Wall clock time and date at job start Tue Mar 31 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35947 * 117.00525 * 2 1 4 4 C 1.38083 * 119.99706 * 359.97438 * 3 2 1 5 5 C 1.39979 * 119.84075 * 179.97438 * 4 3 2 6 6 C 1.46965 * 120.08043 * 180.02562 * 5 4 3 7 7 C 1.35021 * 119.99900 * 179.97438 * 6 5 4 8 8 C 1.46239 * 120.00112 * 180.02562 * 7 6 5 9 9 O 1.21759 * 119.99852 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00200 * 180.02562 * 8 7 6 11 11 C 1.40636 * 119.99820 * 184.45514 * 10 8 7 12 12 C 1.38808 * 122.63034 * 326.11604 * 11 10 8 13 13 C 1.33366 * 114.89200 * 180.02562 * 12 11 10 14 14 S 1.75846 * 109.71875 * 359.97438 * 13 12 11 15 15 C 1.33850 * 122.62187 * 145.82554 * 11 10 8 16 16 C 1.40030 * 119.84085 * 0.02562 * 5 4 3 17 17 C 1.37655 * 120.00237 * 359.97438 * 16 5 4 18 18 C 1.39058 * 120.15775 * 0.26331 * 17 16 5 19 19 O 1.35615 * 119.92257 * 179.72339 * 18 17 16 20 20 C 1.34770 * 116.99392 * 354.21769 * 19 18 17 21 21 H 1.07994 * 120.00491 * 5.08381 * 20 19 18 22 22 C 1.38709 * 119.99445 * 185.08102 * 20 19 18 23 23 N 1.31515 * 119.99365 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00117 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47349 * 90.00188 * 24 22 20 26 26 H 1.48499 * 109.46934 * 209.99889 * 24 22 20 27 27 H 1.48503 * 109.47121 * 329.99705 * 24 22 20 28 28 H 1.09000 * 109.47031 * 60.00108 * 1 2 3 29 29 H 1.08997 * 109.47383 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47229 * 300.00377 * 1 2 3 31 31 H 1.07998 * 120.07962 * 359.96243 * 4 3 2 32 32 H 1.07997 * 119.99991 * 359.97438 * 6 5 4 33 33 H 1.08007 * 120.00073 * 0.02562 * 7 6 5 34 34 H 0.96997 * 119.99936 * 4.45508 * 10 8 7 35 35 H 1.07995 * 122.55542 * 359.97438 * 12 11 10 36 36 H 1.08000 * 125.13654 * 180.02562 * 13 12 11 37 37 H 1.07997 * 125.20774 * 359.97438 * 15 11 10 38 38 H 1.07999 * 120.00144 * 180.02562 * 16 5 4 39 39 H 1.07996 * 119.92407 * 179.97438 * 17 16 5 40 40 H 0.97012 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2942 2.3693 -0.0005 5 6 1.9332 3.6148 0.0000 6 6 1.1380 4.8507 0.0000 7 6 1.7561 6.0511 0.0011 8 6 0.9648 7.2810 0.0016 9 8 -0.2513 7.2224 0.0007 10 7 1.5818 8.4792 0.0022 11 6 0.8240 9.6602 0.0973 12 6 -0.4391 9.7863 -0.4643 13 6 -1.0188 10.9734 -0.2813 14 16 0.0497 12.0190 0.6445 15 6 1.2621 10.7486 0.7414 16 6 3.3320 3.6802 0.0006 17 6 4.0753 2.5216 0.0011 18 6 3.4405 1.2844 -0.0044 19 8 4.1775 0.1459 -0.0096 20 6 5.5129 0.2822 -0.1300 21 1 5.9570 1.2666 -0.1342 22 6 6.3168 -0.8419 -0.2484 23 7 7.6198 -0.7089 -0.3665 24 14 5.5484 -2.5445 -0.2418 25 1 5.2143 -2.9423 -1.6329 26 1 6.5095 -3.5190 0.3344 27 1 4.3107 -2.5259 0.5786 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2156 2.3144 -0.0016 32 1 0.0593 4.7987 -0.0008 33 1 2.8349 6.1031 0.0015 34 1 2.5484 8.5271 -0.0631 35 1 -0.9157 8.9846 -1.0087 36 1 -1.9970 11.2502 -0.6459 37 1 2.2150 10.8344 1.2423 38 1 3.8277 4.6397 0.0014 39 1 5.1540 2.5736 0.0011 40 1 8.1822 -1.4951 -0.4489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072288161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:39 Heat of formation + Delta-G solvation = -10.100036 kcal Electronic energy + Delta-G solvation = -25534.236133 eV Core-core repulsion = 21601.056792 eV Total energy + Delta-G solvation = -3933.179341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.40810 -39.89798 -37.91270 -37.73157 -36.68354 -33.97494 -33.11814 -32.45887 -29.92849 -29.50390 -28.79924 -26.80099 -25.65794 -24.38387 -23.23223 -22.02603 -21.36366 -19.54630 -19.45610 -18.22332 -18.04158 -17.84275 -17.41241 -16.35911 -16.04899 -15.62039 -15.40714 -15.00460 -14.78415 -14.54940 -14.06517 -14.00143 -13.85820 -13.69882 -13.33782 -13.26487 -13.09976 -12.74805 -12.57357 -12.38010 -12.01440 -11.99364 -11.66258 -11.17939 -11.13329 -11.03561 -10.93285 -10.79368 -10.44028 -10.33662 -9.97043 -9.65393 -9.54026 -8.97070 -8.94540 -8.20875 -8.11838 -7.11432 -6.63093 -4.22539 0.65076 0.90095 1.38372 1.69221 1.95406 2.23166 2.59933 3.13863 3.15110 3.18500 3.35505 3.43059 3.74215 4.11334 4.31952 4.51386 4.60419 4.83156 4.91064 5.06364 5.07375 5.25289 5.29502 5.38742 5.39025 5.42644 5.58351 5.63746 5.67210 5.81855 5.89436 5.94700 6.01633 6.25026 6.31341 6.40155 6.50039 6.69885 6.84755 7.08535 7.26196 7.30582 7.44904 7.73795 7.93596 8.09013 8.70233 9.31685 10.42377 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.001853 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.572528 B =15106.811728 C =16300.377914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.051 3.949 4 C -0.135 4.135 5 C -0.160 4.160 6 C 0.040 3.960 7 C -0.276 4.276 8 C 0.558 3.442 9 O -0.540 6.540 10 N -0.665 5.665 11 C 0.145 3.855 12 C -0.126 4.126 13 C -0.206 4.206 14 S 0.107 5.893 15 C -0.262 4.262 16 C -0.060 4.060 17 C -0.211 4.211 18 C 0.156 3.844 19 O -0.187 6.187 20 C -0.388 4.388 21 H 0.111 0.889 22 C 0.067 3.933 23 N -0.863 5.863 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.254 1.254 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.412 0.588 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.119 0.881 39 H 0.144 0.856 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.920 17.945 0.581 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.006 3.994 4 C -0.154 4.154 5 C -0.161 4.161 6 C 0.021 3.979 7 C -0.297 4.297 8 C 0.351 3.649 9 O -0.419 6.419 10 N -0.311 5.311 11 C 0.039 3.961 12 C -0.157 4.157 13 C -0.341 4.341 14 S 0.368 5.632 15 C -0.400 4.400 16 C -0.079 4.079 17 C -0.230 4.230 18 C 0.101 3.899 19 O -0.089 6.089 20 C -0.462 4.462 21 H 0.129 0.871 22 C -0.139 4.139 23 N -0.499 5.499 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.177 1.177 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.249 0.751 35 H 0.173 0.827 36 H 0.185 0.815 37 H 0.184 0.816 38 H 0.137 0.863 39 H 0.162 0.838 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.563 18.744 1.110 23.163 hybrid contribution 0.410 -1.875 -0.536 1.993 sum -13.153 16.869 0.574 21.398 Atomic orbital electron populations 1.22939 0.79843 1.03182 1.00676 1.86175 1.19902 1.26342 1.89861 1.18033 0.89251 0.84665 1.07401 1.20894 0.98732 0.90830 1.04949 1.18213 0.92836 0.91411 1.13673 1.22257 0.99260 0.90870 0.85544 1.22386 1.00001 0.91153 1.16181 1.18537 0.87811 0.83540 0.74980 1.90781 1.14100 1.87284 1.49704 1.43344 1.10310 1.03530 1.73904 1.16792 0.93381 0.87131 0.98788 1.20251 0.94893 0.98216 1.02367 1.25520 1.04450 0.97358 1.06790 1.84135 1.08776 1.15908 1.54423 1.25198 1.06216 0.98126 1.10500 1.20993 0.92401 0.97619 0.96868 1.20976 1.01273 0.90509 1.10255 1.18634 0.87710 0.87032 0.96530 1.83589 1.20512 1.27556 1.77286 1.20918 0.77159 0.97243 1.50921 0.87126 1.24534 0.94550 0.99816 0.94994 1.69624 1.03206 1.32147 1.44886 0.86156 0.79900 0.81282 0.79655 1.19596 1.20574 1.17738 0.93233 0.88914 0.93242 0.85615 0.85728 0.85330 0.75147 0.82685 0.81533 0.81602 0.86278 0.83832 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.31 -5.89 10.28 -34.19 -0.35 -6.24 16 3 C 0.05 1.01 6.70 -39.12 -0.26 0.75 16 4 C -0.13 -2.21 8.77 -38.99 -0.34 -2.55 16 5 C -0.16 -2.54 5.87 -105.04 -0.62 -3.15 16 6 C 0.04 0.56 9.45 -37.19 -0.35 0.21 16 7 C -0.28 -3.43 9.41 -37.51 -0.35 -3.79 16 8 C 0.56 7.32 7.64 -13.05 -0.10 7.22 16 9 O -0.54 -8.64 13.91 5.14 0.07 -8.56 16 10 N -0.66 -6.96 5.41 -12.14 -0.07 -7.03 16 11 C 0.15 1.59 6.26 -85.14 -0.53 1.06 16 12 C -0.13 -1.43 8.86 -41.07 -0.36 -1.79 16 13 C -0.21 -1.87 11.22 29.03 0.33 -1.54 16 14 S 0.11 0.87 23.33 -107.50 -2.51 -1.64 16 15 C -0.26 -2.37 11.19 29.19 0.33 -2.05 16 16 C -0.06 -0.99 9.40 -39.12 -0.37 -1.36 16 17 C -0.21 -4.17 9.14 -39.49 -0.36 -4.53 16 18 C 0.16 3.46 6.67 -38.76 -0.26 3.20 16 19 O -0.19 -4.77 8.35 -13.98 -0.12 -4.89 16 20 C -0.39 -10.33 9.94 30.91 0.31 -10.02 16 21 H 0.11 2.95 5.42 -52.49 -0.28 2.66 16 22 C 0.07 1.79 5.49 -17.51 -0.10 1.69 16 23 N -0.86 -23.59 13.96 55.48 0.77 -22.81 16 24 Si 0.91 20.95 28.62 -169.99 -4.86 16.08 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.25 -6.01 7.11 56.52 0.40 -5.61 16 28 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 31 H 0.13 1.69 6.28 -52.49 -0.33 1.37 16 32 H 0.12 1.68 7.52 -52.49 -0.39 1.28 16 33 H 0.13 1.35 6.06 -52.48 -0.32 1.04 16 34 H 0.41 3.06 8.81 -40.82 -0.36 2.70 16 35 H 0.16 1.96 6.56 -52.49 -0.34 1.62 16 36 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.59 6.15 -52.49 -0.32 1.27 16 39 H 0.14 2.91 5.62 -52.49 -0.29 2.62 16 40 H 0.28 7.15 8.31 -40.81 -0.34 6.81 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -30.93 361.29 -7.52 -38.45 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -3.85 Total: 6.49 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.05 Total: -15.29 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.71 Total: -29.85 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.40 Total: -19.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.86 Total: 16.08 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.93 -7.52 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072288161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.351 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds