Wall clock time and date at job start Tue Mar 31 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 112.77748 * 2 1 4 4 C 1.53750 * 113.46682 * 229.09573 * 2 1 3 5 5 C 1.53497 * 83.25922 * 271.50381 * 4 2 1 6 6 N 1.47062 * 113.46494 * 130.77682 * 2 1 3 7 7 C 1.34777 * 136.05820 * 267.69022 * 6 2 1 8 8 O 1.21279 * 120.00275 * 359.64038 * 7 6 2 9 9 C 1.50707 * 120.00134 * 179.63165 * 7 6 2 10 10 C 1.52994 * 109.47078 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.46774 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00097 * 354.45796 * 11 10 9 13 13 N 1.34775 * 119.99667 * 174.45902 * 11 10 9 14 14 C 1.46506 * 120.00030 * 184.45100 * 13 11 10 15 15 C 1.50707 * 109.47103 * 270.00389 * 14 13 11 16 16 H 1.07998 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99566 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99583 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00402 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47238 * 89.99541 * 19 17 15 21 21 H 1.48498 * 109.47115 * 210.00193 * 19 17 15 22 22 H 1.48506 * 109.46916 * 329.99775 * 19 17 15 23 23 C 1.39923 * 120.00153 * 4.45919 * 13 11 10 24 24 C 1.38872 * 120.07336 * 66.79372 * 23 13 11 25 25 C 1.38113 * 119.92646 * 179.97438 * 24 23 13 26 26 C 1.38284 * 120.07236 * 359.97313 * 25 24 23 27 27 C 1.38277 * 120.14310 * 0.04475 * 26 25 24 28 28 C 1.38117 * 120.06854 * 359.96101 * 27 26 25 29 29 H 1.08996 * 109.47232 * 289.21907 * 1 2 3 30 30 H 1.08994 * 109.47260 * 49.22155 * 1 2 3 31 31 H 1.09006 * 109.46918 * 169.22036 * 1 2 3 32 32 H 1.08997 * 109.46881 * 190.78159 * 3 2 1 33 33 H 1.09000 * 109.47371 * 310.77941 * 3 2 1 34 34 H 1.09000 * 109.47510 * 70.78117 * 3 2 1 35 35 H 1.09000 * 114.39452 * 157.94083 * 4 2 1 36 36 H 1.09002 * 114.26796 * 25.05981 * 4 2 1 37 37 H 1.08994 * 113.46727 * 218.98441 * 5 4 2 38 38 H 1.09000 * 113.46543 * 88.54425 * 5 4 2 39 39 H 1.09004 * 109.46647 * 60.00234 * 9 7 6 40 40 H 1.09001 * 109.46925 * 300.01087 * 9 7 6 41 41 H 1.08998 * 109.47255 * 60.00377 * 10 9 7 42 42 H 1.08998 * 109.47196 * 299.99859 * 10 9 7 43 43 H 1.09001 * 109.46670 * 30.00181 * 14 13 11 44 44 H 1.08996 * 109.47328 * 150.00546 * 14 13 11 45 45 H 0.97000 * 120.00347 * 180.02562 * 18 17 15 46 46 H 1.07996 * 120.03472 * 359.70196 * 24 23 13 47 47 H 1.07998 * 119.96255 * 179.97438 * 25 24 23 48 48 H 1.08010 * 119.92736 * 180.02562 * 26 25 24 49 49 H 1.07999 * 119.96673 * 179.97438 * 27 26 25 50 50 H 1.07999 * 120.03237 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1224 1.4107 0.0000 4 6 2.1423 -0.9235 -1.0659 5 6 2.0338 -1.9774 0.0447 6 7 2.1156 -0.8811 1.0215 7 6 2.5366 -0.7450 2.2946 8 8 2.4698 0.3345 2.8434 9 6 3.0902 -1.9343 3.0364 10 6 3.4913 -1.5115 4.4510 11 6 4.0454 -2.7008 5.1926 12 8 4.0205 -3.8001 4.6808 13 7 4.5687 -2.5427 6.4245 14 6 5.1952 -3.6785 7.1056 15 6 4.1579 -4.4132 7.9152 16 1 3.1343 -4.0688 7.9214 17 6 4.5156 -5.5256 8.6470 18 7 3.6103 -6.1671 9.3531 19 14 6.2859 -6.1217 8.6356 20 1 7.0368 -5.4637 9.7349 21 1 6.3138 -7.5938 8.8288 22 1 6.9144 -5.7813 7.3339 23 6 4.5134 -1.2938 7.0531 24 6 3.2896 -0.7614 7.4367 25 6 3.2386 0.4714 8.0574 26 6 4.4046 1.1750 8.2977 27 6 5.6248 0.6477 7.9167 28 6 5.6825 -0.5845 7.2954 29 1 -0.3633 0.3383 0.9703 30 1 -0.3633 0.6712 -0.7781 31 1 -0.3633 -1.0096 -0.1922 32 1 3.1938 1.3548 -0.1922 33 1 1.6442 2.0056 -0.7782 34 1 1.9512 1.8767 0.9704 35 1 3.1655 -0.6722 -1.3453 36 1 1.4950 -1.1092 -1.9231 37 1 2.8851 -2.6571 0.0828 38 1 1.0766 -2.4987 0.0564 39 1 3.9645 -2.3165 2.5094 40 1 2.3302 -2.7137 3.0921 41 1 2.6168 -1.1297 4.9778 42 1 4.2512 -0.7321 4.3956 43 1 5.6241 -4.3542 6.3656 44 1 5.9826 -3.3165 7.7667 45 1 3.8619 -6.9495 9.8683 46 1 2.3783 -1.3086 7.2458 47 1 2.2871 0.8862 8.3556 48 1 4.3620 2.1386 8.7837 49 1 6.5336 1.1998 8.1053 50 1 6.6358 -0.9956 6.9977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075144753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:51 Heat of formation + Delta-G solvation = -4.980713 kcal Electronic energy + Delta-G solvation = -30306.160413 eV Core-core repulsion = 26299.835042 eV Total energy + Delta-G solvation = -4006.325370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.98896 -39.98687 -38.40630 -37.89128 -34.97540 -32.97904 -32.51242 -31.66562 -30.65104 -29.73196 -29.51257 -27.90630 -27.74744 -25.32269 -23.33083 -22.67566 -22.45415 -21.96185 -21.02373 -18.94668 -18.22496 -17.23853 -16.94482 -16.39488 -16.24837 -16.10714 -15.71354 -15.47566 -15.43786 -14.79132 -14.37666 -14.11017 -14.03062 -13.80392 -13.66356 -13.13830 -13.01393 -12.95923 -12.70542 -12.54538 -12.44763 -12.38456 -12.27584 -12.05043 -11.93655 -11.84428 -11.70786 -11.59793 -11.32586 -11.17101 -10.89403 -10.82675 -10.62864 -10.57117 -10.19307 -9.68751 -9.57575 -9.38937 -8.87150 -8.65591 -8.59508 -8.59280 -7.69240 -6.09046 -4.07760 1.58835 1.68598 2.53067 2.69406 3.21372 3.26590 3.33638 3.36866 3.67471 3.94558 4.06766 4.36527 4.38664 4.55031 4.65520 4.66616 4.92257 5.02776 5.08347 5.12628 5.18056 5.20974 5.23991 5.25561 5.27426 5.34227 5.38772 5.41177 5.47942 5.57742 5.64631 5.68844 5.72693 5.84557 5.86035 5.92996 5.98454 6.07100 6.08269 6.12585 6.28774 6.57580 6.67509 6.76389 6.78257 6.92201 7.10362 7.35008 7.57750 7.61531 8.12685 8.19197 8.44341 8.82473 8.94553 9.50101 11.04372 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.003016 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.758590 B = 9281.083871 C =10901.478322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 C -0.150 4.150 4 C -0.148 4.148 5 C 0.097 3.903 6 N -0.644 5.644 7 C 0.545 3.455 8 O -0.537 6.537 9 C -0.117 4.117 10 C -0.122 4.122 11 C 0.516 3.484 12 O -0.529 6.529 13 N -0.556 5.556 14 C 0.218 3.782 15 C -0.526 4.526 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.896 5.896 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.264 1.264 23 C 0.161 3.839 24 C -0.116 4.116 25 C -0.107 4.107 26 C -0.132 4.132 27 C -0.110 4.110 28 C -0.128 4.128 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.028 0.972 45 H 0.265 0.735 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 15.451 -18.327 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.068 3.932 3 C -0.208 4.208 4 C -0.186 4.186 5 C -0.026 4.026 6 N -0.381 5.381 7 C 0.336 3.664 8 O -0.413 6.413 9 C -0.158 4.158 10 C -0.163 4.163 11 C 0.304 3.696 12 O -0.405 6.405 13 N -0.283 5.283 14 C 0.099 3.901 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.700 3.300 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.189 1.189 23 C 0.069 3.931 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.150 4.150 27 C -0.129 4.129 28 C -0.148 4.148 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.014 15.234 -17.940 23.621 hybrid contribution 0.756 -0.605 0.396 1.046 sum -1.258 14.630 -17.544 22.878 Atomic orbital electron populations 1.21953 0.93091 1.02647 1.03040 1.21996 0.93892 0.92646 0.84684 1.21937 1.00801 0.94830 1.03224 1.23603 1.02418 0.96314 0.96289 1.22970 1.02577 0.91810 0.85260 1.49945 1.62692 1.13878 1.11561 1.20419 0.76942 0.90435 0.78639 1.90691 1.56145 1.28638 1.65843 1.21327 1.03255 0.96063 0.95108 1.21412 1.03329 0.97156 0.94390 1.20406 0.77938 0.90020 0.81264 1.90676 1.55496 1.26831 1.67530 1.45601 1.58084 1.08987 1.15666 1.19795 0.93913 0.83653 0.92739 1.21252 0.96630 1.11447 1.27123 0.90656 1.24822 0.97313 0.95937 0.94811 1.69887 1.33528 1.19782 1.30241 0.86889 0.85536 0.78567 0.79037 1.20030 1.20851 1.18854 1.17673 0.93257 0.85921 0.96214 1.21356 0.97590 0.96172 0.98464 1.20983 0.98359 0.94506 0.98687 1.21065 0.92633 1.00047 1.01270 1.20934 0.97765 0.95406 0.98806 1.21247 0.97882 0.94823 1.00819 0.91636 0.90988 0.91788 0.92237 0.91678 0.90883 0.88675 0.89294 0.89995 0.89602 0.88457 0.88035 0.88342 0.88772 0.93814 0.95430 0.92536 0.85839 0.86030 0.86343 0.86126 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.27 37.16 0.34 -0.75 16 2 C 0.15 1.31 1.60 -136.16 -0.22 1.09 16 3 C -0.15 -1.36 9.04 37.16 0.34 -1.02 16 4 C -0.15 -0.90 7.60 -26.08 -0.20 -1.10 16 5 C 0.10 0.73 8.04 -8.51 -0.07 0.66 16 6 N -0.64 -7.03 3.37 -169.79 -0.57 -7.60 16 7 C 0.54 7.64 7.98 -10.98 -0.09 7.56 16 8 O -0.54 -9.10 15.57 5.56 0.09 -9.01 16 9 C -0.12 -1.67 4.83 -27.88 -0.13 -1.81 16 10 C -0.12 -2.00 3.65 -27.88 -0.10 -2.11 16 11 C 0.52 10.65 7.53 -10.98 -0.08 10.57 16 12 O -0.53 -12.58 15.61 5.55 0.09 -12.50 16 13 N -0.56 -11.98 2.51 -114.73 -0.29 -12.26 16 14 C 0.22 5.44 4.14 -5.19 -0.02 5.42 16 15 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 16 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 17 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 19 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 23 C 0.16 3.01 4.42 -83.69 -0.37 2.64 16 24 C -0.12 -2.02 8.46 -39.39 -0.33 -2.35 16 25 C -0.11 -1.55 10.04 -39.61 -0.40 -1.95 16 26 C -0.13 -1.75 10.04 -39.55 -0.40 -2.15 16 27 C -0.11 -1.52 10.04 -39.61 -0.40 -1.91 16 28 C -0.13 -2.08 9.64 -39.39 -0.38 -2.46 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 7.05 -51.93 -0.37 0.04 16 32 H 0.06 0.55 7.99 -51.93 -0.41 0.13 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.85 7.28 -51.93 -0.38 0.47 16 35 H 0.09 0.57 8.02 -51.93 -0.42 0.15 16 36 H 0.09 0.36 8.11 -51.93 -0.42 -0.06 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.55 7.32 -51.93 -0.38 0.17 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.10 1.46 8.04 -51.93 -0.42 1.04 16 41 H 0.10 1.62 6.95 -51.93 -0.36 1.26 16 42 H 0.09 1.49 7.97 -51.93 -0.41 1.08 16 43 H 0.04 1.14 6.54 -51.93 -0.34 0.80 16 44 H 0.03 0.66 7.25 -51.93 -0.38 0.28 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.12 2.20 7.90 -52.49 -0.41 1.78 16 47 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 48 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 49 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 50 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 410.72 15.07 6.19 6.19 Total: -1.00 -35.97 410.72 -9.44 -45.41 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.10 Total: 3.15 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.95 Total: -3.28 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.09 Total: -46.95 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.17 Total: -21.51 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.97 -9.44 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075144753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.427 kcal (2) G-P(sol) polarization free energy of solvation -35.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds