Wall clock time and date at job start Tue Mar 31 2020 07:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99739 * 2 1 4 4 H 1.48500 * 109.47273 * 240.00024 * 3 2 1 5 5 H 1.48503 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46989 * 120.00028 * 3 2 1 7 7 C 1.38811 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00343 * 178.11785 * 7 2 1 9 9 N 1.36940 * 119.99593 * 358.12121 * 7 2 1 10 10 C 1.46971 * 120.58930 * 217.10816 * 9 7 2 11 11 C 1.53371 * 108.63379 * 235.20487 * 10 9 7 12 12 N 1.46963 * 108.63583 * 310.57703 * 11 10 9 13 13 C 1.34774 * 120.59396 * 235.19947 * 12 11 10 14 14 O 1.21647 * 120.00102 * 5.80319 * 13 12 11 15 15 C 1.47084 * 119.99748 * 185.79263 * 13 12 11 16 16 C 1.39379 * 120.62692 * 75.65284 * 15 13 12 17 17 C 1.39629 * 118.69846 * 180.02562 * 16 15 13 18 18 C 1.34609 * 120.59274 * 359.89594 * 17 16 15 19 19 N 1.35822 * 121.18400 * 359.86842 * 18 17 16 20 20 H 0.97003 * 119.54937 * 180.20774 * 19 18 17 21 21 C 1.34620 * 120.90505 * 0.48489 * 19 18 17 22 22 O 1.21889 * 120.06377 * 179.68852 * 21 19 18 23 23 C 1.51598 * 119.95996 * 180.19936 * 18 17 16 24 24 C 1.52953 * 108.60275 * 70.93343 * 23 18 17 25 25 C 1.51700 * 110.94782 * 274.13667 * 24 23 18 26 26 C 1.51703 * 114.08031 * 67.59927 * 25 24 23 27 27 C 1.51461 * 119.14604 * 179.77016 * 17 16 15 28 28 C 1.46961 * 118.81033 * 55.48028 * 12 11 10 29 29 C 1.46964 * 120.59754 * 37.09196 * 9 7 2 30 30 H 0.97001 * 120.00424 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.60542 * 115.46246 * 10 9 7 32 32 H 1.08996 * 109.75322 * 355.03737 * 10 9 7 33 33 H 1.09004 * 109.60565 * 190.83449 * 11 10 9 34 34 H 1.09001 * 109.61109 * 70.32725 * 11 10 9 35 35 H 1.08003 * 120.65592 * 0.03162 * 16 15 13 36 36 H 1.09000 * 109.61763 * 190.67000 * 23 18 17 37 37 H 1.08999 * 109.61055 * 311.20362 * 23 18 17 38 38 H 1.09002 * 109.18875 * 34.51549 * 24 23 18 39 39 H 1.09003 * 109.18179 * 153.81433 * 24 23 18 40 40 H 1.08994 * 108.56889 * 188.79278 * 25 24 23 41 41 H 1.09001 * 108.56313 * 306.41119 * 25 24 23 42 42 H 1.08993 * 109.20372 * 52.91968 * 26 25 24 43 43 H 1.08994 * 109.20801 * 172.27157 * 26 25 24 44 44 H 1.09004 * 109.61777 * 228.45424 * 27 17 16 45 45 H 1.08993 * 109.62299 * 349.00182 * 27 17 16 46 46 H 1.09002 * 109.61218 * 64.26293 * 28 12 11 47 47 H 1.08999 * 109.61104 * 184.77133 * 28 12 11 48 48 H 1.09000 * 109.60528 * 244.53867 * 29 9 7 49 49 H 1.08996 * 109.60698 * 5.04543 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0899 -1.2023 -0.0302 9 7 1.3262 -2.3877 0.0400 10 6 1.8478 -3.5270 0.8081 11 6 1.9628 -4.7371 -0.1272 12 7 0.6937 -4.8929 -0.8518 13 6 0.0205 -6.0598 -0.8131 14 8 0.4053 -6.9603 -0.0915 15 6 -1.1797 -6.2443 -1.6431 16 6 -1.0672 -6.4674 -3.0143 17 6 -2.2330 -6.6366 -3.7639 18 6 -3.4411 -6.5872 -3.1723 19 7 -3.5617 -6.3751 -1.8361 20 1 -4.4440 -6.3469 -1.4339 21 6 -2.4738 -6.1979 -1.0632 22 8 -2.6001 -6.0031 0.1334 23 6 -4.6974 -6.7773 -3.9992 24 6 -4.7819 -8.2430 -4.4282 25 6 -3.9976 -8.4805 -5.7048 26 6 -2.4964 -8.3301 -5.5461 27 6 -2.1229 -6.8745 -5.2556 28 6 0.1751 -3.7554 -1.6244 29 6 0.0572 -2.5435 -0.6847 30 1 -0.4851 0.8400 0.0004 31 1 1.1655 -3.7600 1.6256 32 1 2.8304 -3.2810 1.2106 33 1 2.1621 -5.6344 0.4586 34 1 2.7725 -4.5741 -0.8384 35 1 -0.0974 -6.5087 -3.4878 36 1 -5.5716 -6.5202 -3.4011 37 1 -4.6543 -6.1395 -4.8820 38 1 -4.3759 -8.8722 -3.6362 39 1 -5.8260 -8.5075 -4.5958 40 1 -4.2096 -9.4889 -6.0599 41 1 -4.3395 -7.7717 -6.4591 42 1 -2.1583 -8.9583 -4.7220 43 1 -2.0049 -8.6491 -6.4651 44 1 -2.8057 -6.2089 -5.7838 45 1 -1.0998 -6.6871 -5.5816 46 1 0.8604 -3.5241 -2.4398 47 1 -0.8065 -4.0043 -2.0279 48 1 -0.7525 -2.7065 0.0266 49 1 -0.1422 -1.6461 -1.2704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073099746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:36 Heat of formation + Delta-G solvation = -22.779788 kcal Electronic energy + Delta-G solvation = -31390.859627 eV Core-core repulsion = 27318.336520 eV Total energy + Delta-G solvation = -4072.523107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.66643 -39.36417 -38.41417 -36.58651 -35.94779 -34.55177 -33.70028 -31.78590 -31.20433 -30.76976 -29.99032 -27.09143 -25.94565 -24.94774 -23.89051 -23.62198 -22.77469 -21.79724 -20.94101 -20.26680 -18.96920 -18.01967 -17.61017 -16.82518 -16.32777 -15.96819 -15.66557 -15.33799 -15.19615 -15.08173 -14.70537 -14.40139 -14.11174 -13.71159 -13.66985 -13.56270 -13.46765 -13.24026 -13.23738 -13.00758 -12.48936 -12.22991 -12.08333 -11.80133 -11.63651 -11.48314 -11.12867 -11.09727 -11.00841 -10.94659 -10.87457 -10.64309 -10.46842 -10.26932 -10.13443 -10.06136 -10.03396 -9.80838 -9.38325 -8.50062 -8.14304 -7.91531 -6.51428 -5.81091 -3.36924 0.51653 1.73787 2.59155 3.10412 3.36332 3.38947 3.42029 3.43141 3.70743 3.90429 4.28581 4.37197 4.45911 4.50265 4.56648 4.66505 4.76306 4.91501 4.96132 5.07837 5.12554 5.19137 5.33147 5.37542 5.41545 5.46001 5.58987 5.66769 5.72133 5.73106 5.83271 5.89807 5.92472 5.97425 5.99653 6.02848 6.09554 6.21182 6.30228 6.47598 6.52104 6.55433 6.80815 6.92482 7.05297 7.36414 7.63858 7.76080 7.99512 8.02246 8.48722 8.64929 9.20301 9.78064 10.40868 11.25181 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.002910 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.377843 B = 9620.299202 C =10130.883147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.011 3.989 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.131 3.869 11 C 0.096 3.904 12 N -0.587 5.587 13 C 0.580 3.420 14 O -0.547 6.547 15 C -0.236 4.236 16 C 0.025 3.975 17 C -0.194 4.194 18 C 0.177 3.823 19 N -0.602 5.602 20 H 0.415 0.585 21 C 0.535 3.465 22 O -0.527 6.527 23 C -0.089 4.089 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.059 4.059 28 C 0.083 3.917 29 C 0.159 3.841 30 H 0.256 0.744 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.022 0.978 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -15.878 -16.519 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.028 4.028 12 N -0.319 5.319 13 C 0.366 3.634 14 O -0.425 6.425 15 C -0.243 4.243 16 C 0.003 3.997 17 C -0.200 4.200 18 C 0.066 3.934 19 N -0.234 5.234 20 H 0.253 0.747 21 C 0.333 3.667 22 O -0.407 6.407 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.097 4.097 28 C -0.041 4.041 29 C 0.033 3.967 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.040 0.960 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.291 -16.038 -15.374 24.484 hybrid contribution -0.034 1.005 0.188 1.023 sum -10.325 -15.033 -15.186 23.732 Atomic orbital electron populations 1.69875 1.05419 1.25745 1.53651 1.25390 0.95536 0.98436 0.99467 0.86335 0.78894 0.83085 0.78174 1.20861 1.21586 1.20777 1.19108 0.90382 0.82952 1.46288 0.91811 1.43887 1.23819 1.09704 1.54086 1.21319 0.98371 0.87429 0.92449 1.22230 0.84063 1.00503 0.95965 1.47989 1.23294 1.11484 1.49109 1.17455 0.82145 0.82445 0.81336 1.90740 1.68755 1.42392 1.40641 1.20921 0.94000 1.14419 0.94997 1.21787 0.98825 0.87861 0.91262 1.18761 0.90625 1.13047 0.97527 1.20320 0.96892 0.92807 0.83331 1.43590 1.11849 1.60588 1.07369 0.74678 1.16714 0.84133 0.79140 0.86671 1.91028 1.85809 1.50243 1.13591 1.21140 0.92857 0.98946 0.99765 1.21268 1.00991 0.94408 0.98543 1.21115 0.95236 1.02124 0.97269 1.21367 0.95710 0.96513 1.02169 1.20567 1.02807 0.96674 0.89668 1.22768 0.97590 0.88168 0.95561 1.21336 0.87811 0.94405 0.93172 0.93353 0.95703 0.91507 0.89980 0.91883 0.84245 0.89953 0.88055 0.91441 0.90722 0.91959 0.91846 0.91583 0.91358 0.90553 0.90397 0.91958 0.91730 0.95955 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 10.81 55.49 0.60 -25.43 16 2 C 0.01 0.30 5.27 -17.43 -0.09 0.21 16 3 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -7.05 9.53 -15.06 -0.14 -7.19 16 8 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.59 -15.28 2.96 -171.77 -0.51 -15.78 16 10 C 0.13 2.99 6.67 -3.59 -0.02 2.96 16 11 C 0.10 1.93 6.60 -3.60 -0.02 1.91 16 12 N -0.59 -11.99 2.94 -173.61 -0.51 -12.50 16 13 C 0.58 12.01 6.69 -12.67 -0.08 11.92 16 14 O -0.55 -12.95 16.52 5.24 0.09 -12.86 16 15 C -0.24 -4.01 3.81 -104.49 -0.40 -4.41 16 16 C 0.02 0.31 9.12 -38.64 -0.35 -0.05 16 17 C -0.19 -1.81 4.95 -105.01 -0.52 -2.33 16 18 C 0.18 1.55 5.93 -81.67 -0.48 1.06 16 19 N -0.60 -6.92 5.23 -10.79 -0.06 -6.98 16 20 H 0.41 3.75 8.58 -40.82 -0.35 3.40 16 21 C 0.54 9.23 7.72 -14.93 -0.12 9.12 16 22 O -0.53 -11.64 17.40 5.02 0.09 -11.55 16 23 C -0.09 -0.44 5.53 -27.46 -0.15 -0.59 16 24 C -0.11 -0.51 5.64 -27.41 -0.15 -0.66 16 25 C -0.12 -0.51 5.25 -28.05 -0.15 -0.66 16 26 C -0.12 -0.65 5.66 -27.36 -0.15 -0.80 16 27 C -0.06 -0.37 5.44 -27.48 -0.15 -0.52 16 28 C 0.08 1.65 6.44 -3.37 -0.02 1.63 16 29 C 0.16 3.92 5.45 -3.37 -0.02 3.90 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.42 7.94 -51.93 -0.41 1.01 16 33 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.14 1.49 7.99 -52.48 -0.42 1.07 16 36 H 0.08 0.30 7.91 -51.93 -0.41 -0.11 16 37 H 0.10 0.39 6.81 -51.93 -0.35 0.04 16 38 H 0.07 0.39 7.85 -51.93 -0.41 -0.02 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.22 7.85 -51.93 -0.41 -0.19 16 42 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.39 6.81 -51.93 -0.35 0.03 16 45 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.06 1.17 6.13 -51.93 -0.32 0.85 16 48 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.11 2.78 6.05 -51.93 -0.31 2.47 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -36.90 382.27 -10.04 -46.94 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.43 Total: 0.46 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: -3.04 Total: 15.51 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.48 Total: -60.70 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.17 Total: -24.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.90 -10.04 -46.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.157 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds