Wall clock time and date at job start Tue Mar 31 2020 07:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30502 * 125.65564 * 2 1 4 4 C 1.34126 * 109.25771 * 180.29333 * 3 2 1 5 5 C 1.34669 * 108.01977 * 359.72292 * 4 3 2 6 6 N 1.35049 * 125.65071 * 179.82386 * 2 1 3 7 7 C 1.46505 * 126.39338 * 359.97235 * 6 2 1 8 8 C 1.53009 * 109.46638 * 84.71977 * 7 6 2 9 9 C 1.52999 * 109.46806 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47053 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00075 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00036 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99913 * 355.27128 * 12 10 9 14 14 C 1.50698 * 109.47481 * 89.99647 * 13 12 10 15 15 H 1.08000 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00101 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99805 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99999 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47446 * 60.00220 * 18 16 14 20 20 H 1.48501 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47219 * 300.00227 * 18 16 14 22 22 C 1.40029 * 120.00136 * 175.26505 * 12 10 9 23 23 C 1.38848 * 120.04630 * 291.85489 * 22 12 10 24 24 C 1.38111 * 119.95418 * 179.76520 * 23 22 12 25 25 C 1.38477 * 120.04272 * 0.51234 * 24 23 22 26 26 F 1.35105 * 119.95486 * 179.72321 * 25 24 23 27 27 C 1.38473 * 120.09119 * 359.73856 * 25 24 23 28 28 C 1.38110 * 120.04505 * 0.02562 * 27 25 24 29 29 H 1.08991 * 109.47058 * 270.17667 * 1 2 3 30 30 H 1.09003 * 109.46480 * 30.17887 * 1 2 3 31 31 H 1.08999 * 109.47338 * 150.17327 * 1 2 3 32 32 H 1.07998 * 125.98912 * 179.72747 * 4 3 2 33 33 H 1.08000 * 126.58806 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47407 * 324.72125 * 7 6 2 35 35 H 1.08994 * 109.47347 * 204.71512 * 7 6 2 36 36 H 1.08995 * 109.47102 * 59.99960 * 8 7 6 37 37 H 1.09001 * 109.46747 * 299.99451 * 8 7 6 38 38 H 1.09010 * 109.47407 * 59.99718 * 9 8 7 39 39 H 1.09004 * 109.47491 * 300.00189 * 9 8 7 40 40 H 1.08997 * 109.47131 * 210.00017 * 13 12 10 41 41 H 1.09000 * 109.47124 * 329.99581 * 13 12 10 42 42 H 0.96998 * 119.99848 * 179.97438 * 17 16 14 43 43 H 1.08002 * 120.02052 * 0.02562 * 23 22 12 44 44 H 1.08002 * 119.98070 * 180.22561 * 24 23 22 45 45 H 1.07999 * 119.97741 * 179.97438 * 27 25 24 46 46 H 1.07998 * 120.02402 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6817 -0.0065 5 6 3.5925 -0.6644 -0.0045 6 7 2.2941 -1.0974 0.0034 7 6 1.8424 -2.4911 0.0082 8 6 1.5584 -2.9400 -1.4267 9 6 1.0873 -4.3957 -1.4217 10 6 0.8069 -4.8377 -2.8349 11 8 0.9676 -4.0645 -3.7553 12 7 0.3777 -6.0924 -3.0759 13 6 0.2826 -7.0576 -1.9779 14 6 -1.0878 -6.9779 -1.3562 15 1 -1.8155 -6.2786 -1.7407 16 6 -1.4132 -7.7986 -0.2971 17 7 -0.5273 -8.6506 0.1708 18 14 -3.1121 -7.7003 0.4731 19 1 -4.1394 -8.0138 -0.5523 20 1 -3.2084 -8.6787 1.5862 21 1 -3.3390 -6.3299 0.9983 22 6 0.0224 -6.4733 -4.3757 23 6 -1.1053 -5.9294 -4.9758 24 6 -1.4512 -6.3028 -6.2597 25 6 -0.6801 -7.2269 -6.9444 26 9 -1.0233 -7.5951 -8.1982 27 6 0.4420 -7.7745 -6.3458 28 6 0.7941 -7.4001 -5.0638 29 1 -0.3633 0.0032 1.0276 30 1 -0.3632 0.8884 -0.5166 31 1 -0.3634 -0.8915 -0.5111 32 1 4.4099 1.3409 -0.0122 33 1 4.4775 -1.2833 -0.0087 34 1 0.9326 -2.5761 0.6024 35 1 2.6186 -3.1230 0.4397 36 1 2.4682 -2.8550 -2.0208 37 1 0.7821 -2.3080 -1.8581 38 1 0.1775 -4.4812 -0.8273 39 1 1.8638 -5.0275 -0.9903 40 1 0.4489 -8.0636 -2.3631 41 1 1.0369 -6.8275 -1.2255 42 1 -0.7561 -9.2277 0.9162 43 1 -1.7093 -5.2116 -4.4405 44 1 -2.3263 -5.8772 -6.7283 45 1 1.0419 -8.4954 -6.8813 46 1 1.6691 -7.8277 -4.5971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075136863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:12 Heat of formation + Delta-G solvation = -1.986608 kcal Electronic energy + Delta-G solvation = -29448.373995 eV Core-core repulsion = 25253.292242 eV Total energy + Delta-G solvation = -4195.081752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.68960 -42.07644 -40.07276 -38.11600 -35.50902 -35.10010 -32.79509 -32.07773 -31.72839 -30.93924 -29.46862 -27.44380 -27.03132 -26.44492 -23.47569 -23.12875 -22.58966 -21.54774 -21.33305 -19.72287 -18.95256 -17.51063 -17.16975 -16.96971 -16.69808 -16.02100 -15.96972 -15.53759 -15.40520 -15.31439 -14.57421 -14.48645 -14.30864 -13.92998 -13.68654 -13.39613 -13.33428 -13.11980 -12.96024 -12.89662 -12.60452 -12.46904 -12.38655 -12.08953 -11.97989 -11.91737 -11.78427 -11.43864 -11.18777 -10.93469 -10.89927 -10.75366 -10.36960 -10.02750 -9.95664 -9.61460 -9.40565 -8.88380 -8.73608 -8.66204 -8.33674 -7.81971 -6.35848 -4.44308 1.35754 1.47729 2.04573 2.75280 3.05945 3.12310 3.15567 3.19103 3.21699 3.56717 3.83777 4.18773 4.47228 4.48485 4.58468 4.73767 4.79346 4.97391 4.98160 5.04058 5.08819 5.24128 5.32061 5.35282 5.43690 5.46667 5.48424 5.49311 5.61614 5.73233 5.79489 5.83562 5.88052 6.07424 6.10324 6.28833 6.31423 6.34901 6.38472 6.57935 6.68155 6.77164 6.92259 7.01163 7.19410 7.40793 7.58036 7.82958 7.97484 8.11832 8.56766 8.73147 9.24237 10.70954 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007916 B = 0.003267 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.514213 B = 8567.941381 C =10956.454163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.206 3.794 3 N -0.498 5.498 4 C -0.034 4.034 5 C -0.057 4.057 6 N -0.450 5.450 7 C 0.100 3.900 8 C -0.117 4.117 9 C -0.131 4.131 10 C 0.523 3.477 11 O -0.558 6.558 12 N -0.562 5.562 13 C 0.239 3.761 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.069 3.931 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.167 3.833 23 C -0.079 4.079 24 C -0.144 4.144 25 C 0.080 3.920 26 F -0.146 7.146 27 C -0.144 4.144 28 C -0.097 4.097 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.044 0.956 42 H 0.268 0.732 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 6.687 -2.144 8.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 N -0.218 5.218 4 C -0.182 4.182 5 C -0.191 4.191 6 N -0.133 5.133 7 C -0.022 4.022 8 C -0.155 4.155 9 C -0.171 4.171 10 C 0.312 3.688 11 O -0.437 6.437 12 N -0.290 5.290 13 C 0.121 3.879 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.076 3.924 23 C -0.099 4.099 24 C -0.163 4.163 25 C 0.061 3.939 26 F -0.125 7.125 27 C -0.164 4.164 28 C -0.116 4.116 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.882 7.573 -2.453 8.856 hybrid contribution -0.602 -1.278 0.378 1.462 sum 3.280 6.295 -2.076 7.396 Atomic orbital electron populations 1.20222 0.85096 1.04257 1.03434 1.23292 0.95727 0.81430 1.05146 1.70219 1.02285 1.28485 1.20798 1.22231 0.94768 0.92794 1.08431 1.22701 0.87228 0.96845 1.12290 1.45479 1.06433 1.07600 1.53748 1.22022 1.02266 0.78748 0.99148 1.21695 1.03243 0.96109 0.94492 1.21523 1.04871 0.95502 0.95186 1.20533 0.76170 0.80927 0.91122 1.90662 1.53491 1.53128 1.46451 1.46011 1.63199 1.12794 1.06954 1.19607 0.98053 0.87344 0.82946 1.21365 0.98415 1.22160 1.16174 0.92005 1.24909 0.97476 0.94667 0.96431 1.69894 1.34495 1.22340 1.25902 0.86570 0.84019 0.78112 0.78918 1.20019 1.21035 1.19976 1.17598 0.93205 0.95806 0.85815 1.21098 0.95268 0.99427 0.94081 1.20936 1.00975 0.99053 0.95366 1.17630 0.96852 0.98955 0.80497 1.91458 1.92079 1.90640 1.38339 1.20893 0.97194 1.02249 0.96016 1.21075 0.99358 0.97929 0.93270 0.90275 0.89320 0.90443 0.81603 0.81058 0.88532 0.88605 0.90774 0.90599 0.87029 0.88542 0.94247 0.93782 0.92252 0.85191 0.84894 0.84828 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.04 36.00 0.36 -0.37 16 2 C 0.21 2.75 7.90 -155.41 -1.23 1.52 16 3 N -0.50 -7.46 11.25 -10.82 -0.12 -7.58 16 4 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 5 C -0.06 -0.67 11.58 -16.57 -0.19 -0.86 16 6 N -0.45 -5.49 2.75 -113.90 -0.31 -5.81 16 7 C 0.10 1.05 5.68 -4.03 -0.02 1.03 16 8 C -0.12 -1.48 4.83 -26.73 -0.13 -1.61 16 9 C -0.13 -1.89 4.36 -27.88 -0.12 -2.01 16 10 C 0.52 9.49 7.53 -10.98 -0.08 9.41 16 11 O -0.56 -11.37 15.75 5.56 0.09 -11.28 16 12 N -0.56 -10.70 2.51 -114.72 -0.29 -10.99 16 13 C 0.24 5.04 4.88 -5.19 -0.03 5.01 16 14 C -0.54 -12.68 9.16 -34.44 -0.32 -13.00 16 15 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 16 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -22.55 13.29 55.43 0.74 -21.81 16 18 Si 0.90 19.04 29.54 -169.99 -5.02 14.01 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 C 0.17 3.08 4.75 -83.66 -0.40 2.68 16 23 C -0.08 -1.37 9.56 -39.40 -0.38 -1.75 16 24 C -0.14 -2.21 10.02 -39.54 -0.40 -2.60 16 25 C 0.08 1.22 7.30 -39.41 -0.29 0.93 16 26 F -0.15 -2.18 17.27 2.25 0.04 -2.14 16 27 C -0.14 -2.12 10.02 -39.54 -0.40 -2.52 16 28 C -0.10 -1.58 9.68 -39.40 -0.38 -1.96 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.74 7.34 -51.93 -0.38 0.36 16 32 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.10 0.91 7.94 -51.93 -0.41 0.50 16 35 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 36 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.08 1.05 7.59 -51.93 -0.39 0.66 16 38 H 0.11 1.66 7.91 -51.92 -0.41 1.25 16 39 H 0.10 1.29 7.26 -51.93 -0.38 0.92 16 40 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 41 H 0.04 0.92 6.47 -51.93 -0.34 0.59 16 42 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 44 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -29.66 397.64 -9.68 -39.34 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.49 Total: 5.41 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -4.30 Total: -5.16 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.01 Total: -46.19 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.66 -9.68 -39.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075136863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.355 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds