Wall clock time and date at job start Tue Mar 31 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00164 * 2 1 4 4 H 1.48496 * 109.47690 * 270.00768 * 3 2 1 5 5 H 1.48502 * 109.47105 * 30.00831 * 3 2 1 6 6 H 1.48499 * 109.47080 * 150.00118 * 3 2 1 7 7 C 1.38951 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99757 * 197.98845 * 7 2 1 9 9 N 1.37098 * 120.00201 * 17.98117 * 7 2 1 10 10 C 1.34776 * 119.99706 * 44.49163 * 9 7 2 11 11 O 1.21291 * 120.00422 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99529 * 180.02562 * 10 9 7 13 13 C 1.52996 * 109.46911 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.51277 * 55.08244 * 13 12 10 15 15 C 1.53096 * 109.54208 * 175.19388 * 13 12 10 16 16 N 1.47018 * 109.25811 * 176.80016 * 15 13 12 17 17 C 1.46907 * 110.99909 * 177.60538 * 16 15 13 18 18 C 1.50705 * 109.46805 * 189.68299 * 17 16 15 19 19 C 1.38233 * 119.99710 * 269.72636 * 18 17 16 20 20 C 1.38231 * 119.99721 * 179.76904 * 19 18 17 21 21 C 1.38246 * 119.99968 * 0.50757 * 20 19 18 22 22 C 1.38235 * 119.99729 * 359.74544 * 21 20 19 23 23 C 1.38232 * 119.99663 * 90.00372 * 18 17 16 24 24 C 1.47015 * 110.75544 * 301.38399 * 16 15 13 25 25 C 1.53096 * 109.25294 * 58.61563 * 24 16 15 26 26 O 1.43009 * 109.26036 * 303.14839 * 25 24 16 27 27 C 1.46503 * 120.00096 * 224.49015 * 9 7 2 28 28 C 1.53003 * 117.49740 * 3.27447 * 27 9 7 29 29 C 1.53003 * 117.49741 * 294.61489 * 27 9 7 30 30 H 0.97003 * 119.99630 * 354.95666 * 1 2 3 31 31 H 1.09001 * 109.47633 * 59.99680 * 12 10 9 32 32 H 1.09002 * 109.46983 * 299.99934 * 12 10 9 33 33 H 1.09003 * 109.51024 * 56.87199 * 15 13 12 34 34 H 1.08996 * 109.50947 * 296.73839 * 15 13 12 35 35 H 1.09002 * 109.46801 * 69.68759 * 17 16 15 36 36 H 1.08992 * 109.47258 * 309.68408 * 17 16 15 37 37 H 1.08002 * 120.00281 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.00595 * 180.23583 * 20 19 18 39 39 H 1.08003 * 119.99726 * 179.72199 * 21 20 19 40 40 H 1.07997 * 119.99713 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.00134 * 0.02562 * 23 18 17 42 42 H 1.08999 * 109.50364 * 178.55039 * 24 16 15 43 43 H 1.08993 * 109.50513 * 298.68297 * 24 16 15 44 44 H 1.08995 * 109.50885 * 63.09154 * 25 24 16 45 45 H 1.09003 * 109.50187 * 183.21448 * 25 24 16 46 46 H 1.08992 * 115.54863 * 148.94009 * 27 9 7 47 47 H 1.09000 * 117.49798 * 359.97438 * 28 27 9 48 48 H 1.08997 * 117.50114 * 145.01932 * 28 27 9 49 49 H 1.09000 * 117.49709 * 214.97597 * 29 27 9 50 50 H 1.08996 * 117.49837 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0466 -1.4000 5 1 1.4458 2.6526 0.7002 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0493 -1.2264 0.2883 9 7 1.3736 -2.3615 -0.3676 10 6 0.5766 -2.3776 -1.4543 11 8 0.4209 -1.3674 -2.1073 12 6 -0.1222 -3.6505 -1.8574 13 6 -0.9570 -3.3979 -3.1144 14 1 -0.3203 -2.9866 -3.8977 15 6 -1.5715 -4.7155 -3.5943 16 7 -2.4334 -4.4537 -4.7562 17 6 -2.9994 -5.7024 -5.2839 18 6 -3.6770 -5.4292 -6.6021 19 6 -5.0158 -5.0867 -6.6330 20 6 -5.6362 -4.8315 -7.8416 21 6 -4.9202 -4.9290 -9.0202 22 6 -3.5826 -5.2766 -8.9896 23 6 -2.9610 -5.5268 -7.7805 24 6 -3.4960 -3.4978 -4.4118 25 6 -2.8621 -2.1925 -3.9237 26 8 -2.0039 -2.4710 -2.8142 27 6 1.5611 -3.5816 0.4214 28 6 2.4160 -3.4805 1.6863 29 6 2.9616 -4.1971 0.4486 30 1 -0.4850 0.8368 0.0739 31 1 -0.7739 -3.9794 -1.0479 32 1 0.6193 -4.4225 -2.0632 33 1 -2.1653 -5.1537 -2.7922 34 1 -0.7771 -5.4054 -3.8786 35 1 -3.7276 -6.0988 -4.5763 36 1 -2.2011 -6.4300 -5.4297 37 1 -5.5762 -5.0145 -5.7125 38 1 -6.6813 -4.5601 -7.8656 39 1 -5.4061 -4.7339 -9.9648 40 1 -3.0234 -5.3532 -9.9103 41 1 -1.9162 -5.7991 -7.7566 42 1 -4.1062 -3.2990 -5.2928 43 1 -4.1205 -3.9166 -3.6227 44 1 -2.2809 -1.7462 -4.7305 45 1 -3.6457 -1.5013 -3.6133 46 1 0.7111 -4.2636 0.4417 47 1 2.8392 -2.5063 1.9312 48 1 2.1287 -4.0963 2.5386 49 1 3.0330 -5.2840 0.4870 50 1 3.7433 -3.6944 -0.1210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074724946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:14 Heat of formation + Delta-G solvation = -22.028073 kcal Electronic energy + Delta-G solvation = -30496.334020 eV Core-core repulsion = 26489.269421 eV Total energy + Delta-G solvation = -4007.064599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.06490 -40.27739 -39.63485 -37.68424 -36.69628 -34.80451 -33.72838 -32.69875 -32.50234 -31.75310 -29.95626 -28.23034 -26.57974 -25.26349 -24.09201 -23.35234 -23.05157 -22.68319 -21.93647 -21.34411 -20.79468 -18.23838 -17.75589 -17.72445 -17.41804 -17.27148 -16.65934 -16.38213 -16.24409 -16.06306 -15.61876 -15.54931 -15.48662 -15.18643 -14.85380 -14.76146 -14.27575 -14.23966 -13.82360 -13.65272 -13.43135 -13.24410 -13.02552 -12.97425 -12.82076 -12.76119 -12.43816 -12.36320 -12.18998 -12.15544 -12.00247 -11.87222 -11.77531 -11.60102 -11.43394 -11.14433 -10.67804 -10.48019 -9.83074 -9.77554 -9.70410 -9.32810 -8.88254 -8.12550 -5.91624 0.43707 0.54121 1.34873 1.43613 1.47978 2.30159 2.50080 2.64431 2.93826 3.07826 3.17061 3.23206 3.43053 3.73391 3.86486 3.92709 4.00066 4.08491 4.15227 4.17397 4.19447 4.20897 4.30631 4.32122 4.35181 4.41674 4.49600 4.60643 4.60731 4.63847 4.69298 4.72298 4.72952 4.80120 4.84896 4.93654 4.94944 5.11697 5.13111 5.14512 5.19639 5.35009 5.50661 5.54235 5.58406 5.65696 5.71205 5.92571 5.97526 6.15969 6.25571 6.42245 7.11589 7.31908 7.80057 8.49263 8.94848 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.002517 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.712234 B =11120.914521 C =12045.740244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.020 3.980 3 Si 0.965 3.035 4 H -0.293 1.293 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.354 4.354 8 H 0.074 0.926 9 N -0.452 5.452 10 C 0.472 3.528 11 O -0.576 6.576 12 C -0.114 4.114 13 C 0.118 3.882 14 H 0.038 0.962 15 C 0.038 3.962 16 N -0.542 5.542 17 C 0.096 3.904 18 C -0.090 4.090 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.112 4.112 24 C 0.031 3.969 25 C 0.061 3.939 26 O -0.393 6.393 27 C 0.047 3.953 28 C -0.176 4.176 29 C -0.178 4.178 30 H 0.255 0.745 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.037 0.963 45 H 0.097 0.903 46 H 0.125 0.875 47 H 0.077 0.923 48 H 0.116 0.884 49 H 0.127 0.873 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 -17.168 -11.842 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.186 4.186 3 Si 0.791 3.209 4 H -0.220 1.220 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.482 4.482 8 H 0.092 0.908 9 N -0.173 5.173 10 C 0.261 3.739 11 O -0.456 6.456 12 C -0.155 4.155 13 C 0.059 3.941 14 H 0.056 0.944 15 C -0.090 4.090 16 N -0.267 5.267 17 C -0.030 4.030 18 C -0.090 4.090 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.131 4.131 24 C -0.097 4.097 25 C -0.016 4.016 26 O -0.312 6.312 27 C -0.058 4.058 28 C -0.213 4.213 29 C -0.217 4.217 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.143 0.857 47 H 0.096 0.904 48 H 0.134 0.866 49 H 0.145 0.855 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.672 -16.238 -12.394 22.192 hybrid contribution -0.155 1.081 0.551 1.223 sum -8.827 -15.157 -11.843 21.164 Atomic orbital electron populations 1.69978 1.07806 1.27135 1.45168 1.26038 0.95478 1.02433 0.94636 0.85392 0.79098 0.79072 0.77355 1.22042 1.20817 1.17765 1.19014 0.94381 0.85314 1.49509 0.90826 1.43043 1.44290 1.07803 1.22189 1.20634 0.82192 0.90108 0.80978 1.90496 1.63449 1.36970 1.54731 1.21591 0.99124 0.96838 0.97939 1.21739 0.88162 0.88625 0.95543 0.94392 1.22726 0.97812 0.96617 0.91864 1.62163 1.20599 1.12371 1.31552 1.21095 0.98573 0.90682 0.92655 1.19836 0.94049 1.00259 0.94854 1.21257 0.94480 0.99890 0.98718 1.21407 1.00896 1.00024 0.92406 1.21472 0.94664 0.99469 0.99058 1.21441 0.95487 0.99577 0.98348 1.21232 1.00098 0.99554 0.92201 1.22729 0.93453 0.93018 1.00480 1.22644 0.93316 0.96648 0.89008 1.88152 1.42727 1.64576 1.35698 1.21994 0.94912 0.90645 0.98274 1.23112 1.04017 1.02021 0.92170 1.23335 0.96832 1.00458 1.01030 0.93563 0.89223 0.85828 0.93098 0.87276 0.93115 0.88441 0.85684 0.84417 0.84277 0.84511 0.85493 0.88573 0.93691 0.94490 0.88502 0.85711 0.90404 0.86585 0.85498 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.96 11.74 21.66 0.25 -54.70 16 2 C 0.02 1.21 4.39 84.93 0.37 1.58 16 3 Si 0.97 47.63 29.59 68.60 2.03 49.66 16 4 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 5 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.25 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.35 -20.13 7.91 84.04 0.66 -19.47 16 8 H 0.07 4.06 7.27 -2.91 -0.02 4.04 16 9 N -0.45 -23.12 2.83 -613.12 -1.74 -24.86 16 10 C 0.47 24.71 6.85 87.66 0.60 25.31 16 11 O -0.58 -36.12 13.19 10.70 0.14 -35.98 16 12 C -0.11 -4.33 4.04 29.85 0.12 -4.21 16 13 C 0.12 4.37 2.35 30.62 0.07 4.44 16 14 H 0.04 1.62 7.96 -2.39 -0.02 1.60 16 15 C 0.04 0.98 4.93 86.31 0.43 1.40 16 16 N -0.54 -13.57 4.72 -899.77 -4.25 -17.81 16 17 C 0.10 1.83 5.12 85.56 0.44 2.27 16 18 C -0.09 -1.73 4.88 -19.87 -0.10 -1.83 16 19 C -0.12 -2.23 7.94 22.27 0.18 -2.06 16 20 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 22 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 23 C -0.11 -2.10 9.70 22.27 0.22 -1.89 16 24 C 0.03 0.82 5.28 86.31 0.46 1.27 16 25 C 0.06 2.10 7.01 72.01 0.50 2.61 16 26 O -0.39 -17.04 9.70 -135.21 -1.31 -18.35 16 27 C 0.05 1.80 5.87 44.99 0.26 2.06 16 28 C -0.18 -6.06 9.80 30.62 0.30 -5.76 16 29 C -0.18 -5.52 10.36 30.62 0.32 -5.20 16 30 H 0.26 15.75 8.32 -92.71 -0.77 14.98 16 31 H 0.09 3.22 7.57 -2.39 -0.02 3.20 16 32 H 0.12 3.68 8.11 -2.39 -0.02 3.66 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 2.27 8.09 -2.39 -0.02 2.25 16 35 H 0.05 0.89 8.06 -2.39 -0.02 0.87 16 36 H 0.10 1.58 7.99 -2.39 -0.02 1.56 16 37 H 0.13 1.98 8.03 -2.91 -0.02 1.95 16 38 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 42 H 0.10 2.27 6.03 -2.39 -0.01 2.25 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.13 4.12 6.96 -2.39 -0.02 4.10 16 47 H 0.08 3.15 6.73 -2.39 -0.02 3.13 16 48 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 49 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 50 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -80.75 399.99 1.55 -79.20 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.91 Total: 27.85 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.50 Total: -5.01 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -5.73 Total: -97.37 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -1.17 Total: -54.33 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -80.75 1.55 -79.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074724946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.171 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds