Wall clock time and date at job start Tue Mar 31 2020 07:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.53008 * 109.47165 * 119.99362 * 2 1 3 5 5 C 1.50690 * 109.47110 * 175.00222 * 4 2 1 6 6 C 1.39672 * 126.06913 * 125.00243 * 5 4 2 7 7 C 1.38426 * 105.36176 * 179.97438 * 6 5 4 8 8 C 1.47129 * 126.88918 * 179.73412 * 7 6 5 9 9 O 1.21644 * 119.99658 * 351.07408 * 8 7 6 10 10 N 1.34772 * 119.99729 * 171.06879 * 8 7 6 11 11 C 1.46496 * 120.00402 * 0.25678 * 10 8 7 12 12 C 1.50697 * 109.47021 * 83.03167 * 11 10 8 13 13 H 1.07998 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00019 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00008 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00101 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47112 * 90.00564 * 16 14 12 18 18 H 1.48497 * 109.47501 * 210.00572 * 16 14 12 19 19 H 1.48503 * 109.47265 * 330.00581 * 16 14 12 20 20 C 1.39943 * 119.99654 * 180.25783 * 10 8 7 21 21 C 1.38872 * 120.04628 * 171.49647 * 20 10 8 22 22 C 1.38117 * 119.95234 * 179.78915 * 21 20 10 23 23 C 1.38473 * 120.04524 * 0.46627 * 22 21 20 24 24 F 1.35094 * 119.95295 * 179.76666 * 23 22 21 25 25 C 1.38484 * 120.09393 * 359.78999 * 23 22 21 26 26 C 1.38108 * 120.04791 * 359.97438 * 25 23 22 27 27 N 1.36601 * 106.22295 * 0.02562 * 7 6 5 28 28 H 0.97010 * 125.18972 * 179.97438 * 27 7 6 29 29 N 1.28442 * 109.62181 * 359.97438 * 27 7 6 30 30 H 1.09002 * 109.47264 * 299.99967 * 1 2 3 31 31 H 1.08997 * 109.47206 * 60.00857 * 1 2 3 32 32 H 1.09004 * 109.46810 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47758 * 239.99584 * 2 1 3 34 34 H 1.09006 * 109.46605 * 299.99690 * 3 2 1 35 35 H 1.08995 * 109.47149 * 59.99211 * 3 2 1 36 36 H 1.08994 * 109.47449 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.46608 * 55.00186 * 4 2 1 38 38 H 1.09000 * 109.46764 * 295.00148 * 4 2 1 39 39 H 1.08004 * 127.31940 * 359.96047 * 6 5 4 40 40 H 1.09005 * 109.47471 * 203.03282 * 11 10 8 41 41 H 1.09000 * 109.46928 * 323.03520 * 11 10 8 42 42 H 0.96997 * 120.00373 * 179.97438 * 15 14 12 43 43 H 1.08002 * 120.02711 * 0.02691 * 21 20 10 44 44 H 1.07993 * 119.97492 * 180.23752 * 22 21 20 45 45 H 1.07999 * 119.97268 * 179.97438 * 25 23 22 46 46 H 1.08004 * 120.02139 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5418 -0.8292 1.1891 6 6 4.4381 -0.3842 2.1635 7 6 5.6953 -0.6961 1.6752 8 6 6.9871 -0.4286 2.3265 9 8 7.0324 0.2627 3.3264 10 7 8.1201 -0.9496 1.8154 11 6 8.0662 -1.7775 0.6081 12 6 8.0464 -0.8897 -0.6094 13 1 8.0719 0.1839 -0.4953 14 6 7.9968 -1.4481 -1.8691 15 7 7.9662 -2.7555 -2.0081 16 14 7.9715 -0.3475 -3.3782 17 1 9.3641 -0.0831 -3.8213 18 1 7.2243 -1.0217 -4.4701 19 1 7.3063 0.9371 -3.0430 20 6 9.3482 -0.6995 2.4381 21 6 10.4888 -1.3737 2.0219 22 6 11.7007 -1.1222 2.6349 23 6 11.7770 -0.2058 3.6702 24 9 12.9625 0.0353 4.2716 25 6 10.6398 0.4636 4.0903 26 6 9.4269 0.2188 3.4768 27 7 5.4963 -1.2962 0.4642 28 1 6.1983 -1.6262 -0.1183 29 7 4.2378 -1.3568 0.2145 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6766 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 3.1299 1.4426 0.0005 37 1 1.6054 -1.7197 1.2953 38 1 1.7516 -0.1581 2.1370 39 1 4.2008 0.1005 3.0990 40 1 8.9426 -2.4246 0.5717 41 1 7.1638 -2.3887 0.6267 42 1 7.9309 -3.1483 -2.8943 43 1 10.4290 -2.0912 1.2170 44 1 12.5886 -1.6434 2.3090 45 1 10.7015 1.1777 4.8982 46 1 8.5402 0.7408 3.8051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072277522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:18 Heat of formation + Delta-G solvation = 30.967444 kcal Electronic energy + Delta-G solvation = -30327.246231 eV Core-core repulsion = 26133.593474 eV Total energy + Delta-G solvation = -4193.652757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.55174 -42.15055 -40.20200 -37.78292 -36.41238 -35.68677 -33.21666 -31.51979 -30.90618 -30.58450 -29.05510 -27.75204 -27.03319 -26.66467 -24.12687 -23.53528 -22.53181 -21.27809 -20.59414 -20.13711 -19.17472 -17.53058 -17.40084 -17.17183 -16.74807 -16.10421 -15.44343 -15.25477 -15.13083 -14.97299 -14.74043 -14.44504 -14.21495 -13.97513 -13.60397 -13.38989 -13.31701 -13.11173 -12.82402 -12.74201 -12.44142 -12.34826 -12.18534 -12.12783 -11.70521 -11.57528 -11.41385 -11.05148 -11.00568 -10.86691 -10.79403 -10.61148 -10.56084 -10.42848 -10.06689 -9.48389 -9.18792 -9.02215 -8.78295 -8.63668 -8.53823 -7.43050 -6.68726 -4.85860 1.29048 1.58864 1.95646 2.99891 3.03348 3.09196 3.10600 3.21448 3.51362 3.76569 3.96121 4.11220 4.61656 4.64770 4.71615 4.91796 4.98729 5.08552 5.14082 5.19374 5.30772 5.54814 5.58517 5.64591 5.69212 5.78332 5.79946 5.82682 5.91206 5.96466 6.03697 6.06807 6.12614 6.19950 6.27238 6.27697 6.39184 6.46029 6.53207 6.56933 6.63238 6.67112 6.90241 6.95830 7.26352 7.35700 7.43217 7.65579 7.81304 8.25423 8.40984 8.66750 8.87698 10.33576 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.003665 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.448294 B = 7637.853974 C = 9612.820632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.024 4.024 5 C 0.007 3.993 6 C -0.168 4.168 7 C -0.035 4.035 8 C 0.596 3.404 9 O -0.526 6.526 10 N -0.532 5.532 11 C 0.206 3.794 12 C -0.572 4.572 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.874 5.874 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.268 1.268 20 C 0.164 3.836 21 C -0.122 4.122 22 C -0.131 4.131 23 C 0.054 3.946 24 F -0.151 7.151 25 C -0.134 4.134 26 C -0.146 4.146 27 N -0.342 5.342 28 H 0.471 0.529 29 N -0.271 5.271 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.278 0.722 43 H 0.145 0.855 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 2.404 5.543 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.063 4.063 5 C -0.148 4.148 6 C -0.197 4.197 7 C -0.165 4.165 8 C 0.386 3.614 9 O -0.405 6.405 10 N -0.251 5.251 11 C 0.086 3.914 12 C -0.610 4.610 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.509 5.509 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.192 1.192 20 C 0.068 3.932 21 C -0.143 4.143 22 C -0.150 4.150 23 C 0.034 3.966 24 F -0.129 7.129 25 C -0.153 4.153 26 C -0.166 4.166 27 N -0.075 5.075 28 H 0.338 0.662 29 N -0.108 5.108 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.173 0.827 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.162 0.838 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.531 2.033 4.826 7.616 hybrid contribution 0.980 0.647 -0.488 1.272 sum -4.550 2.680 4.337 6.834 Atomic orbital electron populations 1.21840 0.95446 1.01512 1.01492 1.21098 0.94924 0.96571 0.98664 1.21810 1.01682 0.95692 1.00984 1.19929 0.87074 1.00845 0.98414 1.21816 0.96592 1.03772 0.92616 1.21854 0.89527 1.06472 1.01870 1.21327 0.94991 1.08595 0.91577 1.17167 0.82268 0.79095 0.82824 1.90399 1.85367 1.39032 1.25667 1.45784 1.04077 1.47899 1.27321 1.20107 1.00100 0.90996 0.80148 1.21518 1.55234 0.94402 0.89861 0.90781 1.25063 0.93318 0.95543 0.99616 1.69891 1.45960 1.09647 1.25438 0.86332 0.78940 0.80588 0.81150 1.19705 1.20294 1.19207 1.18000 0.85478 0.95793 0.93888 1.20921 0.90559 1.01205 1.01574 1.20837 0.98620 0.99128 0.96455 1.17719 0.81172 1.01074 0.96589 1.91433 1.45069 1.93750 1.82689 1.21073 0.91427 1.01071 1.01739 1.22549 1.00042 0.98131 0.95841 1.46101 1.06403 1.39867 1.15153 0.66225 1.73042 0.91532 1.20624 1.25556 0.92821 0.92894 0.92768 0.90435 0.93253 0.92928 0.92425 0.90840 0.90480 0.82718 0.91679 0.94011 0.91220 0.83766 0.84920 0.85093 0.79692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 2 C -0.09 -1.14 2.90 -90.62 -0.26 -1.40 16 3 C -0.14 -1.80 9.01 37.16 0.33 -1.47 16 4 C -0.02 -0.30 5.27 -27.88 -0.15 -0.45 16 5 C 0.01 0.12 5.47 -82.48 -0.45 -0.33 16 6 C -0.17 -2.91 10.78 -38.98 -0.42 -3.33 16 7 C -0.03 -0.69 6.70 -82.07 -0.55 -1.24 16 8 C 0.60 12.15 7.54 -12.65 -0.10 12.05 16 9 O -0.53 -10.75 13.36 5.24 0.07 -10.68 16 10 N -0.53 -10.78 2.70 -116.03 -0.31 -11.09 16 11 C 0.21 4.42 4.48 -5.20 -0.02 4.40 16 12 C -0.57 -13.29 7.31 -34.44 -0.25 -13.54 16 13 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 14 C 0.07 1.70 5.08 -17.82 -0.09 1.61 16 15 N -0.87 -21.09 13.29 55.43 0.74 -20.35 16 16 Si 0.90 19.08 29.54 -169.99 -5.02 14.06 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 C 0.16 3.12 6.48 -83.69 -0.54 2.58 16 21 C -0.12 -2.12 9.29 -39.39 -0.37 -2.49 16 22 C -0.13 -2.04 10.02 -39.54 -0.40 -2.44 16 23 C 0.05 0.87 7.30 -39.40 -0.29 0.58 16 24 F -0.15 -2.33 17.26 2.25 0.04 -2.29 16 25 C -0.13 -2.11 10.02 -39.54 -0.40 -2.50 16 26 C -0.15 -2.60 9.01 -39.40 -0.35 -2.96 16 27 N -0.34 -7.09 5.71 33.47 0.19 -6.90 16 28 H 0.47 10.38 3.35 -190.45 -0.64 9.74 16 29 N -0.27 -5.29 12.07 33.63 0.41 -4.88 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.86 7.38 -51.93 -0.38 0.48 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.16 2.34 8.06 -52.48 -0.42 1.91 16 40 H 0.07 1.40 5.64 -51.93 -0.29 1.11 16 41 H 0.04 0.94 5.21 -51.93 -0.27 0.66 16 42 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 43 H 0.14 2.50 5.88 -52.49 -0.31 2.19 16 44 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.19 3.45 4.61 -55.85 -0.26 3.19 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -24.63 378.52 -8.49 -33.12 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -6.34 Total: 15.28 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -3.96 Total: -11.97 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 1.02 Total: -43.21 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -24.63 -8.49 -33.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072277522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.089 kcal (2) G-P(sol) polarization free energy of solvation -24.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds