Wall clock time and date at job start Tue Mar 31 2020 04:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00512 * 2 1 4 4 C 1.50703 * 109.46834 * 270.00573 * 3 2 1 5 5 H 1.07997 * 120.00507 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99569 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99856 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00299 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47042 * 90.00017 * 8 6 4 10 10 H 1.48500 * 109.47304 * 209.99749 * 8 6 4 11 11 H 1.48494 * 109.47053 * 330.00318 * 8 6 4 12 12 C 1.34776 * 119.99675 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99982 * 179.97438 * 12 2 1 14 14 C 1.50695 * 120.00399 * 359.97438 * 12 2 1 15 15 S 1.81397 * 109.47536 * 180.02562 * 14 12 2 16 16 C 1.76198 * 103.00330 * 179.97438 * 15 14 12 17 17 N 1.32474 * 119.71342 * 0.02562 * 16 15 14 18 18 C 1.31943 * 121.62416 * 180.02562 * 17 16 15 19 19 C 1.38066 * 120.87872 * 359.97438 * 18 17 16 20 20 C 1.38868 * 119.34174 * 0.28047 * 19 18 17 21 21 C 1.38379 * 118.50636 * 359.45906 * 20 19 18 22 22 Br 1.89102 * 120.45938 * 180.26557 * 21 20 19 23 23 H 1.09007 * 109.46913 * 270.00378 * 1 2 3 24 24 H 1.09002 * 109.46698 * 29.99492 * 1 2 3 25 25 H 1.08994 * 109.47795 * 150.00343 * 1 2 3 26 26 H 1.09003 * 109.46997 * 29.99806 * 3 2 1 27 27 H 1.08994 * 109.47309 * 150.00172 * 3 2 1 28 28 H 0.96996 * 120.00115 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46704 * 60.00086 * 14 12 2 30 30 H 1.09002 * 109.47032 * 300.00292 * 14 12 2 31 31 H 1.08005 * 119.56224 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.32462 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.74243 * 179.71671 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0958 -2.2418 6 6 3.1261 2.8779 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7320 3.9298 -0.2530 9 1 5.1053 3.5090 0.1239 10 1 3.7470 5.3564 -0.6650 11 1 2.8254 3.7601 0.9108 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 16 2.5640 -3.8511 -0.0005 16 6 1.5167 -5.2680 0.0002 17 7 0.2011 -5.1121 0.0001 18 6 -0.6181 -6.1464 0.0012 19 6 -0.1292 -7.4376 0.0019 20 6 1.2438 -7.6453 0.0075 21 6 2.0788 -6.5418 0.0006 22 35 3.9571 -6.7609 0.0001 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3634 -0.8899 -0.5137 26 1 1.6085 2.0284 0.5138 27 1 3.1500 1.1383 0.5138 28 1 3.8225 4.0832 -3.0900 29 1 0.7583 -2.5298 -0.8903 30 1 0.7590 -2.5302 0.8897 31 1 -1.6854 -5.9808 0.0006 32 1 -0.8079 -8.2777 0.0032 33 1 1.6509 -8.6457 0.0128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:24 Heat of formation + Delta-G solvation = 11.337014 kcal Electronic energy + Delta-G solvation = -18784.958751 eV Core-core repulsion = 15597.734023 eV Total energy + Delta-G solvation = -3187.224729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 343.994 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28297 -39.08286 -35.03330 -33.49499 -32.61627 -32.29536 -30.30214 -29.74021 -27.89770 -25.87628 -24.25431 -23.54117 -22.34354 -19.03253 -18.09459 -16.99383 -16.90526 -16.51480 -16.27338 -15.45263 -15.34883 -14.84808 -14.66584 -14.03721 -13.76711 -13.45921 -13.11603 -12.85373 -12.41689 -12.19609 -12.12513 -12.04514 -11.60226 -11.52762 -10.98864 -10.91155 -10.54982 -10.42858 -10.27485 -10.16126 -9.77359 -9.57662 -9.51591 -9.23445 -8.60075 -7.82510 -7.64709 -6.09783 -4.09254 0.49113 0.75397 1.20863 1.30840 2.17458 3.16352 3.23287 3.28925 3.34759 3.36854 3.77208 4.23398 4.34934 4.38644 4.58091 4.72587 4.88078 4.99008 5.16214 5.23580 5.40656 5.41607 5.60318 5.61750 5.80520 6.06215 6.12304 6.62247 6.88819 7.22754 7.33584 7.57736 8.08861 8.43473 8.78000 8.93677 9.49649 11.03513 Molecular weight = 343.99amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.002961 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.922413 B = 9455.160080 C =10423.590992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.590 5.590 3 C 0.216 3.784 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.523 3.477 13 O -0.525 6.525 14 C -0.144 4.144 15 S 0.048 5.952 16 C 0.129 3.871 17 N -0.486 5.486 18 C 0.131 3.869 19 C -0.186 4.186 20 C -0.028 4.028 21 C -0.137 4.137 22 Br -0.017 7.017 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.265 0.735 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.165 0.835 32 H 0.144 0.856 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 -24.696 8.180 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.322 5.322 3 C 0.096 3.904 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.307 3.693 13 O -0.402 6.402 14 C -0.296 4.296 15 S 0.292 5.708 16 C -0.121 4.121 17 N -0.200 5.200 18 C -0.030 4.030 19 C -0.211 4.211 20 C -0.057 4.057 21 C -0.227 4.227 22 Br 0.068 6.932 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.182 0.818 32 H 0.161 0.839 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.072 -23.497 8.068 25.575 hybrid contribution -1.435 -0.297 0.482 1.543 sum -7.507 -23.795 8.550 26.375 Atomic orbital electron populations 1.21735 0.80579 1.03294 1.00744 1.47737 1.06483 1.06646 1.71339 1.19728 0.92518 0.79590 0.98575 1.21313 1.37265 1.07252 0.91164 0.90696 1.24857 0.95162 0.97327 0.95619 1.69897 1.41305 1.23562 1.18667 0.86844 0.80195 0.79761 0.82860 1.19816 1.21027 1.19052 1.19416 0.87730 0.84100 0.78069 1.90724 1.13240 1.86529 1.49718 1.23849 1.02341 0.95278 1.08140 1.86749 1.05012 0.90997 1.88036 1.23756 0.94541 0.97177 0.96641 1.68338 1.01762 1.34570 1.15345 1.22920 1.00039 0.88208 0.91840 1.22071 0.95323 0.98992 1.04677 1.21493 0.93155 0.98071 0.92960 1.22326 0.92715 0.95170 1.12500 1.96784 1.01852 1.97128 1.97415 0.93344 0.90226 0.91968 0.94925 0.94344 0.92504 0.86413 0.86684 0.81833 0.83867 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.24 59.85 0.61 1.83 16 2 N -0.59 -12.13 2.86 -182.96 -0.52 -12.65 16 3 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 4 C -0.53 -15.30 9.94 -34.44 -0.34 -15.65 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 8 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 12 C 0.52 10.75 7.69 -10.99 -0.08 10.67 16 13 O -0.53 -12.98 15.44 5.55 0.09 -12.89 16 14 C -0.14 -2.25 4.24 36.00 0.15 -2.10 16 15 S 0.05 0.76 19.74 -107.50 -2.12 -1.36 16 16 C 0.13 1.71 7.00 -16.91 -0.12 1.59 16 17 N -0.49 -5.87 9.43 -12.09 -0.11 -5.99 16 18 C 0.13 1.13 11.17 -17.57 -0.20 0.93 16 19 C -0.19 -1.31 10.10 -39.41 -0.40 -1.71 16 20 C -0.03 -0.24 9.93 -39.30 -0.39 -0.63 16 21 C -0.14 -1.58 6.26 -39.16 -0.25 -1.82 16 22 Br -0.02 -0.20 32.43 -68.01 -2.21 -2.40 16 23 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 24 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 26 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 27 H 0.04 1.00 6.85 -51.93 -0.36 0.64 16 28 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.12 1.71 7.40 -51.92 -0.38 1.32 16 30 H 0.11 1.54 8.11 -51.92 -0.42 1.11 16 31 H 0.16 0.88 8.06 -52.48 -0.42 0.45 16 32 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -34.86 321.04 -8.63 -43.49 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -3.57 Total: -3.40 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.13 Total: 0.41 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.14 Total: -45.57 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.12 Total: -1.36 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.21 Total: -2.40 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.86 -8.63 -43.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.832 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds