Wall clock time and date at job start Tue Mar 31 2020 07:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99648 * 2 1 4 4 C 1.52999 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47288 * 64.99457 * 4 3 2 6 6 C 1.46499 * 120.00449 * 262.79601 * 5 4 3 7 7 C 1.50697 * 109.47220 * 274.10192 * 6 5 4 8 8 H 1.07993 * 120.00094 * 4.97206 * 7 6 5 9 9 C 1.37881 * 120.00103 * 184.97656 * 7 6 5 10 10 N 1.31506 * 120.00374 * 184.94501 * 9 7 6 11 11 Si 1.86800 * 119.99637 * 4.94899 * 9 7 6 12 12 H 1.48496 * 109.47424 * 94.55237 * 11 9 7 13 13 H 1.48501 * 109.46955 * 214.55621 * 11 9 7 14 14 H 1.48503 * 109.47261 * 334.55242 * 11 9 7 15 15 C 1.34777 * 119.99485 * 82.80145 * 5 4 3 16 16 O 1.21663 * 119.99804 * 181.85367 * 15 5 4 17 17 C 1.46978 * 120.00635 * 1.85345 * 15 5 4 18 18 O 1.34949 * 125.12244 * 2.95115 * 17 15 5 19 19 C 1.34713 * 110.86462 * 180.02562 * 18 17 15 20 20 C 1.40768 * 107.59156 * 0.24675 * 19 18 17 21 21 C 1.35814 * 125.13290 * 183.59454 * 17 15 5 22 22 C 1.50703 * 126.95409 * 359.35839 * 21 17 15 23 23 C 1.39669 * 120.08669 * 180.33575 * 20 19 18 24 24 C 1.50695 * 120.14113 * 179.74771 * 23 20 19 25 25 C 1.36655 * 119.71223 * 359.72780 * 23 20 19 26 26 C 1.38794 * 120.44381 * 0.02562 * 25 23 20 27 27 C 1.37845 * 120.74399 * 359.97438 * 26 25 23 28 28 C 1.50693 * 120.07216 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47293 * 300.00113 * 1 2 3 30 30 H 1.08999 * 109.46986 * 60.00452 * 1 2 3 31 31 H 1.09004 * 109.46343 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47305 * 60.00010 * 3 2 1 33 33 H 1.09008 * 109.47047 * 300.00023 * 3 2 1 34 34 H 1.09001 * 109.47085 * 304.99639 * 4 3 2 35 35 H 1.08998 * 109.47289 * 185.00236 * 4 3 2 36 36 H 1.09001 * 109.46877 * 34.09849 * 6 5 4 37 37 H 1.08999 * 109.47135 * 154.09810 * 6 5 4 38 38 H 0.97003 * 120.00341 * 179.97438 * 10 9 7 39 39 H 1.08993 * 109.46888 * 264.50687 * 22 21 17 40 40 H 1.08997 * 109.47301 * 24.50888 * 22 21 17 41 41 H 1.09003 * 109.46910 * 144.50874 * 22 21 17 42 42 H 1.09000 * 109.47337 * 276.76526 * 24 23 20 43 43 H 1.09009 * 109.47197 * 36.76731 * 24 23 20 44 44 H 1.09005 * 109.47248 * 156.75757 * 24 23 20 45 45 H 1.07991 * 119.77858 * 179.97438 * 25 23 20 46 46 H 1.07999 * 119.62932 * 179.97438 * 26 25 23 47 47 H 1.09010 * 109.46844 * 85.07343 * 28 27 26 48 48 H 1.09001 * 109.47862 * 325.07543 * 28 27 26 49 49 H 1.09004 * 109.47485 * 205.07024 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2574 -0.8724 -1.2989 7 6 5.6799 -1.1196 -0.8672 8 1 6.2859 -0.3002 -0.5100 9 6 6.2077 -2.3919 -0.9282 10 7 7.4145 -2.6263 -0.4614 11 14 5.2084 -3.7827 -1.6742 12 1 5.5677 -3.9375 -3.1067 13 1 5.5017 -5.0462 -0.9510 14 1 3.7613 -3.4703 -1.5578 15 6 4.1217 1.3159 -2.3620 16 8 4.4547 0.7951 -3.4099 17 6 3.8786 2.7643 -2.3059 18 8 3.5617 3.4558 -1.1912 19 6 3.4019 4.7646 -1.4677 20 6 3.6224 4.9380 -2.8471 21 6 3.9269 3.6067 -3.3701 22 6 4.2460 3.2452 -4.7980 23 6 3.5285 6.2098 -3.4167 24 6 3.7699 6.3978 -4.8923 25 6 3.2165 7.2829 -2.6302 26 6 2.9930 7.1168 -1.2704 27 6 3.0808 5.8701 -0.6890 28 6 2.8358 5.7073 0.7890 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8515 0.5684 0.8410 35 1 3.9785 2.1766 0.0890 36 1 3.5776 -1.3977 -0.6279 37 1 4.1178 -1.2375 -2.3164 38 1 7.7857 -3.5215 -0.5040 39 1 5.3044 3.4214 -4.9895 40 1 4.0164 2.1931 -4.9664 41 1 3.6478 3.8599 -5.4707 42 1 4.8409 6.4791 -5.0778 43 1 3.3706 5.5426 -5.4376 44 1 3.2726 7.3076 -5.2288 45 1 3.1440 8.2668 -3.0693 46 1 2.7477 7.9741 -0.6610 47 1 1.7663 5.5997 0.9703 48 1 3.2074 6.5849 1.3179 49 1 3.3562 4.8193 1.1480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075582708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:58 Heat of formation + Delta-G solvation = -50.140116 kcal Electronic energy + Delta-G solvation = -31589.238720 eV Core-core repulsion = 27483.236428 eV Total energy + Delta-G solvation = -4106.002291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55691 -39.26741 -38.21437 -37.62348 -35.36613 -34.63081 -32.63327 -32.49897 -30.27191 -29.81775 -29.49138 -28.22923 -26.92925 -26.04503 -25.01772 -23.76537 -22.82782 -22.61239 -21.69998 -19.29046 -19.16535 -17.66025 -16.96788 -16.85690 -16.46408 -16.14202 -15.82706 -15.43075 -15.22229 -15.02191 -14.71125 -14.22156 -14.09619 -13.94530 -13.67344 -13.55487 -13.38758 -13.08878 -12.89800 -12.77077 -12.75646 -12.53846 -12.34275 -12.09038 -11.95556 -11.89587 -11.70608 -11.54678 -11.50780 -11.38280 -10.97371 -10.92923 -10.74914 -10.45445 -10.09154 -9.67290 -9.59680 -9.50255 -9.33304 -8.65000 -8.52871 -8.04496 -7.70094 -6.06147 -4.04706 0.61503 1.25532 1.93485 2.60153 3.34322 3.40927 3.45571 3.50056 3.61225 3.66568 3.99245 4.39545 4.44728 4.46040 4.64970 4.80734 4.89643 5.04968 5.06526 5.21798 5.23695 5.28587 5.30483 5.37345 5.41517 5.44637 5.44953 5.49172 5.50467 5.55678 5.58282 5.69644 5.73577 5.76249 5.85414 5.91181 5.99676 6.07625 6.13192 6.24100 6.34112 6.40919 6.50525 6.55754 6.82990 6.98628 7.10697 7.27784 7.32527 7.63994 8.10794 8.45693 8.71807 8.97106 9.54621 11.06905 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.003672 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.599353 B = 7622.481095 C = 8616.576932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.050 3.950 4 C 0.108 3.892 5 N -0.567 5.567 6 C 0.220 3.780 7 C -0.533 4.533 8 H 0.075 0.925 9 C 0.075 3.925 10 N -0.896 5.896 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.585 3.415 16 O -0.514 6.514 17 C -0.016 4.016 18 O -0.174 6.174 19 C 0.063 3.937 20 C -0.131 4.131 21 C -0.095 4.095 22 C -0.096 4.096 23 C -0.033 4.033 24 C -0.121 4.121 25 C -0.142 4.142 26 C -0.090 4.090 27 C -0.082 4.082 28 C -0.113 4.113 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.698 20.171 -1.369 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.028 4.028 4 C -0.016 4.016 5 N -0.296 5.296 6 C 0.100 3.900 7 C -0.572 4.572 8 H 0.093 0.907 9 C -0.127 4.127 10 N -0.535 5.535 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.187 1.187 15 C 0.371 3.629 16 O -0.393 6.393 17 C -0.065 4.065 18 O -0.077 6.077 19 C 0.015 3.985 20 C -0.132 4.132 21 C -0.098 4.098 22 C -0.152 4.152 23 C -0.033 4.033 24 C -0.177 4.177 25 C -0.160 4.160 26 C -0.108 4.108 27 C -0.082 4.082 28 C -0.169 4.169 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.145 0.855 46 H 0.150 0.850 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.297 19.387 -1.602 23.563 hybrid contribution -0.554 -0.340 -0.244 0.694 sum -13.850 19.047 -1.845 23.623 Atomic orbital electron populations 1.22696 0.81933 1.02480 0.99338 1.88029 1.18868 1.27546 1.95230 1.23081 0.94920 0.84861 0.99933 1.21813 0.91345 0.99801 0.88612 1.47819 1.62889 1.10938 1.07940 1.19813 0.97201 0.74562 0.98377 1.21323 0.96067 0.95700 1.44079 0.90710 1.24811 0.94846 0.98405 0.94660 1.69900 1.15989 1.21780 1.45798 0.86862 0.81323 0.81807 0.79882 1.20000 1.21116 1.18651 1.16742 0.79132 0.82044 0.84994 1.90797 1.48328 1.70639 1.29533 1.22301 1.06585 0.93388 0.84275 1.84344 1.72916 1.16714 1.33693 1.19660 1.01327 0.83838 0.93638 1.19630 1.06706 0.93607 0.93209 1.21278 1.01957 0.89818 0.96775 1.20569 1.01703 1.04037 0.88878 1.19103 0.97307 0.90578 0.96342 1.20942 1.02512 1.02771 0.91471 1.20592 1.03493 0.98298 0.93629 1.20789 0.99664 0.95450 0.94942 1.18774 1.04072 0.89482 0.95916 1.20737 1.02268 1.03164 0.90748 0.94471 0.94603 0.89830 0.92716 0.93678 0.88205 0.88344 0.93958 0.94255 0.92574 0.90684 0.88720 0.91468 0.90727 0.90691 0.91444 0.85488 0.84962 0.91086 0.91119 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.36 10.31 -35.23 -0.36 -6.73 16 3 C 0.05 0.76 5.70 37.16 0.21 0.97 16 4 C 0.11 1.91 5.40 -4.04 -0.02 1.89 16 5 N -0.57 -12.39 2.42 -176.50 -0.43 -12.81 16 6 C 0.22 5.56 4.18 -5.20 -0.02 5.54 16 7 C -0.53 -15.49 9.93 -34.44 -0.34 -15.83 16 8 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 10 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 11 Si 0.87 22.05 27.42 -169.99 -4.66 17.39 16 12 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.26 -6.34 6.66 56.52 0.38 -5.96 16 15 C 0.59 12.67 7.59 -12.72 -0.10 12.57 16 16 O -0.51 -12.44 14.04 5.22 0.07 -12.37 16 17 C -0.02 -0.29 6.36 -36.91 -0.23 -0.52 16 18 O -0.17 -2.79 6.12 2.77 0.02 -2.77 16 19 C 0.06 0.91 7.05 -38.35 -0.27 0.64 16 20 C -0.13 -1.88 6.16 -105.19 -0.65 -2.53 16 21 C -0.10 -1.54 6.39 -102.28 -0.65 -2.20 16 22 C -0.10 -1.38 9.34 36.01 0.34 -1.04 16 23 C -0.03 -0.38 5.88 -104.66 -0.62 -1.00 16 24 C -0.12 -1.08 9.56 36.00 0.34 -0.74 16 25 C -0.14 -1.38 9.60 -39.95 -0.38 -1.76 16 26 C -0.09 -0.86 9.69 -39.52 -0.38 -1.24 16 27 C -0.08 -0.93 5.89 -104.49 -0.62 -1.55 16 28 C -0.11 -1.01 10.02 36.00 0.36 -0.64 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.70 7.17 -51.92 -0.37 0.33 16 34 H 0.10 1.82 8.02 -51.93 -0.42 1.40 16 35 H 0.10 1.61 5.29 -51.93 -0.27 1.34 16 36 H 0.04 1.06 7.38 -51.93 -0.38 0.67 16 37 H 0.04 1.05 6.27 -51.93 -0.33 0.72 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.56 6.13 -51.93 -0.32 1.24 16 41 H 0.07 0.77 5.74 -51.93 -0.30 0.47 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.68 5.54 -51.92 -0.29 0.39 16 44 H 0.07 0.46 8.03 -51.93 -0.42 0.05 16 45 H 0.13 0.89 8.04 -52.49 -0.42 0.47 16 46 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 48 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 49 H 0.07 0.68 8.05 -51.93 -0.42 0.27 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -34.51 395.55 -7.96 -42.47 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.32 Total: -0.31 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.02 Total: -3.81 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.35 Total: -39.83 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.27 Total: -21.86 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.66 Total: 17.39 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.51 -7.96 -42.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.669 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds