Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34220 * 117.00207 * 2 1 4 4 O 1.20829 * 120.00083 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00164 * 179.97438 * 3 2 1 6 6 N 1.46507 * 109.46881 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99576 * 263.10024 * 6 5 3 8 8 H 1.08002 * 119.99323 * 142.06413 * 7 6 5 9 9 C 1.38950 * 120.00191 * 322.05711 * 7 6 5 10 10 N 1.31414 * 119.99874 * 158.26437 * 9 7 6 11 11 Si 1.86796 * 119.99982 * 338.26731 * 9 7 6 12 12 H 1.48496 * 109.47183 * 95.91344 * 11 9 7 13 13 H 1.48502 * 109.47016 * 215.91361 * 11 9 7 14 14 H 1.48498 * 109.47110 * 335.90884 * 11 9 7 15 15 C 1.34778 * 120.00050 * 83.10476 * 6 5 3 16 16 O 1.21289 * 119.99890 * 359.97438 * 15 6 5 17 17 C 1.50696 * 119.99989 * 180.02562 * 15 6 5 18 18 C 1.50696 * 109.47217 * 179.97438 * 17 15 6 19 19 C 1.39866 * 126.03906 * 270.02328 * 18 17 15 20 20 C 1.50703 * 125.89975 * 359.94013 * 19 18 17 21 21 N 1.30836 * 108.20313 * 179.97438 * 19 18 17 22 22 N 1.40087 * 108.20596 * 359.77596 * 21 19 18 23 23 C 1.46496 * 126.03992 * 180.23684 * 22 21 19 24 24 F 1.39908 * 109.47291 * 30.15317 * 23 22 21 25 25 F 1.39897 * 109.47328 * 150.15354 * 23 22 21 26 26 C 1.34945 * 107.92453 * 0.36686 * 22 21 19 27 27 C 1.50702 * 126.12940 * 179.90656 * 26 22 21 28 28 H 1.09007 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47736 * 300.00114 * 1 2 3 30 30 H 1.09000 * 109.46836 * 60.00428 * 1 2 3 31 31 H 1.09000 * 109.47172 * 60.00179 * 5 3 2 32 32 H 1.09003 * 109.47141 * 299.99508 * 5 3 2 33 33 H 0.96993 * 120.00227 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47306 * 59.99249 * 17 15 6 35 35 H 1.09007 * 109.46507 * 299.99705 * 17 15 6 36 36 H 1.08994 * 109.47218 * 90.00239 * 20 19 18 37 37 H 1.09004 * 109.46718 * 210.00362 * 20 19 18 38 38 H 1.08996 * 109.47016 * 329.99982 * 20 19 18 39 39 H 1.08998 * 109.47127 * 270.15504 * 23 22 21 40 40 H 1.09008 * 109.46807 * 269.69161 * 27 26 22 41 41 H 1.08995 * 109.47206 * 149.68975 * 27 26 22 42 42 H 1.08996 * 109.47233 * 29.68457 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.3133 3.2958 -1.1792 8 1 4.0349 4.3257 -1.3471 9 6 5.0075 2.5952 -2.1579 10 7 4.9610 2.9941 -3.4092 11 14 6.0069 1.0865 -1.6950 12 1 5.1946 -0.1351 -1.9255 13 1 7.2336 1.0300 -2.5299 14 1 6.3869 1.1651 -0.2616 15 6 4.0379 3.3664 1.1582 16 8 3.7441 2.8214 2.2012 17 6 4.4645 4.8117 1.1573 18 6 4.4423 5.3429 2.5674 19 6 3.3532 5.9503 3.2009 20 6 1.9962 6.1889 2.5903 21 7 3.7163 6.2764 4.4148 22 7 5.0483 5.8815 4.5942 23 6 5.8419 6.0547 5.8134 24 9 4.9983 6.0141 6.9288 25 9 6.7861 5.0266 5.9052 26 6 5.4722 5.3159 3.4447 27 6 6.8447 4.7496 3.1864 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8909 33 1 5.4459 2.5053 -4.0924 34 1 3.7794 5.3925 0.5398 35 1 5.4741 4.8922 0.7542 36 1 1.3549 5.3289 2.7828 37 1 1.5509 7.0804 3.0318 38 1 2.1016 6.3300 1.5146 39 1 6.3539 7.0164 5.7800 40 1 7.4899 5.5304 2.7835 41 1 6.7715 3.9325 2.4688 42 1 7.2655 4.3766 4.1201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072291710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = -118.832356 kcal Electronic energy + Delta-G solvation = -31574.254400 eV Core-core repulsion = 26807.503517 eV Total energy + Delta-G solvation = -4766.750883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.43557 -47.55078 -41.20600 -39.98123 -38.54452 -35.91112 -34.88246 -33.72539 -32.71036 -32.07314 -29.74194 -28.85920 -28.40499 -26.69359 -25.78539 -24.91990 -24.14524 -21.06969 -19.96817 -19.85769 -18.96243 -18.21320 -17.69573 -17.38386 -17.25220 -16.93129 -16.54777 -15.85411 -15.46513 -15.23255 -14.96816 -14.58881 -14.34520 -14.23620 -13.98151 -13.78254 -13.55584 -13.20825 -13.10241 -13.02140 -12.83890 -12.82479 -12.61082 -12.42701 -12.24052 -12.00448 -11.90325 -11.80381 -11.57029 -11.46097 -11.08706 -11.00844 -10.63767 -10.34791 -10.27337 -10.15192 -9.90643 -9.35335 -9.07166 -8.81170 -8.12239 -7.97957 -6.59743 -4.21243 1.74602 2.04564 2.85787 2.90865 2.93962 3.04510 3.15807 3.18327 3.34705 3.75550 3.93354 3.98740 4.33081 4.35972 4.69230 4.85453 4.96722 5.21619 5.36481 5.44426 5.44722 5.51038 5.59179 5.63475 5.67949 5.77604 5.79060 5.86645 5.89385 5.99676 6.11671 6.18683 6.29262 6.38016 6.50960 6.80597 6.85104 6.98514 7.12328 7.79602 7.93779 8.13131 8.39288 8.82957 9.19459 9.53207 10.50672 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.003870 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.356110 B = 7233.315057 C = 8228.301985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.450 3.550 4 O -0.490 6.490 5 C 0.110 3.890 6 N -0.453 5.453 7 C -0.343 4.343 8 H 0.109 0.891 9 C 0.067 3.933 10 N -0.851 5.851 11 Si 0.859 3.141 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.499 3.501 16 O -0.582 6.582 17 C -0.043 4.043 18 C -0.186 4.186 19 C 0.110 3.890 20 C -0.074 4.074 21 N -0.287 5.287 22 N -0.445 5.445 23 C 0.517 3.483 24 F -0.178 7.178 25 F -0.182 7.182 26 C 0.105 3.895 27 C -0.108 4.108 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.277 0.723 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 2.917 9.703 10.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.375 6.375 5 C -0.015 4.015 6 N -0.175 5.175 7 C -0.470 4.470 8 H 0.126 0.874 9 C -0.141 4.141 10 N -0.485 5.485 11 Si 0.685 3.315 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.179 1.179 15 C 0.289 3.711 16 O -0.465 6.465 17 C -0.083 4.083 18 C -0.197 4.197 19 C -0.059 4.059 20 C -0.132 4.132 21 N -0.107 5.107 22 N -0.238 5.238 23 C 0.382 3.618 24 F -0.159 7.159 25 F -0.164 7.164 26 C -0.017 4.017 27 C -0.166 4.166 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.165 0.835 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.544 3.466 11.290 11.910 hybrid contribution 0.488 -1.379 -0.738 1.639 sum 2.033 2.087 10.551 10.946 Atomic orbital electron populations 1.23128 0.77586 1.02801 1.02230 1.86521 1.22657 1.34619 1.84936 1.24779 0.92874 0.81181 0.72149 1.90598 1.66594 1.36249 1.44010 1.21364 0.86812 0.88691 1.04656 1.43432 1.58507 1.08175 1.07393 1.19103 1.36364 1.00054 0.91493 0.87388 1.25365 0.96147 0.97941 0.94649 1.69766 1.38395 1.40560 0.99790 0.87180 0.81044 0.82844 0.80396 1.19716 1.20691 1.17945 1.20401 0.79299 0.88850 0.82522 1.90575 1.52981 1.70977 1.31925 1.19709 1.04252 0.93217 0.91138 1.19470 0.92604 1.09266 0.98326 1.22348 0.96852 0.95672 0.91001 1.20230 0.89803 1.02580 1.00604 1.77339 0.89893 1.25185 1.18333 1.49387 1.11824 1.52379 1.10204 1.21107 0.77295 0.89849 0.73524 1.93106 1.72998 1.97093 1.52680 1.93037 1.64251 1.63835 1.95232 1.20739 0.97963 0.97277 0.85730 1.20774 0.89721 1.01710 1.04370 0.88783 0.92357 0.92195 0.87478 0.87568 0.91269 0.88427 0.88203 0.90045 0.91062 0.89893 0.83492 0.90094 0.89067 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.91 10.56 -39.23 -0.41 -7.33 16 3 C 0.45 9.83 7.98 36.01 0.29 10.12 16 4 O -0.49 -11.82 16.01 -18.75 -0.30 -12.12 16 5 C 0.11 2.41 4.49 -5.19 -0.02 2.39 16 6 N -0.45 -10.52 1.74 -116.09 -0.20 -10.72 16 7 C -0.34 -8.41 9.05 -14.93 -0.14 -8.55 16 8 H 0.11 2.77 7.24 -52.49 -0.38 2.39 16 9 C 0.07 1.66 5.27 -17.47 -0.09 1.56 16 10 N -0.85 -22.16 13.96 55.50 0.77 -21.39 16 11 Si 0.86 18.45 25.01 -169.99 -4.25 14.20 16 12 H -0.27 -5.59 6.71 56.52 0.38 -5.21 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 15 C 0.50 11.22 7.37 -10.99 -0.08 11.14 16 16 O -0.58 -14.36 15.73 5.55 0.09 -14.27 16 17 C -0.04 -0.80 4.30 -29.04 -0.12 -0.93 16 18 C -0.19 -3.37 4.59 -105.05 -0.48 -3.86 16 19 C 0.11 1.95 7.22 -82.41 -0.59 1.36 16 20 C -0.07 -1.12 10.26 36.01 0.37 -0.75 16 21 N -0.29 -5.12 12.41 33.67 0.42 -4.70 16 22 N -0.45 -7.04 3.97 -62.39 -0.25 -7.29 16 23 C 0.52 6.04 6.57 59.84 0.39 6.43 16 24 F -0.18 -2.38 17.36 2.25 0.04 -2.35 16 25 F -0.18 -2.15 14.49 2.25 0.03 -2.12 16 26 C 0.10 1.72 6.83 -82.26 -0.56 1.15 16 27 C -0.11 -1.42 9.63 36.01 0.35 -1.07 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.11 2.31 3.66 -51.93 -0.19 2.12 16 32 H 0.11 2.18 7.64 -51.93 -0.40 1.78 16 33 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.10 1.79 6.78 -51.93 -0.35 1.43 16 35 H 0.10 1.75 7.73 -51.93 -0.40 1.35 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.19 7.25 -51.93 -0.38 0.81 16 39 H 0.15 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 41 H 0.09 1.33 7.78 -51.93 -0.40 0.92 16 42 H 0.08 1.01 5.58 -51.93 -0.29 0.72 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -32.97 365.23 -3.10 -36.07 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.91 Total: 5.91 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 0.37 Total: 20.60 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.74 Total: -44.10 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.63 Total: -33.72 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.46 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.25 Total: 14.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.97 -3.10 -36.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072291710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.761 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds