Wall clock time and date at job start Tue Mar 31 2020 04:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38815 * 119.99370 * 2 1 4 4 C 1.38565 * 118.03920 * 179.70267 * 3 2 1 5 5 C 1.39487 * 117.90002 * 0.57069 * 4 3 2 6 6 N 1.39047 * 120.15242 * 179.71045 * 5 4 3 7 7 C 1.46847 * 111.00292 * 303.67939 * 6 5 4 8 8 C 1.53042 * 109.51953 * 185.84030 * 7 6 5 9 9 C 1.53118 * 109.28041 * 300.82048 * 8 7 6 10 10 C 1.53123 * 109.16087 * 57.65734 * 9 8 7 11 11 H 1.08999 * 109.50135 * 62.32116 * 10 9 8 12 12 N 1.46895 * 109.50414 * 182.40258 * 10 9 8 13 13 C 1.46901 * 111.00354 * 303.87598 * 12 10 9 14 14 C 1.46897 * 110.99914 * 179.97438 * 12 10 9 15 15 C 1.53000 * 109.47487 * 202.95573 * 14 12 10 16 16 H 1.09005 * 109.47187 * 52.47010 * 15 14 12 17 17 C 1.47206 * 109.46984 * 292.47539 * 15 14 12 18 18 N 9.84423 * 134.56772 * 306.78378 * 3 1 2 19 19 C 1.52997 * 109.47722 * 172.47655 * 15 14 12 20 20 C 1.50695 * 109.47179 * 185.00194 * 19 15 14 21 21 H 1.07992 * 120.00444 * 359.97438 * 20 19 15 22 22 C 1.37883 * 119.99915 * 180.02562 * 20 19 15 23 23 N 1.31514 * 119.99680 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46922 * 179.97438 * 24 22 20 26 26 H 1.48495 * 109.47249 * 299.99717 * 24 22 20 27 27 H 1.48500 * 109.46820 * 59.99951 * 24 22 20 28 28 C 1.46854 * 110.99397 * 67.93555 * 6 5 4 29 29 N 1.32484 * 119.68565 * 359.44136 * 5 4 3 30 30 N 1.28351 * 122.07224 * 0.27545 * 29 5 4 31 31 H 1.09000 * 109.47210 * 269.97772 * 1 2 3 32 32 H 1.09006 * 109.46976 * 29.97662 * 1 2 3 33 33 H 1.09001 * 109.47380 * 149.97315 * 1 2 3 34 34 H 1.07994 * 120.98145 * 0.02562 * 3 2 1 35 35 H 1.07995 * 121.05162 * 180.28872 * 4 3 2 36 36 H 1.08998 * 109.45899 * 65.82735 * 7 6 5 37 37 H 1.09000 * 109.46467 * 305.85705 * 7 6 5 38 38 H 1.09005 * 109.50107 * 180.88209 * 8 7 6 39 39 H 1.08994 * 109.50417 * 60.76598 * 8 7 6 40 40 H 1.09001 * 109.52594 * 297.75165 * 9 8 7 41 41 H 1.08995 * 109.52144 * 177.56110 * 9 8 7 42 42 H 1.08999 * 109.46745 * 298.84634 * 13 12 10 43 43 H 1.09005 * 109.46604 * 58.84526 * 13 12 10 44 44 H 1.08995 * 109.47268 * 178.84683 * 13 12 10 45 45 H 1.08997 * 109.47349 * 82.95674 * 14 12 10 46 46 H 1.08997 * 109.47373 * 322.95441 * 14 12 10 47 47 H 1.08997 * 109.47147 * 64.99500 * 19 15 14 48 48 H 1.09001 * 109.46869 * 304.99722 * 19 15 14 49 49 H 0.97008 * 120.00084 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.49483 * 54.15892 * 28 6 5 51 51 H 1.08996 * 109.42706 * 294.18736 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2022 0.0000 4 6 3.5857 1.1550 0.0063 5 6 4.1961 -0.0992 0.0001 6 7 5.5828 -0.2012 -0.0001 7 6 6.1638 0.5242 -1.1370 8 6 7.6721 0.2706 -1.1885 9 6 8.3092 0.7425 0.1214 10 6 7.6528 0.0069 1.2931 11 1 7.8386 -1.0632 1.2009 12 7 8.2183 0.4957 2.5577 13 6 9.6799 0.3490 2.5725 14 6 7.6099 -0.1892 3.7060 15 6 7.7588 0.6802 4.9561 16 1 7.3774 1.6805 4.7505 17 6 9.1804 0.7643 5.3288 18 7 10.2768 0.8285 5.6169 19 6 6.9657 0.0586 6.1073 20 6 7.0111 0.9763 7.3017 21 1 7.5518 1.9094 7.2456 22 6 6.3630 0.6241 8.4667 23 7 5.7049 -0.5124 8.5352 24 14 6.4198 1.7613 9.9476 25 1 5.6500 1.1579 11.0648 26 1 7.8307 1.9575 10.3672 27 1 5.8235 3.0728 9.5876 28 6 6.1449 0.2673 1.2732 29 7 3.4482 -1.1928 -0.0004 30 7 2.1657 -1.1415 -0.0004 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6769 2.1466 0.0004 35 1 4.1740 2.0607 0.0113 36 1 5.9788 1.5920 -1.0192 37 1 5.7051 0.1763 -2.0625 38 1 8.1055 0.8218 -2.0232 39 1 7.8576 -0.7953 -1.3201 40 1 8.1575 1.8160 0.2344 41 1 9.3770 0.5242 0.1065 42 1 9.9402 -0.7051 2.4771 43 1 10.1093 0.9062 1.7398 44 1 10.0745 0.7372 3.5114 45 1 8.1100 -1.1444 3.8661 46 1 6.5521 -0.3618 3.5074 47 1 7.4032 -0.9041 6.3718 48 1 5.9302 -0.0854 5.7989 49 1 5.2492 -0.7604 9.3549 50 1 5.6731 -0.2672 2.0977 51 1 5.9595 1.3361 1.3799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072253905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:08 Heat of formation + Delta-G solvation = 103.518375 kcal Electronic energy + Delta-G solvation = -30068.378700 eV Core-core repulsion = 26196.769617 eV Total energy + Delta-G solvation = -3871.609084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.207 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.52702 -39.75610 -37.82087 -35.86001 -34.32017 -33.88663 -33.48943 -31.87218 -31.50900 -29.98769 -28.24477 -27.36378 -25.68047 -24.71268 -24.04358 -23.57654 -22.45589 -21.73733 -21.23441 -19.74989 -17.85034 -17.69466 -16.83530 -16.43670 -16.10723 -15.88136 -15.38359 -15.07316 -14.99527 -14.79133 -14.48826 -14.32250 -14.02949 -13.65391 -13.44234 -13.41644 -13.28626 -13.01102 -12.81663 -12.66643 -12.61782 -12.42415 -12.11033 -11.97107 -11.70432 -11.54057 -11.35945 -11.11474 -11.00889 -10.92630 -10.84293 -10.73860 -10.49959 -10.42982 -10.34636 -10.24736 -10.08847 -9.71504 -9.50725 -9.25097 -8.71608 -8.45603 -8.26046 -6.09544 -4.13124 0.53858 0.59592 2.94710 3.23251 3.30283 3.34880 3.38140 3.57300 3.64314 3.90192 4.00783 4.21435 4.30678 4.40513 4.45119 4.52166 4.65378 4.68327 4.69370 4.79417 4.92587 5.06940 5.11074 5.21862 5.24296 5.28137 5.29029 5.33525 5.40762 5.42422 5.52451 5.54533 5.58737 5.61615 5.68534 5.73646 5.80083 5.82166 5.87029 5.93544 6.08141 6.11770 6.16716 6.34303 6.52622 6.57643 6.78366 7.11385 7.14397 7.42347 7.52955 7.84942 8.22639 8.39909 8.58535 8.91218 9.52270 11.01208 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.003145 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.994298 B = 8900.935590 C =11583.156436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.061 3.939 3 C -0.108 4.108 4 C -0.143 4.143 5 C 0.249 3.751 6 N -0.491 5.491 7 C 0.063 3.937 8 C -0.114 4.114 9 C -0.117 4.117 10 C 0.090 3.910 11 H 0.054 0.946 12 N -0.537 5.537 13 C 0.007 3.993 14 C 0.055 3.945 15 C 0.011 3.989 16 H 0.109 0.891 17 C 0.254 3.746 18 N -0.482 5.482 19 C 0.032 3.968 20 C -0.528 4.528 21 H 0.056 0.944 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.286 1.286 26 H -0.277 1.277 27 H -0.275 1.275 28 C 0.069 3.931 29 N -0.216 5.216 30 N -0.232 5.232 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.092 0.908 47 H 0.024 0.976 48 H 0.038 0.962 49 H 0.263 0.737 50 H 0.087 0.913 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 4.432 -24.100 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.175 4.175 5 C 0.012 3.988 6 N -0.215 5.215 7 C -0.064 4.064 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.019 4.019 11 H 0.072 0.928 12 N -0.261 5.261 13 C -0.141 4.141 14 C -0.074 4.074 15 C -0.011 4.011 16 H 0.127 0.873 17 C -0.062 4.062 18 N -0.159 5.159 19 C -0.006 4.006 20 C -0.566 4.566 21 H 0.074 0.926 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.719 3.281 25 H -0.212 1.212 26 H -0.202 1.202 27 H -0.201 1.201 28 C -0.058 4.058 29 N -0.058 5.058 30 N -0.075 5.075 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.110 0.890 47 H 0.043 0.957 48 H 0.056 0.944 49 H 0.073 0.927 50 H 0.105 0.895 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.827 2.740 -23.551 24.197 hybrid contribution -0.331 2.152 0.959 2.379 sum -5.158 4.891 -22.592 23.684 Atomic orbital electron populations 1.20688 0.87346 1.03964 1.03893 1.22981 0.99267 0.90618 0.95502 1.22248 0.94214 0.99930 0.97296 1.22993 0.96130 1.00199 0.98139 1.21198 0.91670 0.89752 0.96144 1.58526 0.99891 1.58635 1.04477 1.22198 0.95970 0.95763 0.92458 1.21573 0.93226 1.02693 0.97697 1.21730 0.99914 1.00757 0.93108 1.21536 0.92657 0.98016 0.89683 0.92776 1.62056 1.05102 1.57368 1.01603 1.22796 0.87635 0.99731 1.03964 1.22386 1.00681 0.95304 0.88982 1.19313 0.83508 1.02458 0.95864 0.87326 1.29120 0.94683 0.91906 0.90449 1.81011 1.13790 1.10104 1.11024 1.19160 0.94911 0.96385 0.90160 1.21095 1.33050 1.05331 0.97086 0.92562 1.24951 0.95075 0.95173 0.98697 1.69933 1.33426 1.21806 1.27753 0.86662 0.78246 0.80991 0.82237 1.21167 1.20238 1.20052 1.22273 0.94884 0.99474 0.89147 1.73040 0.98778 1.26256 1.07757 1.73076 1.00757 1.24499 1.09197 0.89582 0.90329 0.89881 0.83289 0.83430 0.93898 0.90533 0.90731 0.90670 0.90983 0.91182 0.95644 0.91325 0.89957 0.93666 0.88957 0.95721 0.94408 0.92721 0.89459 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.19 36.00 0.37 -0.25 16 2 C 0.06 0.59 6.87 -82.40 -0.57 0.03 16 3 C -0.11 -0.86 9.86 -39.25 -0.39 -1.25 16 4 C -0.14 -1.30 8.85 -39.00 -0.35 -1.64 16 5 C 0.25 2.94 5.77 -154.77 -0.89 2.04 16 6 N -0.49 -5.40 4.70 -173.07 -0.81 -6.22 16 7 C 0.06 0.53 5.06 -3.83 -0.02 0.51 16 8 C -0.11 -0.86 6.09 -26.65 -0.16 -1.03 16 9 C -0.12 -1.05 4.84 -26.61 -0.13 -1.18 16 10 C 0.09 1.01 2.10 -67.63 -0.14 0.86 16 11 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 12 N -0.54 -7.06 4.54 -234.79 -1.07 -8.12 16 13 C 0.01 0.09 8.71 60.06 0.52 0.62 16 14 C 0.05 0.83 4.52 -3.83 -0.02 0.82 16 15 C 0.01 0.20 2.40 -93.41 -0.22 -0.03 16 16 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 17 C 0.25 5.15 11.21 -20.78 -0.23 4.92 16 18 N -0.48 -10.42 17.54 42.13 0.74 -9.68 16 19 C 0.03 0.76 4.42 -27.89 -0.12 0.63 16 20 C -0.53 -14.06 8.60 -34.44 -0.30 -14.36 16 21 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 24 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 C 0.07 0.78 4.33 -3.83 -0.02 0.76 16 29 N -0.22 -3.09 11.54 31.23 0.36 -2.73 16 30 N -0.23 -3.07 11.41 33.61 0.38 -2.69 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 1.01 7.24 -52.49 -0.38 0.63 16 36 H 0.04 0.31 7.19 -51.93 -0.37 -0.06 16 37 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.61 6.48 -51.93 -0.34 0.27 16 42 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 43 H 0.07 0.78 6.23 -51.93 -0.32 0.45 16 44 H 0.08 1.30 4.14 -51.93 -0.22 1.09 16 45 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 46 H 0.09 1.33 5.50 -51.93 -0.29 1.05 16 47 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.09 1.13 6.02 -51.93 -0.31 0.82 16 51 H 0.05 0.59 7.80 -51.93 -0.41 0.18 16 LS Contribution 403.22 15.07 6.08 6.08 Total: -1.00 -32.09 403.22 -9.43 -41.52 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.07 Total: -2.67 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.76 Total: -6.89 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.34 Total: -54.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.09 -9.43 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.039 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds