Wall clock time and date at job start Tue Mar 31 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48503 * 109.47424 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47088 * 299.99877 * 3 2 1 6 6 H 1.48503 * 109.47113 * 59.99550 * 3 2 1 7 7 C 1.37878 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99658 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46751 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99844 * 269.99935 * 10 9 7 12 12 C 1.50699 * 109.46907 * 270.00519 * 11 10 9 13 13 C 1.34518 * 125.79367 * 89.71398 * 12 11 10 14 14 C 1.41380 * 106.83990 * 179.88475 * 13 12 11 15 15 C 1.34509 * 106.84224 * 0.37626 * 14 13 12 16 16 O 1.34302 * 108.42220 * 359.76603 * 15 14 13 17 17 C 1.34772 * 120.00255 * 90.00242 * 10 9 7 18 18 O 1.21282 * 120.00328 * 359.97438 * 17 10 9 19 19 C 1.50707 * 119.99868 * 179.97438 * 17 10 9 20 20 N 1.46899 * 109.46755 * 179.97438 * 19 17 10 21 21 C 1.47959 * 110.99732 * 170.00089 * 20 19 17 22 22 C 1.53937 * 86.18112 * 222.41872 * 21 20 19 23 23 N 1.46504 * 113.73322 * 138.08102 * 22 21 20 24 24 C 1.34951 * 126.03463 * 275.02516 * 23 22 21 25 25 C 1.35320 * 107.74569 * 180.02562 * 24 23 22 26 26 C 1.39866 * 107.91898 * 359.97438 * 25 24 23 27 27 N 1.30844 * 108.20609 * 0.02562 * 26 25 24 28 28 C 1.47961 * 111.00115 * 70.64460 * 20 19 17 29 29 H 0.97002 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47291 * 60.00516 * 9 7 2 31 31 H 1.08997 * 109.47353 * 300.00132 * 9 7 2 32 32 H 1.08999 * 109.47050 * 30.00036 * 11 10 9 33 33 H 1.08997 * 109.47153 * 150.00405 * 11 10 9 34 34 H 1.07997 * 126.57299 * 0.02598 * 13 12 11 35 35 H 1.07998 * 126.57749 * 180.15766 * 14 13 12 36 36 H 1.08010 * 125.79015 * 179.74622 * 15 14 13 37 37 H 1.08999 * 109.46946 * 60.00170 * 19 17 10 38 38 H 1.08995 * 109.47360 * 300.00065 * 19 17 10 39 39 H 1.09000 * 113.76173 * 108.10199 * 21 20 19 40 40 H 1.09002 * 113.76056 * 336.73868 * 21 20 19 41 41 H 1.08997 * 113.73384 * 269.25490 * 22 21 20 42 42 H 1.07996 * 126.12664 * 359.95494 * 24 23 22 43 43 H 1.07992 * 126.03988 * 180.02562 * 25 24 23 44 44 H 1.08004 * 125.89910 * 179.97438 * 26 25 24 45 45 H 1.09003 * 113.75872 * 23.25760 * 28 20 19 46 46 H 1.09005 * 113.75739 * 251.89930 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6790 -4.1694 -1.2693 12 6 1.7623 -5.2835 -1.7044 13 6 0.6666 -5.1461 -2.4726 14 6 0.1144 -6.4377 -2.6331 15 6 0.9008 -7.2859 -1.9465 16 8 1.8974 -6.5813 -1.3861 17 6 2.6410 -4.1249 1.1666 18 8 2.2473 -3.6638 2.2170 19 6 3.6199 -5.2707 1.1665 20 7 3.9386 -5.6424 2.5515 21 6 4.7042 -6.9077 2.5980 22 6 3.8036 -7.2890 3.7868 23 7 3.3511 -8.6822 3.7607 24 6 2.2768 -9.1556 3.0953 25 6 2.2023 -10.4869 3.3263 26 6 3.2679 -10.8391 4.1609 27 7 3.9572 -9.7580 4.4221 28 6 2.7825 -6.2949 3.2048 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.6867 -3.3877 -2.0289 33 1 3.6885 -4.5594 -1.1390 34 1 0.2838 -4.2260 -2.8888 35 1 -0.7712 -6.6936 -3.1958 36 1 0.7553 -8.3526 -1.8603 37 1 4.5325 -4.9688 0.6525 38 1 3.1792 -6.1251 0.6528 39 1 5.7527 -6.7770 2.8656 40 1 4.5636 -7.5386 1.7204 41 1 4.2057 -6.9910 4.7551 42 1 1.5974 -8.5757 2.4883 43 1 1.4530 -11.1587 2.9347 44 1 3.4841 -11.8318 4.5272 45 1 2.0797 -6.7466 2.5047 46 1 2.2956 -5.6745 3.9573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072267711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:09 Heat of formation + Delta-G solvation = 118.603493 kcal Electronic energy + Delta-G solvation = -30345.200383 eV Core-core repulsion = 26240.693683 eV Total energy + Delta-G solvation = -4104.506701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44497 -41.58788 -40.03788 -38.51353 -35.27785 -33.00119 -32.87536 -32.57621 -30.32423 -30.23327 -29.75858 -27.46386 -26.44210 -25.62914 -24.86468 -22.77304 -21.67092 -21.59667 -21.14491 -20.59475 -19.54210 -18.79635 -17.75661 -17.32469 -16.79525 -16.36431 -16.29037 -15.82259 -15.46683 -15.04534 -14.84553 -14.79695 -14.42705 -14.28748 -13.79652 -13.75844 -13.15362 -12.92723 -12.88511 -12.72921 -12.65744 -12.62034 -12.46041 -12.21135 -12.04849 -11.65147 -11.36919 -11.29275 -11.16052 -10.92446 -10.78268 -10.66597 -10.23709 -9.81558 -9.71844 -9.57529 -9.22653 -8.88730 -8.72543 -8.50345 -8.41342 -7.89319 -6.10584 -4.15625 1.73022 1.78391 2.26118 2.70539 2.72355 3.00963 3.26543 3.29062 3.35310 3.39692 3.53115 3.89775 3.94835 4.39605 4.49300 4.57779 4.74105 4.77949 4.83697 4.89044 5.02950 5.11064 5.15087 5.24456 5.26439 5.29954 5.37202 5.39627 5.46670 5.50753 5.66634 5.77932 5.79333 5.85847 5.90979 6.06361 6.08793 6.19177 6.49931 6.58967 6.61459 6.85503 6.94689 7.20430 7.34857 7.41204 7.56559 7.85424 8.14498 8.20704 8.81154 8.95571 9.50041 10.97623 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.003276 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.777100 B = 8545.816619 C =10275.914959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.249 3.751 10 N -0.594 5.594 11 C 0.190 3.810 12 C -0.028 4.028 13 C -0.191 4.191 14 C -0.211 4.211 15 C -0.052 4.052 16 O -0.181 6.181 17 C 0.511 3.489 18 O -0.516 6.516 19 C 0.000 4.000 20 N -0.448 5.448 21 C -0.005 4.005 22 C 0.130 3.870 23 N -0.360 5.360 24 C 0.055 3.945 25 C -0.276 4.276 26 C 0.041 3.959 27 N -0.297 5.297 28 C 0.012 3.988 29 H 0.263 0.737 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.198 0.802 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.170 0.830 43 H 0.146 0.854 44 H 0.181 0.819 45 H 0.077 0.923 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -20.177 -1.798 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.130 3.870 10 N -0.327 5.327 11 C 0.065 3.935 12 C -0.080 4.080 13 C -0.211 4.211 14 C -0.230 4.230 15 C -0.119 4.119 16 O -0.077 6.077 17 C 0.297 3.703 18 O -0.391 6.391 19 C -0.132 4.132 20 N -0.171 5.171 21 C -0.135 4.135 22 C 0.027 3.973 23 N -0.143 5.143 24 C -0.091 4.091 25 C -0.306 4.306 26 C -0.145 4.145 27 N -0.118 5.118 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.215 0.785 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.150 0.850 42 H 0.188 0.812 43 H 0.164 0.836 44 H 0.198 0.802 45 H 0.095 0.905 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.783 -18.629 -0.150 19.506 hybrid contribution -1.050 -0.118 -1.324 1.694 sum 4.733 -18.746 -1.474 19.391 Atomic orbital electron populations 1.69938 1.06017 1.27002 1.50261 1.24927 0.94862 0.99254 0.94946 0.86444 0.80053 0.83330 0.77611 1.19718 1.20970 1.20866 1.21451 0.93443 0.90489 1.51298 0.92238 1.19320 0.87278 0.81810 0.98602 1.48324 1.46329 1.34839 1.03160 1.19894 0.93837 0.90658 0.89064 1.23318 1.00805 0.82678 1.01165 1.21722 0.96838 0.98920 1.03611 1.21840 1.02779 0.93195 1.05203 1.23933 0.89988 0.97771 1.00235 1.83976 1.44901 1.18822 1.60010 1.20057 0.82185 0.83726 0.84368 1.90690 1.57257 1.60588 1.30521 1.22736 1.00539 0.98402 0.91508 1.68475 1.10476 1.24063 1.14074 1.24543 1.00672 0.90996 0.97274 1.23504 0.97191 0.75108 1.01503 1.48844 1.21085 1.07256 1.37111 1.22529 0.92302 0.95630 0.98619 1.21491 1.04655 0.94963 1.09473 1.23886 0.94357 0.97950 0.98331 1.77359 1.21693 0.93896 1.18824 1.24372 0.94037 0.93684 0.99627 0.92715 0.94841 0.93820 0.86435 0.89978 0.83161 0.83710 0.78548 0.87750 0.91134 0.87726 0.90454 0.84968 0.81246 0.83611 0.80180 0.90499 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.25 6.17 5.16 -5.19 -0.03 6.15 16 10 N -0.59 -11.76 2.44 -176.43 -0.43 -12.19 16 11 C 0.19 2.89 5.74 -5.19 -0.03 2.86 16 12 C -0.03 -0.41 6.85 -35.62 -0.24 -0.66 16 13 C -0.19 -2.77 10.81 -39.70 -0.43 -3.20 16 14 C -0.21 -2.58 10.91 -39.71 -0.43 -3.02 16 15 C -0.05 -0.57 12.09 29.41 0.36 -0.22 16 16 O -0.18 -2.39 9.54 5.71 0.05 -2.34 16 17 C 0.51 10.06 7.48 -10.98 -0.08 9.98 16 18 O -0.52 -12.35 15.13 5.56 0.08 -12.27 16 19 C 0.00 0.00 3.86 -4.97 -0.02 -0.02 16 20 N -0.45 -6.22 5.95 -239.89 -1.43 -7.64 16 21 C -0.01 -0.06 7.77 -2.77 -0.02 -0.08 16 22 C 0.13 1.47 5.23 -69.63 -0.36 1.10 16 23 N -0.36 -4.26 3.81 -56.00 -0.21 -4.48 16 24 C 0.06 0.59 10.70 -17.22 -0.18 0.40 16 25 C -0.28 -2.69 10.80 -40.01 -0.43 -3.12 16 26 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 27 N -0.30 -3.77 12.58 30.63 0.39 -3.39 16 28 C 0.01 0.16 6.11 -2.77 -0.02 0.14 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 32 H 0.12 1.75 8.07 -51.93 -0.42 1.33 16 33 H 0.08 1.02 6.44 -51.93 -0.33 0.68 16 34 H 0.15 2.19 8.06 -52.49 -0.42 1.76 16 35 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.20 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 38 H 0.07 0.92 6.47 -51.93 -0.34 0.59 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 41 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.17 1.50 6.67 -52.49 -0.35 1.15 16 43 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.18 1.25 8.06 -52.48 -0.42 0.82 16 45 H 0.08 0.95 5.94 -51.93 -0.31 0.64 16 46 H 0.11 1.63 8.09 -51.93 -0.42 1.21 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -34.31 389.03 -8.79 -43.11 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.27 Total: 4.62 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.56 Total: -2.51 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.95 Total: -52.82 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.14 Total: -14.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.31 -8.79 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072267711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.710 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds