Wall clock time and date at job start Tue Mar 31 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 117.00052 * 2 1 4 4 C 1.38472 * 120.00280 * 0.02562 * 3 2 1 5 5 C 1.38498 * 120.33757 * 179.97438 * 4 3 2 6 6 C 1.37784 * 120.34215 * 359.97438 * 5 4 3 7 7 C 1.39761 * 120.00301 * 0.02562 * 6 5 4 8 8 C 1.47547 * 120.16560 * 179.72300 * 7 6 5 9 9 O 1.21591 * 119.99920 * 234.84258 * 8 7 6 10 10 N 1.34779 * 120.00107 * 54.84517 * 8 7 6 11 11 C 1.46500 * 119.99712 * 185.52472 * 10 8 7 12 12 C 1.50705 * 109.46939 * 90.00428 * 11 10 8 13 13 H 1.08004 * 119.99954 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00082 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99631 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00160 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46974 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47372 * 119.99357 * 16 14 12 19 19 H 1.48500 * 109.47002 * 239.99698 * 16 14 12 20 20 C 1.46496 * 119.99975 * 5.52657 * 10 8 7 21 21 C 1.50693 * 109.47140 * 95.02454 * 20 10 8 22 22 C 1.34519 * 125.78815 * 90.00432 * 21 20 10 23 23 C 1.41386 * 106.83942 * 180.02562 * 22 21 20 24 24 C 1.34510 * 106.84284 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.79542 * 269.68990 * 21 20 10 26 26 C 1.39134 * 120.01049 * 179.97438 * 3 2 1 27 27 O 1.35754 * 120.16404 * 0.04485 * 26 3 2 28 28 C 1.42899 * 116.99569 * 269.97466 * 27 26 3 29 29 H 1.09001 * 109.47365 * 299.99423 * 1 2 3 30 30 H 1.08997 * 109.47329 * 60.00283 * 1 2 3 31 31 H 1.09007 * 109.46860 * 180.02562 * 1 2 3 32 32 H 1.08007 * 119.83244 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.82829 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.99930 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.46842 * 209.99605 * 11 10 8 36 36 H 1.08992 * 109.47356 * 329.99885 * 11 10 8 37 37 H 0.97002 * 120.00020 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.47316 * 215.02609 * 20 10 8 39 39 H 1.08999 * 109.47041 * 335.02190 * 20 10 8 40 40 H 1.07996 * 126.57904 * 0.03150 * 22 21 20 41 41 H 1.08001 * 126.57668 * 179.97438 * 23 22 21 42 42 H 1.07998 * 125.79229 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.46702 * 180.02562 * 28 27 26 44 44 H 1.08997 * 109.47700 * 299.99748 * 28 27 26 45 45 H 1.09000 * 109.47370 * 60.00647 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2923 2.3731 0.0005 5 6 1.9138 3.6108 0.0011 6 6 3.2888 3.6991 0.0016 7 6 4.0639 2.5361 0.0011 8 6 5.5366 2.6265 -0.0045 9 8 6.1774 2.0569 -0.8667 10 7 6.1715 3.3405 0.9460 11 6 7.6222 3.5312 0.8723 12 6 7.9253 4.7813 0.0871 13 1 7.1180 5.3742 -0.3170 14 6 9.2331 5.1675 -0.1164 15 7 10.2160 4.4453 0.3753 16 14 9.6088 6.7166 -1.0902 17 1 8.3374 7.3442 -1.5317 18 1 10.3605 7.6693 -0.2344 19 1 10.4271 6.3675 -2.2793 20 6 5.4111 3.9259 2.0529 21 6 5.4489 2.9940 3.2365 22 6 6.3726 3.0014 4.2144 23 6 6.0262 1.9662 5.1130 24 6 4.9112 1.3885 4.6308 25 8 4.5628 2.0190 3.4973 26 6 3.4358 1.2848 0.0005 27 8 4.1786 0.1485 0.0001 28 6 4.5336 -0.3948 1.2732 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2139 2.3135 0.0005 33 1 1.3176 4.5113 0.0011 34 1 3.7677 4.6672 0.0024 35 1 8.0276 3.6277 1.8795 36 1 8.0769 2.6726 0.3783 37 1 11.1362 4.7168 0.2319 38 1 5.8517 4.8835 2.3302 39 1 4.3772 4.0779 1.7430 40 1 7.2168 3.6699 4.2972 41 1 6.5553 1.6920 6.0137 42 1 4.3830 0.5613 5.0814 43 1 5.1253 -1.2990 1.1301 44 1 5.1183 0.3370 1.8305 45 1 3.6284 -0.6369 1.8302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072621981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:29 Heat of formation + Delta-G solvation = -46.539245 kcal Electronic energy + Delta-G solvation = -31623.893684 eV Core-core repulsion = 27382.214443 eV Total energy + Delta-G solvation = -4241.679240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.31767 -40.65913 -39.03644 -37.77942 -36.71498 -35.18883 -32.83337 -32.65898 -30.76037 -30.16485 -30.12101 -27.52494 -27.45714 -26.58953 -25.48044 -23.83462 -22.35411 -22.01933 -21.45024 -20.46029 -19.35547 -17.99222 -17.35415 -17.27123 -16.63346 -16.31094 -16.20444 -16.03042 -15.66637 -15.37978 -15.06255 -14.73879 -14.60317 -14.44910 -14.33787 -13.81328 -13.24735 -13.00909 -12.69242 -12.62226 -12.54476 -12.42891 -12.37497 -12.13171 -11.97559 -11.76979 -11.53952 -11.30832 -11.18165 -10.96966 -10.89268 -10.61856 -10.21047 -9.86329 -9.72389 -9.63672 -9.11542 -8.74266 -8.45736 -8.30275 -8.15419 -7.81721 -6.06548 -4.11937 0.98730 1.28115 1.90870 2.82289 2.99064 3.16462 3.29026 3.31609 3.37460 3.40865 3.64088 3.94196 4.01885 4.42803 4.69450 4.81344 4.93849 4.94319 4.95685 5.08723 5.18293 5.23237 5.26970 5.27490 5.28399 5.43663 5.48629 5.52936 5.53571 5.59132 5.86439 5.87747 6.02532 6.08605 6.20039 6.22809 6.31085 6.35811 6.50656 6.73319 6.99335 7.10169 7.32846 7.43602 7.48120 7.72287 7.89462 8.18651 8.25788 8.83898 8.99153 9.53380 11.01613 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.004250 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.778980 B = 6586.477413 C = 7835.591633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.104 3.896 4 C -0.189 4.189 5 C -0.089 4.089 6 C -0.118 4.118 7 C -0.095 4.095 8 C 0.557 3.443 9 O -0.509 6.509 10 N -0.587 5.587 11 C 0.246 3.754 12 C -0.530 4.530 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.178 3.822 21 C -0.023 4.023 22 C -0.193 4.193 23 C -0.211 4.211 24 C -0.054 4.054 25 O -0.174 6.174 26 C 0.112 3.888 27 O -0.314 6.314 28 C 0.042 3.958 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.263 0.737 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.196 0.804 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.992 -4.913 8.070 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.058 3.942 4 C -0.208 4.208 5 C -0.108 4.108 6 C -0.137 4.137 7 C -0.098 4.098 8 C 0.342 3.658 9 O -0.383 6.383 10 N -0.319 5.319 11 C 0.128 3.872 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.054 3.946 21 C -0.075 4.075 22 C -0.213 4.213 23 C -0.230 4.230 24 C -0.122 4.122 25 O -0.070 6.070 26 C 0.066 3.934 27 O -0.230 6.230 28 C -0.053 4.053 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.213 0.787 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.493 -5.597 7.261 21.542 hybrid contribution 0.213 0.989 0.031 1.012 sum -19.281 -4.608 7.292 21.123 Atomic orbital electron populations 1.23071 0.78748 1.03888 1.01232 1.86175 1.20933 1.26113 1.88714 1.19248 0.91185 0.85019 0.98721 1.21187 0.99937 0.91863 1.07804 1.20843 0.94161 0.97085 0.98670 1.21156 0.93580 0.97630 1.01304 1.20417 0.95249 0.92742 1.01437 1.17889 0.85782 0.79448 0.82662 1.90807 1.66724 1.44115 1.36696 1.48230 1.10872 1.51073 1.21738 1.19366 0.72053 0.97938 0.97852 1.21460 0.92287 1.08635 1.34489 0.92193 1.24923 0.96025 0.97287 0.95696 1.69946 0.99376 1.38508 1.45210 0.86446 0.78401 0.82736 0.79864 1.19717 1.20965 1.20871 1.20143 0.98788 0.93154 0.82505 1.23233 0.91487 0.93300 0.99439 1.21716 1.01585 1.02217 0.95804 1.21812 0.99073 0.99515 1.02596 1.23904 0.99462 1.00694 0.88141 1.84034 1.46576 1.38973 1.37453 1.17831 0.86159 0.86025 1.03350 1.86072 1.70136 1.37815 1.28957 1.22973 0.99283 0.98763 0.84239 0.92740 0.92629 0.88282 0.84965 0.84951 0.84354 0.94604 0.93564 0.92714 0.86683 0.88870 0.83183 0.83800 0.78748 0.89087 0.93394 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.08 10.28 -34.28 -0.35 -4.43 16 3 C 0.10 1.52 6.69 -39.16 -0.26 1.26 16 4 C -0.19 -2.19 9.03 -39.40 -0.36 -2.55 16 5 C -0.09 -1.03 10.02 -39.65 -0.40 -1.43 16 6 C -0.12 -1.72 7.48 -39.18 -0.29 -2.02 16 7 C -0.09 -1.74 4.92 -104.87 -0.52 -2.25 16 8 C 0.56 12.53 6.78 -12.46 -0.08 12.44 16 9 O -0.51 -13.80 16.33 2.66 0.04 -13.75 16 10 N -0.59 -12.64 2.44 -177.67 -0.43 -13.07 16 11 C 0.25 6.38 5.22 -5.19 -0.03 6.35 16 12 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 13 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 16 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.18 3.01 5.75 -5.20 -0.03 2.98 16 21 C -0.02 -0.38 6.90 -35.63 -0.25 -0.62 16 22 C -0.19 -3.05 10.81 -39.70 -0.43 -3.48 16 23 C -0.21 -2.83 10.91 -39.70 -0.43 -3.26 16 24 C -0.05 -0.68 12.09 29.41 0.36 -0.32 16 25 O -0.17 -2.66 9.46 5.71 0.05 -2.60 16 26 C 0.11 2.01 5.74 -38.59 -0.22 1.78 16 27 O -0.31 -6.07 9.42 -38.79 -0.37 -6.44 16 28 C 0.04 0.66 11.13 101.05 1.12 1.79 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.13 1.09 6.27 -52.48 -0.33 0.77 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.88 7.54 -52.49 -0.40 1.48 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.05 1.38 7.35 -51.93 -0.38 1.00 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.12 1.83 8.11 -51.93 -0.42 1.41 16 39 H 0.09 1.37 4.40 -51.93 -0.23 1.14 16 40 H 0.15 2.36 8.06 -52.49 -0.42 1.93 16 41 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.05 0.83 6.91 -51.93 -0.36 0.47 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -35.83 386.95 -6.59 -42.42 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.83 Total: 2.42 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.24 Total: -1.42 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.30 Total: -38.48 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.62 Total: -27.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.83 -6.59 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072621981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.120 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds