Wall clock time and date at job start Tue Mar 31 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47236 * 239.99940 * 3 2 1 5 5 H 1.48498 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46748 * 120.00074 * 3 2 1 7 7 C 1.38957 * 119.99384 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99719 * 199.28860 * 7 2 1 9 9 N 1.37092 * 120.00418 * 19.28421 * 7 2 1 10 10 C 1.34783 * 119.99588 * 42.43679 * 9 7 2 11 11 O 1.21290 * 120.00033 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99636 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.46962 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.50622 * 304.99680 * 13 12 10 15 15 C 1.53097 * 109.50547 * 184.91101 * 13 12 10 16 16 N 1.47026 * 109.25528 * 183.26232 * 15 13 12 17 17 C 1.46892 * 111.00065 * 182.35104 * 16 15 13 18 18 C 1.50701 * 109.47073 * 170.27139 * 17 16 15 19 19 C 1.38231 * 119.99921 * 269.72323 * 18 17 16 20 20 C 1.38239 * 120.00109 * 179.78907 * 19 18 17 21 21 C 1.38233 * 119.99531 * 0.46706 * 20 19 18 22 22 C 1.38237 * 120.00423 * 359.76714 * 21 20 19 23 23 C 1.38236 * 119.99813 * 0.02562 * 22 21 20 24 24 C 1.47013 * 110.78884 * 58.54575 * 16 15 13 25 25 C 1.53095 * 109.26041 * 301.41133 * 24 16 15 26 26 O 1.43010 * 109.25843 * 56.85031 * 25 24 16 27 27 C 1.46497 * 120.00461 * 222.43416 * 9 7 2 28 28 C 1.53002 * 117.49908 * 3.39195 * 27 9 7 29 29 C 1.53004 * 117.49513 * 294.73611 * 27 9 7 30 30 H 0.97007 * 119.99690 * 354.74047 * 1 2 3 31 31 H 1.09004 * 109.47326 * 299.99274 * 12 10 9 32 32 H 1.08994 * 109.47926 * 59.99690 * 12 10 9 33 33 H 1.09001 * 109.50737 * 303.14510 * 15 13 12 34 34 H 1.08999 * 109.50861 * 63.28488 * 15 13 12 35 35 H 1.08999 * 109.47027 * 290.27240 * 17 16 15 36 36 H 1.09007 * 109.47049 * 50.27115 * 17 16 15 37 37 H 1.07999 * 120.00043 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.00319 * 180.25052 * 20 19 18 39 39 H 1.08006 * 120.00059 * 179.79183 * 21 20 19 40 40 H 1.07995 * 120.00377 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.00286 * 179.97438 * 23 22 21 42 42 H 1.09006 * 109.50733 * 181.47203 * 24 16 15 43 43 H 1.09001 * 109.54343 * 61.37019 * 24 16 15 44 44 H 1.08996 * 109.50829 * 296.91259 * 25 24 16 45 45 H 1.09002 * 109.53982 * 176.80424 * 25 24 16 46 46 H 1.08992 * 115.55133 * 149.06322 * 27 9 7 47 47 H 1.09001 * 117.49299 * 0.02562 * 28 27 9 48 48 H 1.08996 * 117.50141 * 145.01897 * 28 27 9 49 49 H 1.09004 * 117.49760 * 214.97914 * 29 27 9 50 50 H 1.08991 * 117.50378 * 359.97007 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6962 1.2126 7 6 2.0088 -1.2035 -0.0005 8 1 3.0433 -1.2299 0.3084 9 7 1.3809 -2.3572 -0.3931 10 6 0.5725 -2.3510 -1.4716 11 8 0.4002 -1.3246 -2.0944 12 6 -0.1180 -3.6191 -1.9028 13 6 -0.9697 -3.3397 -3.1428 14 1 -1.6573 -2.5199 -2.9349 15 6 -1.7663 -4.5947 -3.5092 16 7 -2.5222 -4.3455 -4.7454 17 6 -3.3455 -5.5084 -5.1026 18 6 -4.2786 -5.1371 -6.2262 19 6 -5.5343 -4.6328 -5.9437 20 6 -6.3887 -4.2881 -6.9744 21 6 -5.9909 -4.4569 -8.2874 22 6 -4.7371 -4.9658 -8.5700 23 6 -3.8811 -5.3064 -7.5393 24 6 -1.6175 -3.9824 -5.8459 25 6 -0.8231 -2.7333 -5.4554 26 8 -0.1190 -2.9841 -4.2362 27 6 1.5887 -3.5968 0.3594 28 6 2.4538 -3.5220 1.6192 29 6 2.9961 -4.1972 0.3570 30 1 -0.4850 0.8366 0.0770 31 1 0.6287 -4.3777 -2.1379 32 1 -0.7579 -3.9769 -1.0962 33 1 -1.0814 -5.4283 -3.6641 34 1 -2.4575 -4.8358 -2.7016 35 1 -2.6997 -6.3264 -5.4218 36 1 -3.9272 -5.8217 -4.2356 37 1 -5.8464 -4.5044 -4.9178 38 1 -7.3682 -3.8903 -6.7537 39 1 -6.6597 -4.1908 -9.0927 40 1 -4.4265 -5.0981 -9.5958 41 1 -2.9017 -5.7044 -7.7599 42 1 -2.2005 -3.7771 -6.7438 43 1 -0.9296 -4.8056 -6.0391 44 1 -1.5069 -1.8961 -5.3153 45 1 -0.1105 -2.4930 -6.2445 46 1 0.7465 -4.2886 0.3677 47 1 2.8679 -2.5502 1.8882 48 1 2.1808 -4.1647 2.4561 49 1 3.0796 -5.2840 0.3641 50 1 3.7671 -3.6702 -0.2048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074724943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:10 Heat of formation + Delta-G solvation = -0.441594 kcal Electronic energy + Delta-G solvation = -30471.696755 eV Core-core repulsion = 26465.568215 eV Total energy + Delta-G solvation = -4006.128539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.97945 -39.03778 -38.21140 -36.07650 -35.49023 -32.90574 -32.21241 -31.66797 -31.08000 -30.74343 -28.66098 -26.99538 -24.82336 -24.17551 -22.91915 -22.48465 -21.65302 -21.19034 -20.91351 -20.13848 -18.99686 -16.98770 -16.45308 -16.19651 -16.04486 -15.90275 -15.49318 -15.46849 -14.70275 -14.69458 -14.50178 -14.27386 -13.94881 -13.76996 -13.60285 -13.49767 -13.24395 -12.95802 -12.67840 -12.57536 -12.13931 -11.91287 -11.71758 -11.46881 -11.39878 -11.18969 -11.05300 -10.93260 -10.87104 -10.77381 -10.71448 -10.36239 -10.15671 -10.06904 -9.89140 -9.67359 -9.19658 -9.05913 -8.97594 -8.61443 -8.34329 -7.83022 -6.90019 -6.01187 -3.73647 1.14222 1.23019 3.36307 3.43592 3.47440 3.48164 3.98511 4.15864 4.32115 4.36565 4.54576 4.64883 4.81518 4.84896 4.87643 4.92369 5.04632 5.11461 5.14596 5.24986 5.31209 5.36759 5.41451 5.45383 5.52627 5.53494 5.62505 5.66161 5.76856 5.81232 5.81342 5.83613 5.86683 5.95116 6.01210 6.09904 6.25602 6.26504 6.27976 6.32890 6.34727 6.44572 6.53967 6.60187 6.80117 6.82211 6.93328 6.96021 6.98468 7.70296 7.72312 8.37274 9.17817 9.30700 9.79614 10.45625 11.08202 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.002514 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.103879 B =11135.645527 C =11954.721626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.347 4.347 8 H 0.074 0.926 9 N -0.434 5.434 10 C 0.487 3.513 11 O -0.517 6.517 12 C -0.127 4.127 13 C 0.118 3.882 14 H 0.074 0.926 15 C 0.025 3.975 16 N -0.530 5.530 17 C 0.092 3.908 18 C -0.075 4.075 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.115 4.115 24 C 0.017 3.983 25 C 0.066 3.934 26 O -0.361 6.361 27 C 0.079 3.921 28 C -0.176 4.176 29 C -0.209 4.209 30 H 0.263 0.737 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 -13.885 -11.336 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.474 4.474 8 H 0.092 0.908 9 N -0.156 5.156 10 C 0.274 3.726 11 O -0.392 6.392 12 C -0.168 4.168 13 C 0.059 3.941 14 H 0.092 0.908 15 C -0.103 4.103 16 N -0.254 5.254 17 C -0.035 4.035 18 C -0.075 4.075 19 C -0.116 4.116 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.134 4.134 24 C -0.111 4.111 25 C -0.012 4.012 26 O -0.279 6.279 27 C -0.028 4.028 28 C -0.213 4.213 29 C -0.248 4.248 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.700 -12.785 -11.631 19.820 hybrid contribution 0.579 -0.037 -0.074 0.585 sum -9.121 -12.821 -11.705 19.611 Atomic orbital electron populations 1.69821 1.06503 1.27301 1.43064 1.25170 0.94769 0.99180 0.94520 0.86299 0.79297 0.82184 0.78335 1.20045 1.21298 1.20563 1.18757 0.94841 0.84200 1.49608 0.90788 1.42787 1.44315 1.05910 1.22612 1.19509 0.83098 0.88761 0.81196 1.90544 1.61838 1.33237 1.53621 1.21639 0.99612 0.99673 0.95915 1.21771 0.91392 0.94471 0.86448 0.90797 1.22901 0.96640 0.98530 0.92240 1.62171 1.23672 1.35794 1.03809 1.21067 0.94557 0.91417 0.96456 1.19757 0.94775 0.98994 0.93974 1.21059 0.93418 0.97700 0.99442 1.21168 0.99788 1.00118 0.92864 1.21144 0.96509 0.99817 0.96663 1.21103 0.94311 0.99669 0.98964 1.21072 0.99447 1.00490 0.92352 1.22910 0.94776 0.98675 0.94759 1.22520 0.95561 0.95376 0.87693 1.88107 1.32718 1.89233 1.17819 1.21643 0.92222 0.91336 0.97583 1.23069 1.04751 1.02550 0.90972 1.23321 1.00108 0.98573 1.02842 0.92731 0.90216 0.89538 0.94083 0.89719 0.93962 0.89748 0.85878 0.86111 0.86302 0.86227 0.86405 0.89780 0.94326 0.92514 0.89037 0.88202 0.87551 0.89917 0.89944 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.04 11.64 55.50 0.65 -24.39 16 2 C 0.07 2.12 4.35 -17.47 -0.08 2.04 16 3 Si 0.91 22.53 29.60 -169.99 -5.03 17.50 16 4 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.35 -9.67 8.00 -14.93 -0.12 -9.79 16 8 H 0.07 2.00 7.18 -52.49 -0.38 1.63 16 9 N -0.43 -11.04 2.85 -107.73 -0.31 -11.35 16 10 C 0.49 12.54 6.85 -10.98 -0.08 12.46 16 11 O -0.52 -15.47 13.04 -8.72 -0.11 -15.59 16 12 C -0.13 -2.47 4.03 -27.88 -0.11 -2.58 16 13 C 0.12 2.18 2.35 -26.68 -0.06 2.12 16 14 H 0.07 1.59 7.96 -51.93 -0.41 1.17 16 15 C 0.02 0.35 4.93 -3.71 -0.02 0.33 16 16 N -0.53 -7.04 4.72 -235.74 -1.11 -8.15 16 17 C 0.09 0.99 5.12 -4.98 -0.03 0.96 16 18 C -0.07 -0.79 4.89 -104.62 -0.51 -1.30 16 19 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.12 7.93 -39.58 -0.31 -1.43 16 24 C 0.02 0.22 5.27 -3.71 -0.02 0.20 16 25 C 0.07 1.05 7.01 37.21 0.26 1.31 16 26 O -0.36 -7.19 9.71 -49.50 -0.48 -7.67 16 27 C 0.08 1.59 5.87 -67.93 -0.40 1.19 16 28 C -0.18 -3.21 9.80 -26.69 -0.26 -3.47 16 29 C -0.21 -3.64 10.36 -26.69 -0.28 -3.92 16 30 H 0.26 7.61 8.32 -40.82 -0.34 7.27 16 31 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 32 H 0.09 1.49 7.57 -51.93 -0.39 1.09 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 35 H 0.04 0.42 8.07 -51.93 -0.42 0.01 16 36 H 0.08 0.82 7.99 -51.93 -0.41 0.41 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 1.01 8.00 -52.49 -0.42 0.59 16 42 H 0.08 1.01 6.01 -51.93 -0.31 0.69 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.10 1.77 6.95 -51.93 -0.36 1.40 16 47 H 0.11 2.16 6.68 -51.93 -0.35 1.82 16 48 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 50 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -34.50 399.62 -12.05 -46.55 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.08 Total: 4.83 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.59 Total: -7.74 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.77 Total: -43.89 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.59 Total: -23.26 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.50 -12.05 -46.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074724943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.110 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds