Wall clock time and date at job start Tue Mar 31 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38264 * 119.94120 * 269.72815 * 3 2 1 5 5 C 1.38147 * 120.05371 * 179.72649 * 4 3 2 6 6 C 1.38729 * 119.94325 * 0.56215 * 5 4 3 7 7 O 1.35896 * 120.05584 * 179.68292 * 6 5 4 8 8 C 1.42897 * 117.00158 * 0.02788 * 7 6 5 9 9 C 1.50706 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99868 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99874 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99533 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47106 * 89.99661 * 12 11 9 14 14 H 1.07996 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00118 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00215 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47284 * 89.99614 * 17 15 13 19 19 H 1.48501 * 109.47338 * 210.00018 * 17 15 13 20 20 H 1.48505 * 109.46763 * 330.00203 * 17 15 13 21 21 C 1.46500 * 120.00096 * 359.97438 * 11 9 8 22 22 C 1.52992 * 109.46955 * 90.00656 * 21 11 9 23 23 F 1.39904 * 109.47494 * 59.99866 * 22 21 11 24 24 F 1.39901 * 109.47370 * 179.97438 * 22 21 11 25 25 F 1.39905 * 109.47209 * 300.00004 * 22 21 11 26 26 C 1.38734 * 119.88838 * 359.71080 * 6 5 4 27 27 C 1.38148 * 119.94498 * 359.97438 * 26 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 33 33 H 1.08001 * 119.97090 * 359.97145 * 4 3 2 34 34 H 1.08003 * 120.02750 * 180.25128 * 5 4 3 35 35 H 1.09005 * 109.47189 * 299.99450 * 8 7 6 36 36 H 1.08998 * 109.47190 * 59.99448 * 8 7 6 37 37 H 1.09001 * 109.46373 * 209.99565 * 12 11 9 38 38 H 1.08996 * 109.47133 * 329.99151 * 12 11 9 39 39 H 0.96994 * 120.00165 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47028 * 210.00282 * 21 11 9 41 41 H 1.08999 * 109.47149 * 330.00233 * 21 11 9 42 42 H 1.08005 * 120.02591 * 179.97438 * 26 6 5 43 43 H 1.07996 * 119.97313 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2678 2.0696 -1.1981 5 6 2.7229 3.3739 -1.2008 6 6 2.9549 4.0289 -0.0001 7 8 3.4087 5.3098 -0.0002 8 6 3.6249 5.9215 -1.2734 9 6 4.1234 7.3300 -1.0760 10 8 4.2778 7.7671 0.0447 11 7 4.3966 8.1041 -2.1449 12 6 4.8806 9.4735 -1.9530 13 6 6.3862 9.4696 -1.8876 14 1 6.9283 8.5400 -1.9794 15 6 7.0716 10.6527 -1.7106 16 7 6.4115 11.7847 -1.5983 17 14 8.9378 10.6479 -1.6288 18 1 9.4936 10.8187 -2.9952 19 1 9.3983 11.7638 -0.7640 20 1 9.4050 9.3571 -1.0622 21 6 4.2095 7.5762 -3.4987 22 6 2.7844 7.8733 -3.9694 23 9 2.5738 9.2564 -3.9749 24 9 2.6059 7.3698 -5.2624 25 9 1.8705 7.2659 -3.1016 26 6 2.7233 3.3738 1.2007 27 6 2.2619 2.0717 1.1981 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0919 1.5575 -2.1326 34 1 2.9028 3.8816 -2.1370 35 1 4.3659 5.3483 -1.8307 36 1 2.6881 5.9427 -1.8301 37 1 4.5548 10.0942 -2.7876 38 1 4.4776 9.8743 -1.0230 39 1 6.8936 12.6171 -1.4741 40 1 4.9215 8.0495 -4.1748 41 1 4.3736 6.4987 -3.4944 42 1 2.9035 3.8815 2.1368 43 1 2.0811 1.5615 2.1326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072306450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:34 Heat of formation + Delta-G solvation = -205.173339 kcal Electronic energy + Delta-G solvation = -30600.878919 eV Core-core repulsion = 25810.464048 eV Total energy + Delta-G solvation = -4790.414871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.98262 -47.56473 -47.39189 -40.40291 -39.22470 -37.66614 -35.43882 -33.73922 -32.88077 -31.21433 -29.76041 -29.31401 -28.33605 -26.48346 -23.83770 -23.45675 -23.29411 -22.46013 -20.95323 -19.29958 -18.52600 -18.40301 -18.23498 -17.68089 -16.66787 -16.30129 -16.03011 -15.89579 -15.68190 -15.26906 -14.61979 -14.42457 -14.36762 -14.26860 -14.12462 -13.95026 -13.89422 -13.65535 -13.57553 -13.53682 -13.45925 -13.17372 -12.70561 -12.64802 -12.37334 -12.29511 -12.09042 -11.90261 -11.39153 -11.34344 -11.20620 -11.05472 -10.88724 -10.84473 -10.71275 -10.28431 -9.85120 -9.24879 -9.12034 -8.54300 -8.18008 -8.13608 -6.15554 -4.21938 1.22307 1.31104 2.64929 2.75576 3.11595 3.24382 3.32154 3.36015 3.60943 3.62964 3.96950 4.09463 4.30038 4.35867 4.58424 4.60366 4.72244 4.73845 4.89374 4.94586 5.08546 5.11519 5.12889 5.19799 5.22182 5.27819 5.38238 5.42718 5.53088 5.62756 5.71882 5.90960 5.94208 6.17702 6.25801 6.48956 6.60231 6.73104 7.13040 7.26170 7.36547 7.78416 7.90098 8.05309 8.58354 8.81909 9.43707 10.92812 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002929 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.292477 B = 9558.235127 C =11036.579273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.128 4.128 4 C -0.077 4.077 5 C -0.208 4.208 6 C 0.131 3.869 7 O -0.285 6.285 8 C 0.028 3.972 9 C 0.515 3.485 10 O -0.495 6.495 11 N -0.593 5.593 12 C 0.244 3.756 13 C -0.536 4.536 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.070 3.930 22 C 0.428 3.572 23 F -0.171 7.171 24 F -0.186 7.186 25 F -0.187 7.187 26 C -0.147 4.147 27 C -0.078 4.078 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.266 0.734 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 -20.221 -3.670 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.128 4.128 4 C -0.095 4.095 5 C -0.227 4.227 6 C 0.085 3.915 7 O -0.197 6.197 8 C -0.051 4.051 9 C 0.300 3.700 10 O -0.367 6.367 11 N -0.327 5.327 12 C 0.126 3.874 13 C -0.575 4.575 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.058 4.058 22 C 0.371 3.629 23 F -0.153 7.153 24 F -0.167 7.167 25 F -0.169 7.169 26 C -0.166 4.166 27 C -0.096 4.096 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.153 0.847 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.889 -19.599 -2.818 22.133 hybrid contribution 0.767 0.165 -0.484 0.921 sum -9.122 -19.434 -3.302 21.721 Atomic orbital electron populations 1.21769 0.94992 1.01453 1.02281 1.20448 0.95962 0.92604 1.02579 1.19774 1.03126 0.96825 0.93089 1.20781 0.97365 0.93688 0.97636 1.21264 1.07521 0.96873 0.97062 1.19133 0.94184 0.83819 0.94343 1.86182 1.79995 1.23924 1.29625 1.22937 1.02644 0.93718 0.85811 1.19806 0.78705 0.85981 0.85505 1.90748 1.49827 1.73340 1.22789 1.48156 1.65136 1.17437 1.01934 1.19575 0.94782 0.73746 0.99292 1.21358 0.90962 0.93717 1.51415 0.92165 1.24933 0.98989 0.95258 0.94728 1.69929 1.35898 0.98264 1.48683 0.86454 0.84845 0.77920 0.77963 1.20535 1.20990 1.19815 1.22688 0.90695 1.03046 0.89372 1.21714 0.91185 0.75067 0.74886 1.93236 1.95854 1.30082 1.96082 1.93168 1.96321 1.87412 1.39833 1.93093 1.70856 1.83126 1.69819 1.20465 1.04518 0.95044 0.96540 1.20810 0.97586 0.93464 0.97728 0.92622 0.92591 0.92557 0.91248 0.91293 0.85934 0.85491 0.89454 0.88429 0.93772 0.93099 0.92472 0.84653 0.87233 0.84947 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.08 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.13 -1.23 5.13 -104.60 -0.54 -1.77 16 4 C -0.08 -0.77 9.69 -39.60 -0.38 -1.15 16 5 C -0.21 -2.43 9.04 -39.43 -0.36 -2.78 16 6 C 0.13 1.84 6.69 -39.22 -0.26 1.58 16 7 O -0.29 -4.84 9.67 -39.32 -0.38 -5.22 16 8 C 0.03 0.42 3.71 36.01 0.13 0.55 16 9 C 0.51 10.42 7.42 -10.98 -0.08 10.34 16 10 O -0.49 -12.47 16.08 -14.35 -0.23 -12.70 16 11 N -0.59 -11.60 2.37 -175.06 -0.42 -12.02 16 12 C 0.24 6.01 4.96 -5.19 -0.03 5.99 16 13 C -0.54 -14.36 9.39 -34.44 -0.32 -14.69 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 C 0.07 0.98 5.33 -4.05 -0.02 0.96 16 22 C 0.43 6.00 3.29 37.15 0.12 6.12 16 23 F -0.17 -2.88 16.22 2.25 0.04 -2.85 16 24 F -0.19 -2.31 17.32 2.25 0.04 -2.27 16 25 F -0.19 -2.67 14.29 2.25 0.03 -2.64 16 26 C -0.15 -1.85 9.99 -39.43 -0.39 -2.24 16 27 C -0.08 -0.80 9.69 -39.61 -0.38 -1.18 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 35 H 0.09 1.06 6.92 -51.93 -0.36 0.70 16 36 H 0.10 1.30 5.00 -51.93 -0.26 1.04 16 37 H 0.04 1.10 7.25 -51.93 -0.38 0.72 16 38 H 0.05 1.44 7.42 -51.93 -0.39 1.06 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.14 1.79 8.07 -51.93 -0.42 1.37 16 41 H 0.11 1.10 6.44 -51.93 -0.33 0.76 16 42 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -32.87 374.13 -7.36 -40.23 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.39 Total: -1.43 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -2.41 Total: 2.03 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.32 Total: -36.90 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.61 Total: -17.92 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.11 Total: -7.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.87 -7.36 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072306450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.939 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds