Wall clock time and date at job start Tue Mar 31 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99532 * 2 1 4 4 C 1.38737 * 120.05170 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.70519 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 C 1.50700 * 109.47072 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00065 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00396 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.47139 * 89.99515 * 12 11 9 14 14 H 1.07999 * 119.99832 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99904 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99946 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00029 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47200 * 90.00142 * 17 15 13 19 19 H 1.48509 * 109.47079 * 209.99941 * 17 15 13 20 20 H 1.48500 * 109.47250 * 329.99832 * 17 15 13 21 21 C 1.46511 * 119.99704 * 359.97438 * 11 9 8 22 22 C 1.52993 * 109.46987 * 90.00265 * 21 11 9 23 23 F 1.39902 * 109.47306 * 59.99938 * 22 21 11 24 24 F 1.39897 * 109.47145 * 179.97438 * 22 21 11 25 25 F 1.39903 * 109.47420 * 300.00012 * 22 21 11 26 26 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 27 27 C 1.38149 * 120.05738 * 0.02562 * 26 6 5 28 28 H 1.09006 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47369 * 299.99418 * 1 2 3 30 30 H 1.08993 * 109.47840 * 59.99890 * 1 2 3 31 31 H 1.08001 * 120.03029 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97354 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 34 34 H 1.08997 * 109.47106 * 329.99123 * 7 6 5 35 35 H 1.09001 * 109.47089 * 300.00245 * 8 7 6 36 36 H 1.09005 * 109.46795 * 59.99925 * 8 7 6 37 37 H 1.09002 * 109.47118 * 209.99825 * 12 11 9 38 38 H 1.09006 * 109.47022 * 329.99971 * 12 11 9 39 39 H 0.96999 * 119.99825 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.46702 * 210.00080 * 21 11 9 41 41 H 1.09000 * 109.46949 * 330.00208 * 21 11 9 42 42 H 1.08005 * 119.97210 * 179.97438 * 26 6 5 43 43 H 1.07998 * 120.03203 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0089 8 6 4.2225 5.4783 -1.4311 9 6 4.9072 6.8208 -1.4237 10 8 5.1795 7.3569 -0.3704 11 7 5.2169 7.4258 -2.5875 12 6 5.8829 8.7305 -2.5804 13 6 7.3768 8.5319 -2.5769 14 1 7.7888 7.5336 -2.5801 15 6 8.2175 9.6246 -2.5696 16 7 9.5212 9.4513 -2.5671 17 14 7.5048 11.3514 -2.5633 18 1 7.3124 11.8024 -1.1616 19 1 8.4386 12.2749 -3.2566 20 1 6.1970 11.3497 -3.2668 21 6 4.8884 6.7779 -3.8599 22 6 3.4888 7.2073 -4.3044 23 9 3.4567 8.5966 -4.4664 24 9 3.1753 6.5892 -5.5196 25 9 2.5547 6.8294 -3.3338 26 6 1.9209 3.6048 0.0021 27 6 1.2913 2.3751 0.0016 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.0208 0.3800 -0.0014 32 1 5.1344 2.5751 0.0000 33 1 3.3560 5.7444 0.5232 34 1 4.9419 4.9365 0.5259 35 1 4.8524 4.7525 -1.9454 36 1 3.2663 5.5605 -1.9480 37 1 5.5930 9.2913 -3.4690 38 1 5.5880 9.2842 -1.6889 39 1 10.1127 10.2201 -2.5615 40 1 5.6161 7.0725 -4.6160 41 1 4.9134 5.6956 -3.7336 42 1 1.3340 4.5115 0.0038 43 1 0.2128 2.3201 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072306444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:11 Heat of formation + Delta-G solvation = -204.727385 kcal Electronic energy + Delta-G solvation = -30567.042579 eV Core-core repulsion = 25776.647046 eV Total energy + Delta-G solvation = -4790.395533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.96913 -47.52979 -47.41050 -40.34520 -39.41315 -37.85956 -35.49739 -33.55344 -32.66355 -31.23508 -29.93949 -29.32516 -27.87663 -27.13803 -24.43330 -23.38676 -22.80034 -22.18184 -20.87166 -19.05358 -18.41615 -18.35281 -18.28965 -17.58015 -16.88062 -16.47819 -16.39701 -15.98651 -15.56003 -15.21418 -15.02225 -14.44856 -14.31582 -14.26676 -14.20446 -13.91116 -13.87479 -13.68811 -13.60836 -13.58559 -13.33404 -12.90865 -12.74556 -12.55831 -12.33803 -12.21279 -12.17338 -11.89565 -11.60994 -11.41875 -11.12326 -11.04528 -11.03912 -10.71515 -10.58843 -10.25620 -9.65341 -9.25217 -9.14155 -8.65788 -8.21303 -8.11736 -6.16036 -4.16396 1.20101 1.26965 2.73800 3.03739 3.17239 3.25310 3.30529 3.34520 3.38954 3.62426 4.01981 4.13866 4.33984 4.34286 4.58795 4.69700 4.72619 4.82133 4.83196 5.03800 5.08929 5.13479 5.16763 5.17162 5.23358 5.33476 5.35639 5.49353 5.52962 5.72223 5.82334 6.01070 6.12625 6.22138 6.25839 6.53840 6.60010 6.62873 6.81479 7.02018 7.18437 7.49672 7.87751 8.35789 8.69410 8.85774 9.43282 10.96786 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.002843 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.430874 B = 9845.381727 C =10999.112272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.117 3.883 4 C -0.149 4.149 5 C -0.076 4.076 6 C -0.112 4.112 7 C -0.061 4.061 8 C -0.149 4.149 9 C 0.514 3.486 10 O -0.521 6.521 11 N -0.593 5.593 12 C 0.212 3.788 13 C -0.534 4.534 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.894 5.894 17 Si 0.872 3.128 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.074 3.926 22 C 0.428 3.572 23 F -0.177 7.177 24 F -0.186 7.186 25 F -0.185 7.185 26 C -0.076 4.076 27 C -0.206 4.206 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.042 0.958 39 H 0.266 0.734 40 H 0.132 0.868 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.892 -15.459 0.005 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.112 4.112 7 C -0.098 4.098 8 C -0.189 4.189 9 C 0.302 3.698 10 O -0.396 6.396 11 N -0.325 5.325 12 C 0.092 3.908 13 C -0.572 4.572 14 H 0.095 0.905 15 C -0.128 4.128 16 N -0.532 5.532 17 Si 0.699 3.301 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.188 1.188 21 C -0.054 4.054 22 C 0.372 3.628 23 F -0.159 7.159 24 F -0.167 7.167 25 F -0.167 7.167 26 C -0.094 4.094 27 C -0.225 4.225 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.495 -15.217 0.599 23.195 hybrid contribution -0.743 1.119 -0.267 1.370 sum -18.238 -14.098 0.332 23.055 Atomic orbital electron populations 1.23030 0.78559 1.03773 1.01359 1.86056 1.21261 1.27155 1.88946 1.19037 0.92417 0.84036 0.97325 1.20424 0.91290 0.98675 1.06417 1.20954 1.00141 0.90885 0.97402 1.19896 0.93510 0.95386 1.02399 1.20271 1.01530 0.92467 0.95553 1.21968 1.02455 0.95104 0.99401 1.20540 0.78689 0.86930 0.83628 1.90693 1.52897 1.65913 1.30072 1.47880 1.58851 1.22727 1.03045 1.19862 0.93611 0.79148 0.98193 1.21255 0.88342 0.95457 1.52166 0.90532 1.24826 0.94682 0.99024 0.94220 1.69886 1.02333 1.31000 1.49942 0.86901 0.79465 0.84696 0.79033 1.19808 1.20929 1.18829 1.22636 0.90477 1.00845 0.91402 1.21750 0.90653 0.75629 0.74768 1.93204 1.96983 1.30392 1.95310 1.93166 1.94303 1.82834 1.46442 1.93094 1.69447 1.90925 1.63188 1.20896 0.94094 0.97047 0.97357 1.21203 0.99868 0.92365 1.09061 0.88385 0.92720 0.92668 0.85292 0.85043 0.90264 0.89972 0.89026 0.88233 0.94546 0.94009 0.92423 0.85046 0.86609 0.85675 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.24 10.50 -19.43 -0.20 -3.44 16 3 C 0.12 1.26 6.69 -39.22 -0.26 1.00 16 4 C -0.15 -1.59 9.99 -39.43 -0.39 -1.99 16 5 C -0.08 -0.82 9.69 -39.61 -0.38 -1.20 16 6 C -0.11 -1.28 5.14 -104.60 -0.54 -1.82 16 7 C -0.06 -0.79 4.63 -27.88 -0.13 -0.92 16 8 C -0.15 -2.02 4.17 -27.88 -0.12 -2.14 16 9 C 0.51 9.68 7.34 -10.99 -0.08 9.60 16 10 O -0.52 -11.96 15.56 5.56 0.09 -11.88 16 11 N -0.59 -11.32 2.37 -175.05 -0.42 -11.74 16 12 C 0.21 4.94 4.02 -5.19 -0.02 4.92 16 13 C -0.53 -14.62 9.94 -34.44 -0.34 -14.96 16 14 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 17 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 21 C 0.07 1.05 5.33 -4.04 -0.02 1.03 16 22 C 0.43 5.95 3.29 37.15 0.12 6.08 16 23 F -0.18 -2.88 16.23 2.25 0.04 -2.84 16 24 F -0.19 -2.36 17.32 2.25 0.04 -2.32 16 25 F -0.18 -2.56 14.29 2.25 0.03 -2.52 16 26 C -0.08 -0.81 9.69 -39.60 -0.38 -1.19 16 27 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 30 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.09 1.08 7.40 -51.93 -0.38 0.69 16 36 H 0.10 1.23 5.48 -51.93 -0.28 0.95 16 37 H 0.04 0.82 6.32 -51.93 -0.33 0.49 16 38 H 0.04 1.05 6.85 -51.93 -0.36 0.70 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.13 1.82 8.07 -51.93 -0.42 1.40 16 41 H 0.12 1.26 6.44 -51.93 -0.33 0.92 16 42 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 43 H 0.13 0.98 6.30 -52.49 -0.33 0.64 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -33.44 369.64 -6.11 -39.55 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.35 Total: 0.01 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.01 Total: -0.80 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.36 Total: -37.76 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.12 Total: -15.32 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.11 Total: -7.69 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.44 -6.11 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072306444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.174 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds