Wall clock time and date at job start Tue Mar 31 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00164 * 2 1 4 4 H 1.48496 * 109.47690 * 270.00768 * 3 2 1 5 5 H 1.48502 * 109.47105 * 30.00831 * 3 2 1 6 6 H 1.48499 * 109.47080 * 150.00118 * 3 2 1 7 7 C 1.38951 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99757 * 197.98845 * 7 2 1 9 9 N 1.37098 * 120.00201 * 17.98117 * 7 2 1 10 10 C 1.34776 * 119.99706 * 44.49163 * 9 7 2 11 11 O 1.21291 * 120.00422 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99529 * 180.02562 * 10 9 7 13 13 C 1.52996 * 109.46911 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.51277 * 55.08244 * 13 12 10 15 15 C 1.53096 * 109.54208 * 175.19388 * 13 12 10 16 16 N 1.47018 * 109.25811 * 176.80016 * 15 13 12 17 17 C 1.46907 * 110.99909 * 177.60538 * 16 15 13 18 18 C 1.50705 * 109.46805 * 189.68299 * 17 16 15 19 19 C 1.38233 * 119.99710 * 269.72636 * 18 17 16 20 20 C 1.38231 * 119.99721 * 179.76904 * 19 18 17 21 21 C 1.38246 * 119.99968 * 0.50757 * 20 19 18 22 22 C 1.38235 * 119.99729 * 359.74544 * 21 20 19 23 23 C 1.38232 * 119.99663 * 90.00372 * 18 17 16 24 24 C 1.47015 * 110.75544 * 301.38399 * 16 15 13 25 25 C 1.53096 * 109.25294 * 58.61563 * 24 16 15 26 26 O 1.43009 * 109.26036 * 303.14839 * 25 24 16 27 27 C 1.46503 * 120.00096 * 224.49015 * 9 7 2 28 28 C 1.53003 * 117.49740 * 3.27447 * 27 9 7 29 29 C 1.53003 * 117.49741 * 294.61489 * 27 9 7 30 30 H 0.97003 * 119.99630 * 354.95666 * 1 2 3 31 31 H 1.09001 * 109.47633 * 59.99680 * 12 10 9 32 32 H 1.09002 * 109.46983 * 299.99934 * 12 10 9 33 33 H 1.09003 * 109.51024 * 56.87199 * 15 13 12 34 34 H 1.08996 * 109.50947 * 296.73839 * 15 13 12 35 35 H 1.09002 * 109.46801 * 69.68759 * 17 16 15 36 36 H 1.08992 * 109.47258 * 309.68408 * 17 16 15 37 37 H 1.08002 * 120.00281 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.00595 * 180.23583 * 20 19 18 39 39 H 1.08003 * 119.99726 * 179.72199 * 21 20 19 40 40 H 1.07997 * 119.99713 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.00134 * 0.02562 * 23 18 17 42 42 H 1.08999 * 109.50364 * 178.55039 * 24 16 15 43 43 H 1.08993 * 109.50513 * 298.68297 * 24 16 15 44 44 H 1.08995 * 109.50885 * 63.09154 * 25 24 16 45 45 H 1.09003 * 109.50187 * 183.21448 * 25 24 16 46 46 H 1.08992 * 115.54863 * 148.94009 * 27 9 7 47 47 H 1.09000 * 117.49798 * 359.97438 * 28 27 9 48 48 H 1.08997 * 117.50114 * 145.01932 * 28 27 9 49 49 H 1.09000 * 117.49709 * 214.97597 * 29 27 9 50 50 H 1.08996 * 117.49837 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0466 -1.4000 5 1 1.4458 2.6526 0.7002 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0493 -1.2264 0.2883 9 7 1.3736 -2.3615 -0.3676 10 6 0.5766 -2.3776 -1.4543 11 8 0.4209 -1.3674 -2.1073 12 6 -0.1222 -3.6505 -1.8574 13 6 -0.9570 -3.3979 -3.1144 14 1 -0.3203 -2.9866 -3.8977 15 6 -1.5715 -4.7155 -3.5943 16 7 -2.4334 -4.4537 -4.7562 17 6 -2.9994 -5.7024 -5.2839 18 6 -3.6770 -5.4292 -6.6021 19 6 -5.0158 -5.0867 -6.6330 20 6 -5.6362 -4.8315 -7.8416 21 6 -4.9202 -4.9290 -9.0202 22 6 -3.5826 -5.2766 -8.9896 23 6 -2.9610 -5.5268 -7.7805 24 6 -3.4960 -3.4978 -4.4118 25 6 -2.8621 -2.1925 -3.9237 26 8 -2.0039 -2.4710 -2.8142 27 6 1.5611 -3.5816 0.4214 28 6 2.4160 -3.4805 1.6863 29 6 2.9616 -4.1971 0.4486 30 1 -0.4850 0.8368 0.0739 31 1 -0.7739 -3.9794 -1.0479 32 1 0.6193 -4.4225 -2.0632 33 1 -2.1653 -5.1537 -2.7922 34 1 -0.7771 -5.4054 -3.8786 35 1 -3.7276 -6.0988 -4.5763 36 1 -2.2011 -6.4300 -5.4297 37 1 -5.5762 -5.0145 -5.7125 38 1 -6.6813 -4.5601 -7.8656 39 1 -5.4061 -4.7339 -9.9648 40 1 -3.0234 -5.3532 -9.9103 41 1 -1.9162 -5.7991 -7.7566 42 1 -4.1062 -3.2990 -5.2928 43 1 -4.1205 -3.9166 -3.6227 44 1 -2.2809 -1.7462 -4.7305 45 1 -3.6457 -1.5013 -3.6133 46 1 0.7111 -4.2636 0.4417 47 1 2.8392 -2.5063 1.9312 48 1 2.1287 -4.0963 2.5386 49 1 3.0330 -5.2840 0.4870 50 1 3.7433 -3.6944 -0.1210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074724946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:15 Heat of formation + Delta-G solvation = -0.693301 kcal Electronic energy + Delta-G solvation = -30495.408875 eV Core-core repulsion = 26489.269421 eV Total energy + Delta-G solvation = -4006.139454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.96735 -39.02460 -38.19692 -36.06875 -35.45936 -32.89256 -32.20645 -31.66015 -31.08229 -30.72724 -28.63343 -26.99270 -24.81151 -24.14412 -22.91204 -22.47301 -21.64748 -21.18710 -20.90775 -20.12681 -18.97107 -16.98528 -16.41202 -16.16346 -16.04418 -15.95252 -15.49280 -15.43564 -14.71078 -14.61788 -14.45140 -14.26266 -14.00663 -13.75679 -13.59737 -13.50065 -13.16319 -12.99281 -12.67511 -12.52699 -12.14141 -11.89508 -11.76908 -11.47890 -11.29258 -11.19363 -11.09942 -10.88470 -10.86862 -10.77765 -10.69776 -10.40979 -10.09981 -10.04429 -9.86774 -9.65659 -9.15975 -9.04698 -8.97677 -8.58442 -8.33728 -7.83864 -6.89209 -5.97360 -3.74281 1.14001 1.22728 3.37201 3.43742 3.47399 3.47851 3.99010 4.17985 4.32221 4.39997 4.54660 4.64941 4.81392 4.85787 4.87839 4.92352 5.05977 5.13047 5.15557 5.25818 5.31030 5.39556 5.42725 5.45739 5.53145 5.54389 5.63652 5.67207 5.77587 5.80056 5.81132 5.84754 5.86776 5.98842 6.06678 6.16067 6.20283 6.26424 6.26590 6.32450 6.34534 6.44247 6.55183 6.58996 6.79841 6.81945 6.93871 6.96512 6.99844 7.72468 7.79584 8.40008 9.19807 9.31357 9.80137 10.45851 11.10675 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.002517 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.712234 B =11120.914521 C =12045.740244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.350 4.350 8 H 0.074 0.926 9 N -0.434 5.434 10 C 0.490 3.510 11 O -0.519 6.519 12 C -0.129 4.129 13 C 0.118 3.882 14 H 0.069 0.931 15 C 0.024 3.976 16 N -0.530 5.530 17 C 0.092 3.908 18 C -0.074 4.074 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.098 4.098 24 C 0.016 3.984 25 C 0.066 3.934 26 O -0.351 6.351 27 C 0.078 3.922 28 C -0.175 4.175 29 C -0.210 4.210 30 H 0.262 0.738 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 -14.260 -11.606 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.137 4.137 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.477 4.477 8 H 0.092 0.908 9 N -0.156 5.156 10 C 0.277 3.723 11 O -0.395 6.395 12 C -0.170 4.170 13 C 0.059 3.941 14 H 0.087 0.913 15 C -0.104 4.104 16 N -0.254 5.254 17 C -0.035 4.035 18 C -0.075 4.075 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.011 4.011 26 O -0.269 6.269 27 C -0.028 4.028 28 C -0.213 4.213 29 C -0.249 4.249 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.118 0.882 47 H 0.125 0.875 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.674 -13.284 -12.190 20.007 hybrid contribution -0.220 0.215 0.519 0.603 sum -8.894 -13.069 -11.671 19.650 Atomic orbital electron populations 1.69852 1.06323 1.27121 1.42607 1.25237 0.94795 0.99177 0.94497 0.86274 0.79249 0.82602 0.78214 1.20430 1.21426 1.20063 1.18775 0.94184 0.83874 1.50878 0.90808 1.42778 1.44615 1.06754 1.21436 1.19559 0.82546 0.88664 0.81557 1.90540 1.61558 1.34418 1.52958 1.21656 0.98654 0.99376 0.97307 1.21743 0.88706 0.86832 0.96835 0.91260 1.22907 0.96981 0.99256 0.91255 1.62201 1.20398 1.10960 1.31888 1.21070 0.97972 0.91912 0.92573 1.19758 0.93600 0.99297 0.94829 1.21082 0.94497 0.99776 0.97970 1.21111 0.99872 1.00474 0.92560 1.21145 0.94663 1.00204 0.98125 1.21161 0.94999 0.99907 0.97914 1.21044 0.99680 0.99132 0.91796 1.22924 0.93615 0.94614 1.00011 1.22514 0.93791 0.94482 0.90354 1.88220 1.41715 1.63268 1.33709 1.21668 0.92250 0.91790 0.97129 1.23058 1.04737 1.02411 0.91086 1.23326 1.00055 0.98291 1.03224 0.92758 0.90188 0.89508 0.94032 0.89809 0.93947 0.89786 0.86376 0.86211 0.86302 0.86137 0.85917 0.89823 0.94282 0.92695 0.89016 0.88238 0.87533 0.89959 0.89955 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.15 11.74 55.50 0.65 -24.50 16 2 C 0.07 2.13 4.39 -17.47 -0.08 2.05 16 3 Si 0.91 22.48 29.59 -169.99 -5.03 17.45 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.35 -9.74 7.91 -14.93 -0.12 -9.85 16 8 H 0.07 2.00 7.27 -52.48 -0.38 1.62 16 9 N -0.43 -11.02 2.83 -107.72 -0.31 -11.32 16 10 C 0.49 12.56 6.85 -10.98 -0.08 12.48 16 11 O -0.52 -15.50 13.19 -8.85 -0.12 -15.61 16 12 C -0.13 -2.49 4.04 -27.88 -0.11 -2.60 16 13 C 0.12 2.17 2.35 -26.68 -0.06 2.11 16 14 H 0.07 1.41 7.96 -51.93 -0.41 1.00 16 15 C 0.02 0.33 4.93 -3.71 -0.02 0.32 16 16 N -0.53 -7.02 4.72 -235.75 -1.11 -8.13 16 17 C 0.09 0.98 5.12 -4.97 -0.03 0.95 16 18 C -0.07 -0.78 4.88 -104.62 -0.51 -1.29 16 19 C -0.11 -1.12 7.94 -39.59 -0.31 -1.44 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 21 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 24 C 0.02 0.22 5.28 -3.71 -0.02 0.20 16 25 C 0.07 1.10 7.01 37.21 0.26 1.36 16 26 O -0.35 -7.36 9.70 -49.63 -0.48 -7.85 16 27 C 0.08 1.58 5.87 -67.93 -0.40 1.18 16 28 C -0.18 -3.21 9.80 -26.69 -0.26 -3.48 16 29 C -0.21 -3.59 10.36 -26.69 -0.28 -3.87 16 30 H 0.26 7.70 8.32 -40.82 -0.34 7.36 16 31 H 0.08 1.50 7.57 -51.93 -0.39 1.10 16 32 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 35 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 37 H 0.12 1.04 8.03 -52.49 -0.42 0.62 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.08 1.03 6.03 -51.93 -0.31 0.71 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 46 H 0.10 1.79 6.96 -51.93 -0.36 1.43 16 47 H 0.11 2.18 6.73 -51.93 -0.35 1.83 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 399.99 15.07 6.03 6.03 Total: -1.00 -34.85 399.99 -12.05 -46.89 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.09 Total: 4.75 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.59 Total: -7.71 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.77 Total: -43.95 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.60 Total: -23.46 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.85 -12.05 -46.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074724946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.201 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds