Wall clock time and date at job start Tue Mar 31 2020 06:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00332 * 2 1 4 4 H 1.48490 * 109.47046 * 269.99912 * 3 2 1 5 5 H 1.48501 * 109.47143 * 30.00244 * 3 2 1 6 6 H 1.48501 * 109.47145 * 150.00005 * 3 2 1 7 7 C 1.37881 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00654 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99665 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46889 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99851 * 90.00583 * 10 9 7 12 12 C 1.50702 * 109.46688 * 269.99692 * 11 10 9 13 13 C 1.34510 * 125.79113 * 90.00238 * 12 11 10 14 14 C 1.41386 * 106.84487 * 179.97438 * 13 12 11 15 15 C 1.34516 * 106.83790 * 359.97438 * 14 13 12 16 16 O 1.34301 * 125.79292 * 269.69014 * 12 11 10 17 17 C 1.34777 * 120.00292 * 269.99805 * 10 9 7 18 18 O 1.21584 * 120.00029 * 180.02562 * 17 10 9 19 19 N 1.34776 * 119.99782 * 0.02562 * 17 10 9 20 20 C 1.39943 * 120.00231 * 174.70248 * 19 17 10 21 21 C 1.38891 * 120.06631 * 326.56523 * 20 19 17 22 22 C 1.38095 * 119.92874 * 179.78954 * 21 20 19 23 23 C 1.38302 * 120.07037 * 0.48523 * 22 21 20 24 24 C 1.38267 * 120.13842 * 359.74592 * 23 22 21 25 25 N 1.48015 * 119.96152 * 179.97438 * 24 23 22 26 26 O 1.21802 * 119.99658 * 180.02562 * 25 24 23 27 27 O 1.21795 * 120.00543 * 0.02562 * 25 24 23 28 28 C 1.38136 * 120.06982 * 0.02562 * 24 23 22 29 29 H 0.97000 * 119.99225 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47397 * 60.00277 * 9 7 2 31 31 H 1.08999 * 109.47347 * 300.00365 * 9 7 2 32 32 H 1.08996 * 109.47175 * 29.99584 * 11 10 9 33 33 H 1.08998 * 109.47493 * 150.00083 * 11 10 9 34 34 H 1.08006 * 126.58070 * 359.96119 * 13 12 11 35 35 H 1.07997 * 126.58011 * 179.97438 * 14 13 12 36 36 H 1.07997 * 125.79010 * 180.02562 * 15 14 13 37 37 H 0.97003 * 120.00343 * 354.69845 * 19 17 10 38 38 H 1.07998 * 120.03692 * 359.97438 * 21 20 19 39 39 H 1.07999 * 119.96584 * 180.20353 * 22 21 20 40 40 H 1.07992 * 119.93307 * 179.76412 * 23 22 21 41 41 H 1.07995 * 120.03501 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5755 0.0001 11 6 4.2435 -3.2663 -1.2686 12 6 2.9874 -3.9767 -1.7030 13 6 2.0167 -3.4568 -2.4754 14 6 1.0350 -4.4622 -2.6318 15 6 1.4649 -5.5366 -1.9461 16 8 2.6502 -5.2383 -1.3895 17 6 4.2248 -3.2106 1.1673 18 8 4.6305 -4.3568 1.1673 19 7 4.0003 -2.5752 2.3344 20 6 4.1270 -3.2677 3.5439 21 6 3.7961 -4.6148 3.6123 22 6 3.9264 -5.2965 4.8062 23 6 4.3762 -4.6367 5.9354 24 6 4.7018 -3.2944 5.8717 25 7 5.1824 -2.5920 7.0827 26 8 5.4690 -1.4095 7.0274 27 8 5.2912 -3.1964 8.1345 28 6 4.5782 -2.6081 4.6793 29 1 -0.4849 0.8401 0.0004 30 1 3.8752 -0.6798 0.8895 31 1 3.8745 -0.6809 -0.8905 32 1 4.5313 -2.5398 -2.0285 33 1 5.0454 -3.9930 -1.1385 34 1 1.9917 -2.4621 -2.8954 35 1 0.1163 -4.3828 -3.1940 36 1 0.9467 -6.4803 -1.8608 37 1 3.7508 -1.6377 2.3362 38 1 3.4401 -5.1295 2.7321 39 1 3.6724 -6.3449 4.8594 40 1 4.4736 -5.1710 6.8688 41 1 4.8331 -1.5598 4.6300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074394441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:44 Heat of formation + Delta-G solvation = 31.726929 kcal Electronic energy + Delta-G solvation = -29934.272131 eV Core-core repulsion = 25592.446423 eV Total energy + Delta-G solvation = -4341.825708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16349 -42.02958 -40.62900 -38.88475 -36.55343 -35.74171 -34.84032 -32.77325 -32.44257 -31.89794 -30.84540 -29.50847 -28.11993 -26.54508 -25.56566 -23.12508 -22.87590 -22.35548 -21.21089 -20.52494 -19.81411 -18.98604 -18.62757 -17.87563 -17.51178 -17.41819 -16.80835 -16.55788 -16.39921 -15.59823 -15.52268 -14.86954 -14.75201 -14.48745 -14.13929 -13.90055 -13.59937 -13.20315 -12.82605 -12.55837 -12.48773 -12.30948 -12.23892 -12.13078 -11.96261 -11.55213 -11.42535 -11.25320 -11.20328 -11.13328 -10.89449 -10.59161 -10.46633 -9.98927 -9.80055 -9.52667 -9.32909 -8.88117 -8.51373 -8.17004 -7.90417 -6.34884 -4.38744 -0.13068 0.89344 1.37867 1.41454 2.09981 2.79155 3.04540 3.10322 3.13076 3.17084 3.23391 3.43194 3.65719 4.11309 4.13098 4.39639 4.61230 4.78774 4.92018 4.93840 5.00881 5.13379 5.28296 5.33854 5.53390 5.61524 5.68518 5.74218 5.95977 5.96178 6.05941 6.12138 6.28833 6.31866 6.38952 6.47478 6.55930 6.71376 6.77985 7.02842 7.16141 7.22085 7.65448 7.66030 7.98071 8.24188 8.69344 8.77382 9.21975 10.76985 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.003820 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.783862 B = 7327.563641 C = 9280.752685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.080 3.920 3 Si 0.867 3.133 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.084 0.916 9 C 0.206 3.794 10 N -0.597 5.597 11 C 0.219 3.781 12 C -0.029 4.029 13 C -0.166 4.166 14 C -0.212 4.212 15 C -0.054 4.054 16 O -0.171 6.171 17 C 0.714 3.286 18 O -0.588 6.588 19 N -0.678 5.678 20 C 0.195 3.805 21 C -0.070 4.070 22 C -0.097 4.097 23 C -0.083 4.083 24 C -0.024 4.024 25 N 0.033 4.967 26 O -0.164 6.164 27 O -0.166 6.166 28 C -0.098 4.098 29 H 0.267 0.733 30 H 0.027 0.973 31 H 0.038 0.962 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.194 0.806 37 H 0.421 0.579 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 -7.874 1.712 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.693 3.307 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.102 0.898 9 C 0.086 3.914 10 N -0.330 5.330 11 C 0.096 3.904 12 C -0.081 4.081 13 C -0.186 4.186 14 C -0.232 4.232 15 C -0.122 4.122 16 O -0.066 6.066 17 C 0.417 3.583 18 O -0.467 6.467 19 N -0.326 5.326 20 C 0.096 3.904 21 C -0.091 4.091 22 C -0.116 4.116 23 C -0.103 4.103 24 C -0.107 4.107 25 N 0.551 4.449 26 O -0.379 6.379 27 O -0.381 6.381 28 C -0.120 4.120 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.210 0.790 37 H 0.261 0.739 38 H 0.174 0.826 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.734 -9.010 1.174 11.309 hybrid contribution -0.285 1.939 0.115 1.963 sum 6.449 -7.071 1.289 9.656 Atomic orbital electron populations 1.69884 1.06201 1.27237 1.48599 1.24876 0.94706 0.98675 0.94237 0.87014 0.80315 0.84318 0.79032 1.19805 1.20776 1.19020 1.21335 0.88460 0.95272 1.53024 0.89842 1.19900 0.96642 0.77304 0.97596 1.47206 1.67032 1.15738 1.02999 1.19558 0.91000 0.94876 0.85014 1.22749 1.00560 0.83277 1.01484 1.21559 0.93982 1.00334 1.02732 1.21785 1.01752 0.94143 1.05474 1.23859 0.86998 1.01004 1.00350 1.84027 1.33432 1.29380 1.59806 1.15685 0.78156 0.84057 0.80430 1.90881 1.53196 1.16386 1.86273 1.42842 1.71570 1.15613 1.02621 1.17222 0.96135 0.92054 0.84994 1.21795 0.94635 0.93388 0.99259 1.21063 0.98938 1.00808 0.90779 1.20954 0.97229 0.91277 1.00887 1.20675 1.11008 0.93685 0.85373 1.43609 0.97944 1.00942 1.02387 1.94543 1.52581 0.98954 1.91869 1.94508 1.57395 1.68103 1.18061 1.20592 0.99071 1.02230 0.90120 0.92258 0.95555 0.94435 0.87494 0.88950 0.83453 0.84107 0.78958 0.73862 0.82567 0.83380 0.83204 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 13.96 55.43 0.77 -23.35 16 2 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 18.21 27.47 -169.99 -4.67 13.54 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.16 6.54 56.52 0.37 -4.79 16 7 C -0.54 -12.82 9.69 -34.44 -0.33 -13.15 16 8 H 0.08 2.31 7.89 -52.49 -0.41 1.89 16 9 C 0.21 3.96 4.08 -5.19 -0.02 3.94 16 10 N -0.60 -10.71 2.44 -182.18 -0.44 -11.15 16 11 C 0.22 3.50 5.98 -5.19 -0.03 3.47 16 12 C -0.03 -0.52 6.90 -35.63 -0.25 -0.77 16 13 C -0.17 -2.98 10.40 -39.70 -0.41 -3.39 16 14 C -0.21 -3.50 10.91 -39.70 -0.43 -3.93 16 15 C -0.05 -0.84 12.09 29.42 0.36 -0.48 16 16 O -0.17 -3.09 10.65 5.72 0.06 -3.03 16 17 C 0.71 13.06 8.01 -86.92 -0.70 12.36 16 18 O -0.59 -11.51 13.62 5.29 0.07 -11.43 16 19 N -0.68 -11.14 5.22 -14.22 -0.07 -11.21 16 20 C 0.19 2.90 6.28 -83.69 -0.53 2.37 16 21 C -0.07 -0.98 8.65 -39.39 -0.34 -1.32 16 22 C -0.10 -1.06 10.04 -39.61 -0.40 -1.45 16 23 C -0.08 -0.94 9.55 -39.55 -0.38 -1.32 16 24 C -0.02 -0.32 6.85 -79.98 -0.55 -0.87 16 25 N 0.03 0.49 4.45 33.95 0.15 0.64 16 26 O -0.16 -2.58 18.45 -29.46 -0.54 -3.12 16 27 O -0.17 -2.47 18.44 -29.46 -0.54 -3.01 16 28 C -0.10 -1.34 9.47 -39.40 -0.37 -1.71 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.03 0.49 5.35 -51.93 -0.28 0.21 16 31 H 0.04 0.69 7.32 -51.93 -0.38 0.31 16 32 H 0.11 1.41 7.89 -51.93 -0.41 1.00 16 33 H 0.09 1.41 7.42 -51.93 -0.39 1.02 16 34 H 0.15 2.64 8.06 -52.48 -0.42 2.22 16 35 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.42 6.75 6.51 -40.82 -0.27 6.49 16 38 H 0.16 2.43 6.43 -52.49 -0.34 2.09 16 39 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.15 1.39 7.60 -52.49 -0.40 0.99 16 41 H 0.15 1.95 7.61 -52.49 -0.40 1.55 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -30.05 364.40 -8.33 -38.39 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -4.13 Total: 12.62 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -4.48 Total: -4.37 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.41 Total: -45.08 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.95 Total: -20.59 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -4.67 Total: 13.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.05 -8.33 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074394441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.113 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds