Wall clock time and date at job start Tue Mar 31 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38353 * 119.85452 * 2 1 4 4 C 1.37977 * 120.14125 * 179.97438 * 3 2 1 5 5 C 1.39545 * 119.85205 * 359.97438 * 4 3 2 6 6 C 1.47867 * 120.13824 * 180.02562 * 5 4 3 7 7 N 1.30222 * 125.47372 * 180.02562 * 6 5 4 8 8 C 1.31304 * 117.04760 * 180.02562 * 7 6 5 9 9 C 1.50703 * 122.08254 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47270 * 305.03052 * 9 8 7 11 11 O 1.21282 * 119.99614 * 359.97438 * 10 9 8 12 12 N 1.34765 * 120.00307 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99657 * 359.97438 * 12 10 9 14 14 C 1.46500 * 120.00187 * 179.97438 * 12 10 9 15 15 H 1.08993 * 109.47452 * 359.97438 * 14 12 10 16 16 C 1.53006 * 109.46998 * 119.99824 * 14 12 10 17 17 C 1.50698 * 109.46840 * 239.99650 * 14 12 10 18 18 H 1.07993 * 120.00472 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99909 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00357 * 180.02562 * 19 17 14 21 21 Si 1.86806 * 119.99802 * 359.97438 * 19 17 14 22 22 H 1.48505 * 109.46841 * 89.99881 * 21 19 17 23 23 H 1.48494 * 109.47129 * 210.00104 * 21 19 17 24 24 H 1.48501 * 109.47268 * 330.00196 * 21 19 17 25 25 C 1.33723 * 115.84565 * 0.24908 * 8 7 6 26 26 S 1.76179 * 125.47335 * 0.04369 * 6 5 4 27 27 C 1.39545 * 119.71813 * 0.27841 * 5 4 3 28 28 C 1.37965 * 119.85508 * 359.44899 * 27 5 4 29 29 H 1.09002 * 109.46553 * 90.00223 * 1 2 3 30 30 H 1.08994 * 109.46871 * 210.00148 * 1 2 3 31 31 H 1.08999 * 109.47066 * 330.00915 * 1 2 3 32 32 H 1.07998 * 119.93023 * 359.94979 * 3 2 1 33 33 H 1.07995 * 120.07106 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.47455 * 185.02199 * 9 8 7 35 35 H 1.09002 * 109.46671 * 65.02300 * 9 8 7 36 36 H 1.08997 * 109.47192 * 269.99706 * 13 12 10 37 37 H 1.08998 * 109.47450 * 30.00682 * 13 12 10 38 38 H 1.09005 * 109.46920 * 150.00364 * 13 12 10 39 39 H 1.09001 * 109.46998 * 179.97438 * 16 14 12 40 40 H 1.09000 * 109.47050 * 299.99945 * 16 14 12 41 41 H 1.09001 * 109.46801 * 60.00058 * 16 14 12 42 42 H 0.97001 * 120.00117 * 180.02562 * 20 19 17 43 43 H 1.07997 * 125.89695 * 179.73827 * 25 8 7 44 44 H 1.08006 * 120.07461 * 179.70092 * 27 5 4 45 45 H 1.08002 * 119.92904 * 180.27395 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5755 1.2068 0.0005 5 6 4.2762 0.0000 0.0016 6 6 5.7548 0.0000 0.0028 7 7 6.5105 -1.0605 0.0033 8 6 7.8094 -0.8680 0.0049 9 6 8.7883 -2.0138 0.0063 10 6 8.4932 -2.9254 1.1695 11 8 7.5783 -2.6694 1.9235 12 7 9.2458 -4.0248 1.3720 13 6 10.3505 -4.3342 0.4609 14 6 8.9592 -4.9106 2.5031 15 1 8.1097 -4.5207 3.0638 16 6 8.6283 -6.3110 1.9832 17 6 10.1652 -4.9811 3.4040 18 1 11.0562 -4.4225 3.1583 19 6 10.1312 -5.7590 4.5419 20 7 11.1835 -5.8203 5.3284 21 14 8.5898 -6.7248 4.9673 22 1 8.6635 -8.0726 4.3480 23 1 8.4833 -6.8628 6.4420 24 1 7.3972 -6.0069 4.4498 25 6 8.2097 0.4079 0.0109 26 16 6.7772 1.4348 0.0040 27 6 3.5754 -1.2067 -0.0037 28 6 2.1958 -1.1998 0.0014 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6522 2.1332 -0.0008 33 1 4.1120 2.1441 0.0010 34 1 9.8025 -1.6252 0.0974 35 1 8.6955 -2.5721 -0.9253 36 1 9.9849 -4.9575 -0.3551 37 1 10.7580 -3.4078 0.0561 38 1 11.1308 -4.8676 1.0039 39 1 8.4155 -6.9702 2.8248 40 1 7.7560 -6.2599 1.3316 41 1 9.4782 -6.7006 1.4228 42 1 11.1596 -6.3678 6.1287 43 1 9.2340 0.7501 0.0170 44 1 4.1119 -2.1441 -0.0078 45 1 1.6523 -2.1331 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075582816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:23 Heat of formation + Delta-G solvation = 40.784853 kcal Electronic energy + Delta-G solvation = -26694.253558 eV Core-core repulsion = 22996.832507 eV Total energy + Delta-G solvation = -3697.421050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.19008 -39.39899 -38.53187 -35.42207 -33.83411 -32.82622 -31.62567 -31.17863 -30.31629 -28.15758 -27.46176 -26.14912 -25.09954 -24.07895 -23.00412 -21.82126 -20.92781 -19.26320 -18.58946 -17.72511 -17.00812 -16.60844 -16.08493 -15.59282 -15.44519 -15.35268 -14.83771 -14.67249 -14.41037 -14.11109 -13.80411 -13.66490 -13.35117 -13.14113 -12.93312 -12.77845 -12.51612 -12.43170 -12.25142 -12.18918 -12.05543 -11.73191 -11.63639 -11.49709 -11.32143 -11.17804 -11.06004 -10.69638 -10.12354 -9.78185 -9.62572 -9.62191 -9.31805 -9.19161 -9.14598 -8.94122 -8.62020 -8.11703 -7.67659 -6.13800 -4.14009 0.19807 1.21176 1.27427 1.42041 1.65488 2.85753 3.24797 3.35661 3.38409 3.42334 3.64127 3.87179 3.91466 4.36884 4.55681 4.63241 4.76985 4.80969 5.05943 5.08246 5.14662 5.19520 5.21391 5.29037 5.30180 5.44060 5.48734 5.54384 5.66662 5.73900 5.78736 5.85970 5.98254 6.02257 6.23751 6.28142 6.30454 6.32690 6.37355 6.38438 6.52467 6.73101 6.86496 7.16869 7.40832 7.65847 7.80657 8.22233 8.50107 8.86015 8.98685 9.47905 10.98887 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.002815 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.948064 B = 9943.911978 C =11394.273304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.075 4.075 3 C -0.122 4.122 4 C -0.095 4.095 5 C -0.027 4.027 6 C 0.117 3.883 7 N -0.429 5.429 8 C 0.099 3.901 9 C -0.070 4.070 10 C 0.511 3.489 11 O -0.535 6.535 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.231 3.769 15 H 0.061 0.939 16 C -0.159 4.159 17 C -0.527 4.527 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.896 5.896 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.263 1.263 25 C -0.245 4.245 26 S 0.067 5.933 27 C -0.063 4.063 28 C -0.122 4.122 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.032 0.968 41 H 0.055 0.945 42 H 0.265 0.735 43 H 0.180 0.820 44 H 0.138 0.862 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 13.989 -16.314 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.116 4.116 5 C -0.031 4.031 6 C -0.159 4.159 7 N -0.141 5.141 8 C -0.034 4.034 9 C -0.113 4.113 10 C 0.297 3.703 11 O -0.411 6.411 12 N -0.322 5.322 13 C -0.063 4.063 14 C 0.129 3.871 15 H 0.079 0.921 16 C -0.217 4.217 17 C -0.565 4.565 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.534 5.534 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.188 1.188 25 C -0.384 4.384 26 S 0.324 5.676 27 C -0.085 4.085 28 C -0.140 4.140 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.197 0.803 44 H 0.156 0.844 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.895 14.646 -15.733 26.151 hybrid contribution 0.320 -1.291 0.405 1.390 sum -14.575 13.355 -15.327 25.014 Atomic orbital electron populations 1.20830 0.90993 1.03014 1.02433 1.20085 0.96273 0.93151 0.98122 1.20862 0.93406 0.97778 1.01914 1.21114 0.94494 0.96499 0.99445 1.17817 0.86896 0.94375 1.03977 1.25753 0.96973 0.89350 1.03797 1.66225 1.04112 1.30169 1.13614 1.19547 0.89789 0.93345 1.00765 1.20380 0.97476 0.93525 0.99891 1.20041 0.82694 0.81712 0.85889 1.90681 1.30604 1.72740 1.47119 1.47833 1.30771 1.24509 1.29105 1.21667 0.90921 1.00424 0.93245 1.19248 0.98540 0.85409 0.83937 0.92075 1.22435 0.99661 0.99576 1.00065 1.21170 0.99526 1.29170 1.06619 0.90345 1.24863 0.95991 0.96204 0.95687 1.69873 1.29086 1.40159 1.14254 0.86917 0.84594 0.80505 0.76694 1.20394 1.22180 1.18794 1.26714 1.02986 0.95313 1.13344 1.84646 0.98988 1.13364 1.70628 1.21354 0.93794 0.97894 0.95411 1.21046 0.93807 0.97848 1.01323 0.90979 0.91302 0.91412 0.85503 0.85806 0.87537 0.87630 0.93755 0.92549 0.89609 0.93289 0.94848 0.92632 0.92463 0.80308 0.84406 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.08 -0.69 5.89 -104.54 -0.62 -1.31 16 3 C -0.12 -1.10 9.68 -39.63 -0.38 -1.49 16 4 C -0.10 -1.01 9.61 -39.19 -0.38 -1.39 16 5 C -0.03 -0.35 5.87 -104.98 -0.62 -0.97 16 6 C 0.12 1.74 7.35 -14.29 -0.11 1.63 16 7 N -0.43 -7.34 9.22 -7.55 -0.07 -7.41 16 8 C 0.10 1.54 5.61 -84.40 -0.47 1.07 16 9 C -0.07 -1.03 4.72 -29.03 -0.14 -1.17 16 10 C 0.51 10.43 7.63 -10.99 -0.08 10.35 16 11 O -0.53 -13.23 14.75 5.56 0.08 -13.15 16 12 N -0.59 -12.23 2.75 -175.26 -0.48 -12.71 16 13 C 0.08 1.29 9.24 59.85 0.55 1.85 16 14 C 0.23 5.67 2.23 -69.08 -0.15 5.52 16 15 H 0.06 1.69 5.95 -51.93 -0.31 1.39 16 16 C -0.16 -3.51 8.68 37.16 0.32 -3.19 16 17 C -0.53 -14.66 8.57 -34.44 -0.30 -14.96 16 18 H 0.08 2.33 7.58 -52.49 -0.40 1.93 16 19 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 20 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 21 Si 0.88 22.25 24.38 -169.99 -4.14 18.11 16 22 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.26 -6.62 6.53 56.52 0.37 -6.25 16 25 C -0.24 -3.17 11.02 29.15 0.32 -2.85 16 26 S 0.07 0.81 22.40 -107.50 -2.41 -1.60 16 27 C -0.06 -0.82 9.68 -39.19 -0.38 -1.20 16 28 C -0.12 -1.28 9.68 -39.64 -0.38 -1.67 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.12 1.11 7.30 -52.49 -0.38 0.72 16 34 H 0.11 1.27 7.27 -51.93 -0.38 0.89 16 35 H 0.11 1.32 8.11 -51.93 -0.42 0.89 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 38 H 0.09 1.52 7.02 -51.93 -0.36 1.15 16 39 H 0.05 1.12 3.28 -51.93 -0.17 0.95 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 1.13 7.67 -51.93 -0.40 0.73 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.14 1.96 7.82 -52.48 -0.41 1.55 16 45 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -35.32 380.36 -9.18 -44.51 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.12 Total: 0.99 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.54 Total: -8.07 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.22 Total: -46.52 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.41 Total: -1.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.32 -9.18 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.292 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds