.4890 -2.3698 -0.5144 45 1 2.0288 -3.2627 -0.5134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071900165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:39 Heat of formation + Delta-G solvation = 31.296217 kcal Electronic energy + Delta-G solvation = -27941.045738 eV Core-core repulsion = 24243.213230 eV Total energy + Delta-G solvation = -3697.832508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53871 -40.74453 -39.47365 -37.02163 -34.89706 -34.10098 -33.16762 -32.48460 -30.70295 -29.69688 -27.95651 -27.28364 -26.13158 -24.90507 -24.75787 -22.92747 -21.50051 -20.49075 -20.01054 -18.81590 -18.75034 -17.87194 -17.36797 -16.80198 -16.67046 -16.19078 -16.12251 -15.83026 -15.31784 -15.00612 -14.81171 -14.63535 -14.38408 -14.20014 -14.06901 -13.87245 -13.71665 -13.59525 -13.49015 -13.27111 -13.00908 -12.89105 -12.65487 -12.57692 -12.52708 -12.32878 -12.21195 -11.99402 -11.77869 -11.68646 -11.53981 -10.73341 -10.56348 -10.38445 -10.30190 -9.99120 -9.67078 -9.40948 -8.43274 -8.03235 -6.36422 -0.16637 0.53418 0.62064 0.71869 0.80325 1.34764 1.40925 1.49599 1.84126 2.09331 2.35629 2.50479 3.11303 3.20272 3.35423 3.89853 4.11871 4.13344 4.15282 4.31607 4.37941 4.43736 4.45141 4.46705 4.62126 4.63659 4.73230 4.73452 4.79220 4.86506 4.95054 5.02481 5.06323 5.08065 5.11686 5.17009 5.28281 5.30231 5.40737 5.47599 5.69369 5.74099 5.74467 5.96897 5.97461 6.09788 6.51702 6.66088 6.83842 6.96790 7.33034 7.60512 8.77014 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.003523 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.266308 B = 7945.654428 C = 9375.773506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.141 4.141 3 C -0.101 4.101 4 C -0.170 4.170 5 C 0.165 3.835 6 N -0.519 5.519 7 C 0.218 3.782 8 C -0.550 4.550 9 H 0.062 0.938 10 C 0.039 3.961 11 N -0.882 5.882 12 Si 0.951 3.049 13 H -0.267 1.267 14 H -0.293 1.293 15 H -0.277 1.277 16 C 0.546 3.454 17 O -0.589 6.589 18 C -0.113 4.113 19 C -0.019 4.019 20 C 0.055 3.945 21 C -0.264 4.264 22 S 0.161 5.839 23 C 0.018 3.982 24 N -0.501 5.501 25 C -0.196 4.196 26 C -0.085 4.085 27 C -0.104 4.104 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.189 0.811 41 H 0.231 0.769 42 H 0.146 0.854 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -3.580 -4.166 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.142 4.142 3 C -0.120 4.120 4 C -0.190 4.190 5 C 0.069 3.931 6 N -0.236 5.236 7 C 0.099 3.901 8 C -0.588 4.588 9 H 0.081 0.919 10 C -0.164 4.164 11 N -0.519 5.519 12 Si 0.777 3.223 13 H -0.191 1.191 14 H -0.220 1.220 15 H -0.202 1.202 16 C 0.340 3.660 17 O -0.474 6.474 18 C -0.153 4.153 19 C -0.059 4.059 20 C -0.076 4.076 21 C -0.403 4.403 22 S 0.413 5.587 23 C -0.280 4.280 24 N -0.216 5.216 25 C -0.216 4.216 26 C -0.086 4.086 27 C -0.161 4.161 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.206 0.794 41 H 0.247 0.753 42 H 0.163 0.837 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.650 -4.198 -4.194 6.967 hybrid contribution -0.480 0.461 1.171 1.347 sum 3.170 -3.737 -3.024 5.758 Atomic orbital electron populations 1.20743 0.88968 1.03425 1.02460 1.19977 0.97518 0.91997 1.04709 1.21006 0.92659 0.98470 0.99823 1.20904 0.95061 0.96302 1.06770 1.18253 0.83612 0.94643 0.96627 1.46100 1.03605 1.10543 1.63374 1.19653 0.92712 0.81771 0.95945 1.21559 1.44949 1.00589 0.91706 0.91932 1.25591 0.93547 0.94863 1.02379 1.69906 1.46925 1.01986 1.33117 0.85626 0.77535 0.78768 0.80341 1.19136 1.21965 1.20224 1.20701 0.90987 0.81760 0.72548 1.90250 1.70355 1.34751 1.51994 1.21754 0.90177 0.97456 1.05890 1.19784 0.87013 0.97503 1.01634 1.20285 0.97348 0.92277 0.97679 1.27117 0.97100 1.07173 1.08949 1.83573 1.04483 1.24169 1.46442 1.28992 0.95560 1.01838 1.01606 1.66087 1.04676 1.27140 1.23660 1.22207 0.94806 0.99245 1.05387 1.20015 0.92729 0.96519 0.99292 1.20791 1.00069 0.92803 1.02406 0.91188 0.90690 0.90432 0.83961 0.86218 0.93931 0.93520 0.92811 0.90855 0.86075 0.90511 0.91467 0.79420 0.75329 0.83692 0.91133 0.88999 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 9.60 71.23 0.68 -1.68 16 2 C -0.14 -4.81 5.88 -19.84 -0.12 -4.93 16 3 C -0.10 -3.64 9.69 22.25 0.22 -3.42 16 4 C -0.17 -7.28 8.97 22.39 0.20 -7.08 16 5 C 0.17 7.98 6.28 38.15 0.24 8.22 16 6 N -0.52 -25.61 2.13 -635.29 -1.35 -26.96 16 7 C 0.22 10.39 5.15 85.63 0.44 10.83 16 8 C -0.55 -27.90 8.69 25.60 0.22 -27.67 16 9 H 0.06 3.15 7.85 -2.91 -0.02 3.13 16 10 C 0.04 2.00 5.41 84.65 0.46 2.46 16 11 N -0.88 -46.23 8.03 21.45 0.17 -46.06 16 12 Si 0.95 41.70 29.56 68.60 2.03 43.73 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 14 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 16 C 0.55 26.88 6.03 87.66 0.53 27.41 16 17 O -0.59 -30.45 12.51 -3.06 -0.04 -30.49 16 18 C -0.11 -4.96 4.05 29.85 0.12 -4.84 16 19 C -0.02 -0.72 5.04 29.85 0.15 -0.56 16 20 C 0.06 1.83 6.08 41.52 0.25 2.08 16 21 C -0.26 -7.15 11.07 66.78 0.74 -6.42 16 22 S 0.16 3.25 23.22 -56.49 -1.31 1.94 16 23 C 0.02 0.41 12.23 130.66 1.60 2.01 16 24 N -0.50 -16.09 10.34 -191.55 -1.98 -18.07 16 25 C -0.20 -9.23 8.61 22.39 0.19 -9.04 16 26 C -0.08 -3.26 5.88 -19.88 -0.12 -3.38 16 27 C -0.10 -3.12 9.60 71.23 0.68 -2.43 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.51 8.08 -2.38 -0.02 1.49 16 30 H 0.08 1.60 5.94 -2.39 -0.01 1.58 16 31 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 32 H 0.12 5.06 6.21 -2.91 -0.02 5.04 16 33 H 0.04 1.88 6.86 -2.38 -0.02 1.86 16 34 H 0.05 2.21 5.72 -2.39 -0.01 2.20 16 35 H 0.26 13.52 8.32 -92.71 -0.77 12.75 16 36 H 0.07 3.19 6.83 -2.39 -0.02 3.17 16 37 H 0.12 5.85 5.51 -2.39 -0.01 5.84 16 38 H 0.08 2.95 7.90 -2.39 -0.02 2.93 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.19 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.23 3.37 8.06 -2.91 -0.02 3.34 16 42 H 0.15 7.49 4.79 -39.75 -0.19 7.30 16 43 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.09 2.15 5.94 -2.39 -0.01 2.14 16 45 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 Total: -1.00 -64.58 372.00 4.85 -59.72 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.84 Total: 34.64 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 6.49 Total: -18.45 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -3.16 Total: -91.09 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.04 Total: -30.49 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.31 Total: 1.94 kcal Total: -64.58 4.85 -59.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.018 kcal (2) G-P(sol) polarization free energy of solvation -64.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds