Wall clock time and date at job start Tue Mar 31 2020 05:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47084 * 2 1 4 4 S 1.71023 * 125.53193 * 95.69325 * 3 2 1 5 5 C 1.75959 * 90.64232 * 180.02562 * 4 3 2 6 6 N 1.37414 * 125.19690 * 180.02562 * 5 4 3 7 7 C 1.34783 * 119.99788 * 180.02562 * 6 5 4 8 8 O 1.21953 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.40442 * 119.99853 * 180.02562 * 7 6 5 10 10 H 1.08004 * 119.99682 * 359.97438 * 9 7 6 11 11 C 1.40048 * 120.00160 * 179.97438 * 9 7 6 12 12 N 1.30683 * 119.99830 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 120.00276 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47188 * 89.99816 * 13 11 9 15 15 H 1.48495 * 109.46965 * 210.00097 * 13 11 9 16 16 H 1.48503 * 109.46619 * 329.99905 * 13 11 9 17 17 N 1.30356 * 109.60286 * 359.97438 * 5 4 3 18 18 C 1.31859 * 116.00506 * 359.71225 * 17 5 4 19 19 C 1.47957 * 122.59352 * 180.30052 * 18 17 5 20 20 C 1.39674 * 120.14597 * 134.34743 * 19 18 17 21 21 C 1.37913 * 119.84633 * 179.76586 * 20 19 18 22 22 C 1.38427 * 120.14715 * 0.53595 * 21 20 19 23 23 C 1.50699 * 119.84696 * 179.71792 * 22 21 20 24 24 C 1.53002 * 109.47004 * 299.97680 * 23 22 21 25 25 C 1.52994 * 109.46907 * 59.97899 * 23 22 21 26 26 C 1.38429 * 120.30139 * 359.69798 * 22 21 20 27 27 C 1.37907 * 120.14911 * 0.04210 * 26 22 21 28 28 H 1.08999 * 109.47089 * 304.53466 * 1 2 3 29 29 H 1.08999 * 109.47072 * 64.53872 * 1 2 3 30 30 H 1.09007 * 109.46973 * 184.53577 * 1 2 3 31 31 H 1.08997 * 109.47405 * 239.99871 * 2 1 3 32 32 H 1.09007 * 109.47020 * 119.99874 * 2 1 3 33 33 H 0.96999 * 120.00058 * 0.02562 * 6 5 4 34 34 H 0.97001 * 119.99927 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.07794 * 359.97438 * 20 19 18 36 36 H 1.07999 * 119.92227 * 180.22989 * 21 20 19 37 37 H 1.08995 * 109.46985 * 179.97438 * 23 22 21 38 38 H 1.09002 * 109.47007 * 60.00696 * 24 23 22 39 39 H 1.09004 * 109.46922 * 179.97438 * 24 23 22 40 40 H 1.08990 * 109.47271 * 300.00151 * 24 23 22 41 41 H 1.09002 * 109.47676 * 299.99654 * 25 23 22 42 42 H 1.08997 * 109.47297 * 60.00337 * 25 23 22 43 43 H 1.09004 * 109.47012 * 179.97438 * 25 23 22 44 44 H 1.08001 * 119.92389 * 180.02562 * 26 22 21 45 45 H 1.07992 * 120.07691 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.4938 2.3119 1.3849 5 6 2.8800 3.7062 0.3835 6 7 3.3546 4.9088 0.8492 7 6 3.6160 5.9101 -0.0144 8 8 3.4318 5.7486 -1.2091 9 6 4.1015 7.1389 0.4615 10 1 4.2650 7.2817 1.5195 11 6 4.3737 8.1792 -0.4358 12 7 4.1754 8.0065 -1.7159 13 14 5.0202 9.8135 0.1971 14 1 6.5046 9.7817 0.2242 15 1 4.5647 10.9065 -0.6991 16 1 4.5051 10.0515 1.5695 17 7 2.6482 3.4237 -0.8678 18 6 2.1997 2.2080 -1.1125 19 6 1.8950 1.7311 -2.4795 20 6 2.3328 0.4722 -2.8972 21 6 2.0411 0.0319 -4.1711 22 6 1.3257 0.8390 -5.0389 23 6 1.0162 0.3536 -6.4316 24 6 2.3231 0.0742 -7.1765 25 6 0.1898 -0.9315 -6.3518 26 6 0.8930 2.0897 -4.6330 27 6 1.1732 2.5402 -3.3601 28 1 -0.3633 0.5826 0.8466 29 1 -0.3633 0.4418 -0.9278 30 1 -0.3633 -1.0245 0.0813 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5014 5.0371 1.7994 34 1 4.3642 8.7269 -2.3374 35 1 2.8956 -0.1563 -2.2229 36 1 2.3758 -0.9428 -4.4940 37 1 0.4500 1.1171 -6.9650 38 1 2.8892 -0.6894 -6.6431 39 1 2.0992 -0.2773 -8.1837 40 1 2.9118 0.9897 -7.2333 41 1 0.7559 -1.6951 -5.8184 42 1 -0.7413 -0.7324 -5.8212 43 1 -0.0345 -1.2824 -7.3592 44 1 0.3349 2.7142 -5.3149 45 1 0.8354 3.5163 -3.0449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072333499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:34 Heat of formation + Delta-G solvation = 15.035511 kcal Electronic energy + Delta-G solvation = -26984.697502 eV Core-core repulsion = 23286.159876 eV Total energy + Delta-G solvation = -3698.537625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.85679 -38.82811 -37.47145 -35.28359 -34.18659 -33.14492 -32.35543 -30.73696 -30.00879 -27.68853 -27.24069 -26.79634 -24.64570 -23.10266 -22.65325 -22.03019 -20.72270 -19.88357 -18.61742 -18.31014 -16.57788 -16.12986 -15.98837 -15.49425 -15.16333 -14.98925 -14.41225 -14.14224 -13.99660 -13.81268 -13.62766 -13.58519 -13.46316 -13.06819 -12.64704 -12.62841 -12.45639 -12.33859 -12.09006 -11.86483 -11.49183 -11.41032 -11.28796 -11.26595 -11.15812 -11.10970 -10.86784 -10.70847 -10.56076 -10.38439 -10.29395 -9.63587 -8.96423 -8.92740 -8.83565 -8.66628 -8.20566 -7.63828 -6.93761 -6.41635 -4.98980 1.10681 1.63709 1.68341 1.74957 2.33638 3.02338 3.09642 3.13227 3.49757 3.90235 4.03854 4.29538 4.41110 4.65962 4.76518 5.02003 5.10113 5.11894 5.19233 5.21311 5.28343 5.41418 5.48193 5.50158 5.60807 5.66873 5.69744 5.71280 5.78994 5.82253 5.87215 5.92890 5.98364 6.13729 6.14075 6.17389 6.22285 6.32236 6.37990 6.45120 6.77063 6.84165 6.89232 7.16121 7.22414 7.35363 7.82392 7.91709 8.55042 8.72197 9.17377 10.32633 10.53761 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.003188 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.603607 B = 8781.531224 C =10930.446075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C -0.297 4.297 4 S 0.056 5.944 5 C 0.337 3.663 6 N -0.639 5.639 7 C 0.530 3.470 8 O -0.515 6.515 9 C -0.532 4.532 10 H 0.072 0.928 11 C 0.086 3.914 12 N -0.740 5.740 13 Si 0.916 3.084 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.262 1.262 17 N -0.464 5.464 18 C 0.138 3.862 19 C -0.004 4.004 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.080 4.080 23 C -0.056 4.056 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.119 4.119 27 C -0.077 4.077 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.402 0.598 34 H 0.275 0.725 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.120 0.880 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -15.971 -1.884 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.421 4.421 4 S 0.310 5.690 5 C -0.033 4.033 6 N -0.288 5.288 7 C 0.336 3.664 8 O -0.392 6.392 9 C -0.568 4.568 10 H 0.090 0.910 11 C -0.137 4.137 12 N -0.367 5.367 13 Si 0.740 3.260 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.186 1.186 17 N -0.185 5.185 18 C 0.002 3.998 19 C -0.006 4.006 20 C -0.122 4.122 21 C -0.138 4.138 22 C -0.081 4.081 23 C -0.074 4.074 24 C -0.201 4.201 25 C -0.200 4.200 26 C -0.137 4.137 27 C -0.096 4.096 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.237 0.763 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.138 0.862 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.898 -15.608 -2.227 16.833 hybrid contribution 0.304 0.761 0.145 0.832 sum -5.594 -14.846 -2.082 16.001 Atomic orbital electron populations 1.21754 0.95129 1.00969 1.02308 1.19874 0.95588 0.89499 1.02356 1.24960 1.19287 1.03005 0.94880 1.83378 1.65393 1.08365 1.11909 1.24950 0.97086 0.91617 0.89653 1.44266 1.63748 1.08896 1.11882 1.17044 0.80719 0.82739 0.85875 1.90849 1.54229 1.79909 1.14246 1.19701 1.45277 0.96532 0.95275 0.91023 1.25750 0.93556 1.00132 0.94307 1.70042 1.31950 1.32219 1.02521 0.86224 0.79576 0.80551 0.79660 1.19429 1.20154 1.18619 1.67101 1.20748 1.15809 1.14808 1.19048 0.99521 0.88303 0.92896 1.18088 0.98080 0.93720 0.90745 1.21161 0.99764 0.95254 0.96010 1.20731 1.00009 0.99635 0.93403 1.19874 0.98389 0.94446 0.95359 1.20107 0.96878 0.97899 0.92558 1.21857 0.96771 1.02000 0.99502 1.21847 0.99887 0.96785 1.01439 1.20962 1.01109 0.95581 0.96073 1.21318 0.96481 0.99074 0.92758 0.92814 0.92493 0.92781 0.90141 0.91715 0.76271 0.91434 0.85849 0.86326 0.90612 0.92499 0.92658 0.92364 0.92492 0.92574 0.92676 0.86199 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 37.16 0.37 -1.35 16 2 C -0.03 -0.43 5.99 -27.88 -0.17 -0.60 16 3 C -0.30 -5.01 5.65 -34.64 -0.20 -5.20 16 4 S 0.06 0.94 23.16 -107.50 -2.49 -1.55 16 5 C 0.34 7.42 8.20 -88.29 -0.72 6.70 16 6 N -0.64 -14.50 5.33 -15.00 -0.08 -14.58 16 7 C 0.53 14.80 7.48 -15.43 -0.12 14.68 16 8 O -0.52 -16.57 13.45 4.96 0.07 -16.50 16 9 C -0.53 -14.24 9.24 -38.07 -0.35 -14.59 16 10 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 11 C 0.09 2.29 5.49 -17.36 -0.10 2.20 16 12 N -0.74 -21.31 11.70 55.55 0.65 -20.66 16 13 Si 0.92 19.06 29.56 -169.99 -5.02 14.03 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 17 N -0.46 -11.17 8.63 -10.30 -0.09 -11.26 16 18 C 0.14 2.77 6.27 -84.21 -0.53 2.24 16 19 C 0.00 -0.07 5.55 -104.84 -0.58 -0.65 16 20 C -0.10 -1.52 8.30 -39.16 -0.32 -1.85 16 21 C -0.12 -1.54 8.69 -39.63 -0.34 -1.88 16 22 C -0.08 -1.04 4.79 -104.48 -0.50 -1.54 16 23 C -0.06 -0.57 3.09 -91.77 -0.28 -0.85 16 24 C -0.14 -1.36 9.01 37.16 0.33 -1.03 16 25 C -0.14 -1.22 9.00 37.15 0.33 -0.88 16 26 C -0.12 -1.77 9.65 -39.63 -0.38 -2.15 16 27 C -0.08 -1.39 9.75 -39.17 -0.38 -1.77 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.97 4.86 -51.93 -0.25 0.72 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 7.46 8.77 -40.82 -0.36 7.11 16 34 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 35 H 0.12 1.64 6.35 -52.49 -0.33 1.31 16 36 H 0.12 1.23 7.08 -52.49 -0.37 0.86 16 37 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 38 H 0.06 0.52 7.38 -51.93 -0.38 0.13 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.47 7.37 -51.93 -0.38 0.08 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.12 1.55 7.94 -52.49 -0.42 1.14 16 45 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -33.97 386.15 -11.35 -45.32 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.26 Total: 7.92 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -3.94 Total: -8.53 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.48 Total: -46.50 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.07 Total: -16.50 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.03 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.97 -11.35 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072333499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.352 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds