Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42105 * 110.54249 * 2 1 4 4 O 1.42100 * 110.54299 * 223.24888 * 2 1 3 5 5 N 1.65603 * 104.45327 * 111.62323 * 2 1 3 6 6 C 1.46493 * 119.99942 * 270.00078 * 5 2 1 7 7 C 1.53005 * 109.46976 * 83.48778 * 6 5 2 8 8 F 1.39899 * 109.47189 * 53.40004 * 7 6 5 9 9 F 1.39905 * 109.46921 * 173.39683 * 7 6 5 10 10 F 1.39894 * 109.47155 * 293.39581 * 7 6 5 11 11 C 1.46502 * 119.99768 * 89.99670 * 5 2 1 12 12 C 1.53119 * 109.52571 * 233.87037 * 11 5 2 13 13 C 1.53032 * 109.27937 * 182.37857 * 12 11 5 14 14 N 1.46846 * 109.52315 * 59.17986 * 13 12 11 15 15 C 1.46904 * 111.00094 * 174.15798 * 14 13 12 16 16 C 1.50701 * 109.46782 * 66.35909 * 15 14 13 17 17 H 1.07996 * 120.00058 * 355.42995 * 16 15 14 18 18 C 1.37883 * 119.99765 * 175.70050 * 16 15 14 19 19 N 1.31512 * 119.99801 * 359.73018 * 18 16 15 20 20 Si 1.86793 * 119.99780 * 179.72719 * 18 16 15 21 21 H 1.48504 * 109.47396 * 90.00048 * 20 18 16 22 22 H 1.48499 * 109.47181 * 210.00054 * 20 18 16 23 23 H 1.48506 * 109.47676 * 329.99991 * 20 18 16 24 24 C 1.46843 * 111.19926 * 298.25870 * 14 13 12 25 25 C 1.53031 * 109.52609 * 61.73806 * 24 14 13 26 26 H 1.09001 * 109.47160 * 316.74500 * 1 2 3 27 27 H 1.08993 * 109.47446 * 76.74758 * 1 2 3 28 28 H 1.09004 * 109.47368 * 196.75609 * 1 2 3 29 29 H 1.09003 * 109.46770 * 203.48399 * 6 5 2 30 30 H 1.08992 * 109.47263 * 323.48575 * 6 5 2 31 31 H 1.09001 * 109.52195 * 354.00039 * 11 5 2 32 32 H 1.09003 * 109.50157 * 62.43282 * 12 11 5 33 33 H 1.09000 * 109.49916 * 302.32231 * 12 11 5 34 34 H 1.09000 * 109.46432 * 299.16350 * 13 12 11 35 35 H 1.08998 * 109.45467 * 179.18894 * 13 12 11 36 36 H 1.08999 * 109.47118 * 306.36310 * 15 14 13 37 37 H 1.08998 * 109.47155 * 186.35998 * 15 14 13 38 38 H 0.96997 * 119.99903 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.46315 * 181.75800 * 24 14 13 40 40 H 1.09003 * 109.45956 * 301.72416 * 24 14 13 41 41 H 1.09004 * 109.50627 * 180.87997 * 25 24 14 42 42 H 1.09002 * 109.50300 * 60.76407 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 2.4101 0.3271 2.6176 7 6 1.0505 0.6414 3.2451 8 9 0.3961 -0.5535 3.5629 9 9 1.2371 1.3948 4.4091 10 9 0.2752 1.3705 2.3370 11 6 2.4100 -2.0318 1.6826 12 6 1.5291 -2.5098 2.8402 13 6 1.7686 -4.0030 3.0743 14 7 3.1852 -4.2296 3.3877 15 6 3.4256 -5.6318 3.7540 16 6 3.1852 -6.5125 2.5550 17 1 2.8131 -6.0839 1.6362 18 6 3.4350 -7.8662 2.6328 19 7 3.8880 -8.3880 3.7518 20 14 3.1298 -8.9591 1.1490 21 1 4.3631 -9.0310 0.3250 22 1 2.7597 -10.3226 1.6062 23 1 2.0237 -8.3925 0.3359 24 6 4.0478 -3.8220 2.2714 25 6 3.8764 -2.3234 2.0133 26 1 -0.3633 0.7485 0.7042 27 1 -0.3634 0.2356 -1.0002 28 1 -0.3634 -0.9841 0.2963 29 1 3.0557 -0.1370 3.3632 30 1 2.8690 1.2501 2.2636 31 1 2.1306 -2.5590 0.7704 32 1 0.4807 -2.3437 2.5923 33 1 1.7824 -1.9546 3.7434 34 1 1.5021 -4.5588 2.1753 35 1 1.1534 -4.3431 3.9073 36 1 2.7472 -5.9188 4.5575 37 1 4.4561 -5.7481 4.0896 38 1 4.0641 -9.3403 3.8064 39 1 5.0880 -4.0308 2.5212 40 1 3.7706 -4.3787 1.3762 41 1 4.5051 -2.0242 1.1746 42 1 4.1665 -1.7653 2.9035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071903179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -203.580939 kcal Electronic energy + Delta-G solvation = -30934.185510 eV Core-core repulsion = 26241.169210 eV Total energy + Delta-G solvation = -4693.016301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.117 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.45425 -48.02829 -47.87617 -39.03955 -37.42925 -36.38440 -36.12250 -33.06547 -31.49926 -30.40738 -29.77195 -28.93636 -26.38062 -24.16979 -23.48262 -22.66142 -21.25293 -19.52317 -19.28613 -18.92428 -18.65459 -18.17980 -17.57008 -16.65208 -16.44804 -16.22073 -15.37495 -15.06367 -14.81432 -14.70913 -14.55336 -14.34283 -14.28215 -14.03749 -13.86932 -13.80538 -13.54689 -13.28457 -13.06127 -13.02389 -12.88543 -12.54139 -12.31901 -12.24428 -12.17100 -11.85329 -11.75396 -11.35469 -11.13378 -10.98743 -10.81143 -10.64508 -10.54679 -10.38545 -10.12537 -9.82254 -9.57150 -9.30042 -8.45788 -7.22574 -6.05487 -4.14868 -0.07520 2.08573 2.47189 3.25947 3.33195 3.35701 3.41561 3.56673 3.66547 3.77446 3.90495 4.31459 4.38510 4.56554 4.70981 4.81703 4.97470 5.01318 5.09184 5.25059 5.29104 5.32407 5.49206 5.66133 5.68179 5.91787 6.05769 6.18254 6.25621 6.29397 6.43505 6.60737 6.69138 6.80362 7.25176 7.49556 7.86807 8.00608 8.25389 8.26059 8.95512 9.52471 10.99498 Molecular weight = 344.12amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003621 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.994250 B = 7730.126469 C = 8558.869859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.688 4.688 2 S 2.599 3.401 3 O -0.952 6.952 4 O -0.942 6.942 5 N -0.988 5.988 6 C 0.078 3.922 7 C 0.423 3.577 8 F -0.165 7.165 9 F -0.177 7.177 10 F -0.189 7.189 11 C 0.142 3.858 12 C -0.130 4.130 13 C 0.062 3.938 14 N -0.542 5.542 15 C 0.187 3.813 16 C -0.551 4.551 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.066 3.934 25 C -0.121 4.121 26 H 0.143 0.857 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 20.200 -2.987 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.838 4.838 2 S 2.694 3.306 3 O -0.943 6.943 4 O -0.932 6.932 5 N -0.821 5.821 6 C -0.051 4.051 7 C 0.366 3.634 8 F -0.146 7.146 9 F -0.158 7.158 10 F -0.171 7.171 11 C 0.038 3.962 12 C -0.170 4.170 13 C -0.067 4.067 14 N -0.266 5.266 15 C 0.062 3.938 16 C -0.590 4.590 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.064 4.064 25 C -0.161 4.161 26 H 0.161 0.839 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.970 20.585 -3.178 21.667 hybrid contribution -1.363 -1.408 -1.056 2.226 sum -7.334 19.176 -4.234 20.963 Atomic orbital electron populations 1.30884 1.27873 1.12817 1.12252 1.05296 0.78024 0.74132 0.73196 1.93594 1.77763 1.37505 1.85404 1.93653 1.77444 1.61276 1.60828 1.57812 1.83906 1.14962 1.25461 1.22507 0.91498 0.98268 0.92858 1.21631 0.89963 0.74628 0.77164 1.93287 1.83683 1.44624 1.93013 1.93208 1.95325 1.76996 1.50307 1.93026 1.78408 1.78882 1.66784 1.21327 0.97769 0.76317 1.00767 1.22486 0.98464 0.97975 0.98034 1.21880 0.91542 0.92826 1.00481 1.62485 1.03379 1.24925 1.35816 1.19737 0.97664 0.80862 0.95534 1.21751 1.44890 0.93284 0.99050 0.92461 1.24953 0.94862 0.98146 0.95744 1.69938 1.44731 1.12645 1.25580 0.86663 0.78618 0.80038 0.83099 1.20592 1.21185 1.19968 1.21819 0.98273 0.91864 0.94423 1.21987 0.94188 0.98487 1.01408 0.83904 0.85253 0.84977 0.84314 0.84735 0.87851 0.91372 0.90317 0.94369 0.91228 0.95427 0.94717 0.92799 0.91055 0.93836 0.91542 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.69 -5.22 10.59 101.05 1.07 -4.15 16 2 S 2.60 27.52 5.60 -107.50 -0.60 26.91 16 3 O -0.95 -11.76 16.65 -57.54 -0.96 -12.72 16 4 O -0.94 -13.25 16.65 -57.54 -0.96 -14.21 16 5 N -0.99 -10.06 2.56 -107.17 -0.27 -10.33 16 6 C 0.08 0.64 4.91 -4.04 -0.02 0.62 16 7 C 0.42 3.77 3.31 37.16 0.12 3.90 16 8 F -0.16 -1.66 12.14 2.25 0.03 -1.63 16 9 F -0.18 -1.65 17.32 2.25 0.04 -1.61 16 10 F -0.19 -1.69 13.38 2.25 0.03 -1.66 16 11 C 0.14 1.78 2.43 -67.81 -0.16 1.61 16 12 C -0.13 -1.69 3.71 -26.65 -0.10 -1.79 16 13 C 0.06 1.08 5.14 -3.84 -0.02 1.06 16 14 N -0.54 -10.64 4.86 -236.12 -1.15 -11.78 16 15 C 0.19 4.60 5.13 -4.97 -0.03 4.57 16 16 C -0.55 -14.54 7.72 -34.44 -0.27 -14.81 16 17 H 0.06 1.50 5.86 -52.49 -0.31 1.19 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 20 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.07 1.18 5.00 -3.84 -0.02 1.16 16 25 C -0.12 -1.66 5.48 -26.65 -0.15 -1.81 16 26 H 0.14 1.04 5.01 -51.92 -0.26 0.78 16 27 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.13 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.14 0.99 6.46 -51.93 -0.34 0.65 16 30 H 0.13 0.94 7.08 -51.93 -0.37 0.58 16 31 H 0.10 1.37 7.01 -51.93 -0.36 1.01 16 32 H 0.07 0.78 6.89 -51.93 -0.36 0.42 16 33 H 0.08 0.98 5.90 -51.93 -0.31 0.67 16 34 H 0.04 0.72 6.96 -51.93 -0.36 0.36 16 35 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 36 H 0.03 0.72 8.06 -51.93 -0.42 0.31 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 40 H 0.04 0.86 6.64 -51.93 -0.34 0.52 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.86 6.90 -51.93 -0.36 0.50 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -31.87 342.00 -8.09 -39.95 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.45 Total: -1.28 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 0.33 Total: -7.93 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.69 Total: -47.02 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.92 Total: -26.93 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.10 Total: -4.89 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 27.52 SS G_CDS: -0.60 Total: 26.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.87 -8.09 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071903179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.628 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds