Wall clock time and date at job start Tue Mar 31 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38770 * 119.90136 * 2 1 4 4 N 1.31768 * 120.12424 * 180.02562 * 3 2 1 5 5 C 1.33042 * 119.92717 * 0.02562 * 4 3 2 6 6 C 1.48107 * 120.10194 * 180.02562 * 5 4 3 7 7 O 1.21526 * 120.00166 * 186.25385 * 6 5 4 8 8 N 1.34780 * 119.99551 * 6.24035 * 6 5 4 9 9 C 1.46500 * 120.00250 * 6.46077 * 8 6 5 10 10 C 1.50697 * 109.46699 * 274.15231 * 9 8 6 11 11 H 1.07996 * 120.00446 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99832 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00004 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99903 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47422 * 59.99669 * 14 12 10 16 16 H 1.48500 * 109.47164 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46965 * 299.99498 * 14 12 10 18 18 C 1.39829 * 119.99715 * 186.44809 * 8 6 5 19 19 C 1.38923 * 120.06870 * 7.77854 * 18 8 6 20 20 C 1.38094 * 119.95586 * 179.97438 * 19 18 8 21 21 C 1.38281 * 120.08440 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.93505 * 180.02562 * 21 20 19 23 23 C 1.38380 * 120.13322 * 0.02562 * 21 20 19 24 24 Cl 1.73606 * 119.97741 * 179.97438 * 23 21 20 25 25 C 1.38246 * 120.04702 * 359.68563 * 23 21 20 26 26 C 1.39426 * 119.80145 * 0.27348 * 5 4 3 27 27 N 1.32100 * 119.87135 * 359.41585 * 26 5 4 28 28 H 1.08994 * 109.47635 * 89.99734 * 1 2 3 29 29 H 1.09005 * 109.46979 * 210.00227 * 1 2 3 30 30 H 1.09000 * 109.47168 * 329.99165 * 1 2 3 31 31 H 1.08001 * 119.93590 * 0.02678 * 3 2 1 32 32 H 1.08995 * 109.47219 * 34.14783 * 9 8 6 33 33 H 1.08996 * 109.47020 * 154.15047 * 9 8 6 34 34 H 0.97003 * 120.00046 * 180.02562 * 13 12 10 35 35 H 1.08010 * 120.02244 * 0.02562 * 19 18 8 36 36 H 1.07997 * 119.95414 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.47497 * 89.99826 * 22 21 20 38 38 H 1.08996 * 109.47225 * 209.99693 * 22 21 20 39 39 H 1.09008 * 109.46668 * 329.99843 * 22 21 20 40 40 H 1.08005 * 120.04395 * 180.30312 * 25 23 21 41 41 H 1.07996 * 120.05834 * 179.72088 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 -0.0005 5 6 4.1847 0.0577 -0.0015 6 6 5.6658 0.0589 -0.0015 7 8 6.2743 -0.9866 -0.1171 8 7 6.3386 1.2197 0.1264 9 6 5.6120 2.4605 0.4069 10 6 5.1359 3.0673 -0.8878 11 1 5.3531 2.5780 -1.8257 12 6 4.4237 4.2479 -0.8749 13 7 4.1596 4.8441 0.2671 14 14 3.8341 5.0004 -2.4798 15 1 2.9327 4.0452 -3.1728 16 1 3.0974 6.2581 -2.1955 17 1 5.0029 5.2960 -3.3467 18 6 7.7303 1.2396 -0.0084 19 6 8.4049 0.1015 -0.4320 20 6 9.7793 0.1239 -0.5648 21 6 10.4847 1.2780 -0.2771 22 6 11.9844 1.2989 -0.4238 23 6 9.8163 2.4137 0.1451 24 17 10.7061 3.8601 0.5057 25 6 8.4400 2.3991 0.2742 26 6 3.4866 -1.1492 -0.0079 27 7 2.1656 -1.1452 -0.0011 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5140 31 1 1.6562 2.1367 0.0004 32 1 4.7543 2.2434 1.0434 33 1 6.2735 3.1619 0.9153 34 1 3.6582 5.6745 0.2762 35 1 7.8548 -0.8001 -0.6581 36 1 10.3037 -0.7607 -0.8945 37 1 12.2464 1.6082 -1.4356 38 1 12.4098 2.0017 0.2925 39 1 12.3819 0.3017 -0.2343 40 1 7.9179 3.2871 0.5990 41 1 4.0248 -2.0855 -0.0133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072288704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:21 Heat of formation + Delta-G solvation = 63.303239 kcal Electronic energy + Delta-G solvation = -27655.992336 eV Core-core repulsion = 23756.245045 eV Total energy + Delta-G solvation = -3899.747291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11485 -40.00349 -38.26620 -36.18619 -35.61294 -34.20679 -32.75920 -32.57456 -31.48439 -30.38006 -28.41026 -27.59994 -26.06365 -24.24888 -23.69979 -23.25734 -21.89126 -21.40924 -19.78951 -17.74561 -16.90212 -16.66854 -16.55490 -15.86551 -15.51002 -15.17629 -15.06113 -14.62007 -14.41917 -14.17583 -13.94191 -13.80315 -13.36047 -13.16524 -12.74663 -12.51971 -12.45286 -12.36938 -12.20694 -12.18443 -11.98712 -11.62608 -11.43121 -11.10694 -11.00935 -10.97848 -10.77374 -10.55886 -10.31431 -10.24424 -10.04455 -9.35280 -9.09256 -8.94395 -8.57642 -8.40209 -8.30166 -7.29619 -6.15568 -4.14143 0.64652 1.45142 1.60388 1.67093 2.42810 3.03427 3.21726 3.27002 3.30774 3.40075 4.01704 4.20572 4.21369 4.33656 4.46972 4.69325 4.98827 5.09851 5.15246 5.20505 5.24970 5.30469 5.45429 5.53865 5.67767 5.69994 5.74579 5.83492 5.87193 5.93504 5.96782 6.07520 6.12801 6.50280 6.53623 6.61158 6.74422 6.81312 7.08646 7.26589 7.53135 7.56779 7.73010 7.90838 8.04323 8.09790 8.49123 8.80928 9.43960 10.92571 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.004209 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.540282 B = 6650.381151 C = 8604.526499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.088 3.912 3 C 0.046 3.954 4 N -0.322 5.322 5 C 0.012 3.988 6 C 0.577 3.423 7 O -0.536 6.536 8 N -0.515 5.515 9 C 0.230 3.770 10 C -0.492 4.492 11 H 0.053 0.947 12 C 0.072 3.928 13 N -0.888 5.888 14 Si 0.887 3.113 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.178 3.822 19 C -0.162 4.162 20 C -0.093 4.093 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.014 4.014 24 Cl -0.078 7.078 25 C -0.133 4.133 26 C 0.106 3.894 27 N -0.456 5.456 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.177 0.823 36 H 0.127 0.873 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 -6.960 0.844 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.053 4.053 3 C -0.116 4.116 4 N -0.038 5.038 5 C -0.128 4.128 6 C 0.366 3.634 7 O -0.416 6.416 8 N -0.232 5.232 9 C 0.112 3.888 10 C -0.532 4.532 11 H 0.071 0.929 12 C -0.130 4.130 13 N -0.527 5.527 14 Si 0.715 3.285 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.202 1.202 18 C 0.081 3.919 19 C -0.182 4.182 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.166 4.166 23 C -0.041 4.041 24 Cl -0.049 7.049 25 C -0.154 4.154 26 C -0.054 4.054 27 N -0.172 5.172 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.194 0.806 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.166 0.834 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.454 -7.181 0.931 7.646 hybrid contribution -0.407 0.992 -0.997 1.464 sum 2.047 -6.190 -0.066 6.520 Atomic orbital electron populations 1.20695 0.87983 1.03778 1.03357 1.22631 0.98384 0.90247 0.94011 1.23922 0.91212 0.98761 0.97726 1.69697 1.07481 1.25330 1.01337 1.21957 0.95361 0.91356 1.04132 1.17827 0.85808 0.83035 0.76715 1.90431 1.67448 1.32314 1.51418 1.45984 1.04250 1.11083 1.61867 1.20160 0.91949 0.78198 0.98525 1.21005 1.34051 1.06336 0.91797 0.92902 1.24702 0.95782 0.96579 0.95954 1.69897 1.39933 1.18244 1.24621 0.86741 0.79109 0.78564 0.84133 1.20432 1.21106 1.20238 1.17816 0.83114 0.94016 0.96908 1.22516 0.94594 1.00583 1.00518 1.20840 0.93736 0.96732 0.99874 1.19624 0.96357 0.92673 1.03264 1.20743 0.91100 1.02438 1.02320 1.20376 0.91583 0.87635 1.04477 1.98326 1.75577 1.37557 1.93425 1.20890 0.91778 0.99158 1.03612 1.23628 0.90078 0.98894 0.92844 1.68382 1.08163 1.29015 1.11631 0.90021 0.90376 0.90075 0.81279 0.91083 0.94245 0.92669 0.80642 0.85535 0.91434 0.91379 0.91745 0.83404 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.19 36.01 0.37 -0.66 16 2 C 0.09 1.30 6.79 -82.28 -0.56 0.74 16 3 C 0.05 0.78 10.88 -17.38 -0.19 0.59 16 4 N -0.32 -6.48 5.00 -9.62 -0.05 -6.53 16 5 C 0.01 0.23 6.54 -82.85 -0.54 -0.31 16 6 C 0.58 11.72 7.53 -12.21 -0.09 11.62 16 7 O -0.54 -10.65 12.88 5.34 0.07 -10.58 16 8 N -0.51 -10.95 2.69 -115.71 -0.31 -11.26 16 9 C 0.23 5.33 4.44 -5.20 -0.02 5.30 16 10 C -0.49 -12.32 7.45 -34.44 -0.26 -12.58 16 11 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 12 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 13 N -0.89 -23.12 13.29 55.43 0.74 -22.38 16 14 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 C 0.18 3.57 6.48 -83.73 -0.54 3.02 16 19 C -0.16 -2.94 8.97 -39.38 -0.35 -3.29 16 20 C -0.09 -1.43 9.69 -39.62 -0.38 -1.81 16 21 C -0.12 -1.79 5.88 -104.55 -0.62 -2.41 16 22 C -0.11 -1.29 9.61 36.01 0.35 -0.95 16 23 C -0.01 -0.23 6.31 -39.53 -0.25 -0.48 16 24 Cl -0.08 -1.19 27.28 -51.86 -1.41 -2.61 16 25 C -0.13 -2.57 9.06 -39.35 -0.36 -2.93 16 26 C 0.11 1.75 10.77 -16.99 -0.18 1.57 16 27 N -0.46 -7.25 10.41 -8.94 -0.09 -7.34 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 32 H 0.07 1.72 5.76 -51.93 -0.30 1.42 16 33 H 0.04 0.96 5.76 -51.93 -0.30 0.66 16 34 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.18 3.28 4.74 -55.09 -0.26 3.01 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.79 6.89 -51.93 -0.36 0.43 16 39 H 0.06 0.64 8.08 -51.92 -0.42 0.22 16 40 H 0.15 3.03 5.94 -52.48 -0.31 2.72 16 41 H 0.17 2.54 7.66 -52.49 -0.40 2.14 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -27.63 358.04 -8.85 -36.48 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.43 Total: 4.54 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.73 Total: -0.83 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.28 Total: -47.51 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.41 Total: -2.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.63 -8.85 -36.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072288704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.784 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds