Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38353 * 119.85698 * 2 1 4 4 C 1.37966 * 120.14376 * 179.97438 * 3 2 1 5 5 C 1.39549 * 119.85459 * 359.97438 * 4 3 2 6 6 C 1.47875 * 120.13958 * 179.97438 * 5 4 3 7 7 N 1.30222 * 125.46982 * 179.97438 * 6 5 4 8 8 C 1.31307 * 117.04123 * 180.02562 * 7 6 5 9 9 C 1.50698 * 122.07579 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47490 * 305.02895 * 9 8 7 11 11 O 1.21287 * 119.99868 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00122 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00035 * 359.97438 * 12 10 9 14 14 C 1.46506 * 120.00092 * 179.97438 * 12 10 9 15 15 H 1.08996 * 109.46660 * 0.02562 * 14 12 10 16 16 C 1.52997 * 109.47289 * 239.99940 * 14 12 10 17 17 C 1.50699 * 109.46928 * 120.00010 * 14 12 10 18 18 H 1.08003 * 119.99962 * 0.02562 * 17 14 12 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99500 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00390 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46921 * 60.00425 * 21 19 17 23 23 H 1.48496 * 109.46933 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46946 * 300.00108 * 21 19 17 25 25 C 1.33727 * 115.84775 * 0.25162 * 8 7 6 26 26 S 1.76180 * 125.47297 * 0.04522 * 6 5 4 27 27 C 1.39540 * 119.71760 * 0.27387 * 5 4 3 28 28 C 1.37968 * 119.85375 * 359.44822 * 27 5 4 29 29 H 1.08998 * 109.46672 * 90.00365 * 1 2 3 30 30 H 1.09003 * 109.46805 * 210.00226 * 1 2 3 31 31 H 1.08998 * 109.46984 * 330.00097 * 1 2 3 32 32 H 1.07999 * 119.92499 * 359.95378 * 3 2 1 33 33 H 1.08007 * 120.07031 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47139 * 185.02400 * 9 8 7 35 35 H 1.09005 * 109.47114 * 65.02809 * 9 8 7 36 36 H 1.08999 * 109.46723 * 270.00200 * 13 12 10 37 37 H 1.08997 * 109.46979 * 29.99903 * 13 12 10 38 38 H 1.09005 * 109.46961 * 150.00254 * 13 12 10 39 39 H 1.09002 * 109.47153 * 179.97438 * 16 14 12 40 40 H 1.09001 * 109.46832 * 60.00146 * 16 14 12 41 41 H 1.09004 * 109.47261 * 300.00128 * 16 14 12 42 42 H 0.97002 * 119.99804 * 180.02562 * 20 19 17 43 43 H 1.07994 * 125.89589 * 179.73484 * 25 8 7 44 44 H 1.08009 * 120.07414 * 179.70367 * 27 5 4 45 45 H 1.08010 * 119.92964 * 180.27541 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.2761 0.0000 0.0016 6 6 5.7549 0.0000 0.0016 7 7 6.5106 -1.0605 0.0030 8 6 7.8094 -0.8680 0.0033 9 6 8.7883 -2.0138 0.0055 10 6 8.4940 -2.9237 1.1701 11 8 7.5798 -2.6668 1.9245 12 7 9.2468 -4.0229 1.3735 13 6 10.3509 -4.3336 0.4619 14 6 8.9611 -4.9072 2.5061 15 1 8.1115 -4.5170 3.0663 16 6 10.1862 -4.9777 3.4198 17 6 8.6349 -6.2872 1.9960 18 1 8.6402 -6.4858 0.9344 19 6 8.3295 -7.2963 2.8845 20 7 8.3225 -7.0543 4.1772 21 14 7.9244 -9.0068 2.2523 22 1 9.0814 -9.5392 1.4887 23 1 7.6337 -9.9028 3.4002 24 1 6.7354 -8.9378 1.3653 25 6 8.2097 0.4080 0.0074 26 16 6.7772 1.4349 0.0015 27 6 3.5755 -1.2067 -0.0036 28 6 2.1958 -1.1999 0.0017 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6522 2.1331 -0.0008 33 1 4.1119 2.1442 0.0010 34 1 9.8026 -1.6250 0.0953 35 1 8.6948 -2.5733 -0.9253 36 1 9.9844 -4.9579 -0.3530 37 1 10.7579 -3.4078 0.0555 38 1 11.1315 -4.8663 1.0050 39 1 9.9735 -5.6353 4.2627 40 1 10.4222 -3.9795 3.7887 41 1 11.0357 -5.3681 2.8592 42 1 8.1080 -7.7643 4.8024 43 1 9.2340 0.7502 0.0122 44 1 4.1120 -2.1441 -0.0077 45 1 1.6522 -2.1332 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075582817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = 33.318419 kcal Electronic energy + Delta-G solvation = -26666.651793 eV Core-core repulsion = 22968.906974 eV Total energy + Delta-G solvation = -3697.744819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.11152 -39.30139 -38.39012 -35.22139 -33.76097 -32.86110 -31.49540 -31.08844 -29.59269 -27.90862 -27.38501 -26.03485 -25.16394 -23.99362 -22.92680 -21.65945 -20.81698 -19.21184 -18.55438 -17.63023 -16.71293 -16.34377 -16.14071 -15.42742 -15.29761 -15.27526 -14.71423 -14.44172 -14.35645 -14.06786 -13.80406 -13.58551 -13.26888 -13.08948 -12.72046 -12.67482 -12.46593 -12.37941 -12.16048 -11.88272 -11.60297 -11.51899 -11.39861 -11.25722 -11.10413 -11.01523 -10.78205 -10.63330 -10.21814 -10.12073 -9.72579 -9.54605 -9.16910 -9.10347 -9.06908 -8.83129 -8.38129 -8.05433 -7.51087 -6.02917 -4.10593 0.25549 1.28939 1.32427 1.48236 1.69948 2.93142 3.30457 3.35394 3.36951 3.49155 3.71872 3.94016 4.08711 4.43901 4.62436 4.70667 4.84217 4.88403 5.11705 5.13202 5.24335 5.26462 5.27958 5.34257 5.36753 5.51150 5.55080 5.62543 5.72941 5.79507 5.85201 5.94090 6.08379 6.11050 6.31096 6.32786 6.40647 6.45476 6.79690 6.81122 6.85605 7.10017 7.49467 7.57692 7.76287 7.88159 8.06611 8.24978 8.59669 8.89045 9.15251 9.55836 11.02405 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.002943 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.222715 B = 9513.143357 C =11555.085829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.075 4.075 3 C -0.123 4.123 4 C -0.095 4.095 5 C -0.028 4.028 6 C 0.120 3.880 7 N -0.426 5.426 8 C 0.102 3.898 9 C -0.072 4.072 10 C 0.508 3.492 11 O -0.534 6.534 12 N -0.597 5.597 13 C 0.086 3.914 14 C 0.260 3.740 15 H 0.062 0.938 16 C -0.147 4.147 17 C -0.523 4.523 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.249 4.249 26 S 0.062 5.938 27 C -0.061 4.061 28 C -0.122 4.122 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.010 0.990 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.178 0.822 44 H 0.140 0.860 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 17.756 -11.419 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.116 4.116 5 C -0.032 4.032 6 C -0.156 4.156 7 N -0.138 5.138 8 C -0.031 4.031 9 C -0.115 4.115 10 C 0.293 3.707 11 O -0.411 6.411 12 N -0.329 5.329 13 C -0.058 4.058 14 C 0.159 3.841 15 H 0.080 0.920 16 C -0.205 4.205 17 C -0.562 4.562 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.388 4.388 26 S 0.318 5.682 27 C -0.083 4.083 28 C -0.140 4.140 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.029 0.971 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.195 0.805 44 H 0.158 0.842 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.990 18.386 -10.814 22.446 hybrid contribution 0.758 -1.680 -0.298 1.867 sum -6.232 16.705 -11.112 21.009 Atomic orbital electron populations 1.20828 0.91016 1.03002 1.02411 1.20085 0.96258 0.93152 0.98115 1.20844 0.93398 0.97741 1.02091 1.21097 0.94485 0.96439 0.99561 1.17823 0.86881 0.94383 1.04112 1.25785 0.97012 0.89194 1.03578 1.66249 1.04123 1.30032 1.13441 1.19580 0.89843 0.93312 1.00397 1.20412 0.97100 0.93615 1.00364 1.19997 0.82855 0.81888 0.85914 1.90685 1.30066 1.73124 1.47246 1.48209 1.30788 1.24212 1.29702 1.21557 0.90615 0.99611 0.93988 1.18895 0.94997 0.87810 0.82350 0.91972 1.22094 0.97965 0.98469 1.01981 1.21293 1.47558 0.94072 0.93299 0.92380 1.24892 0.95151 0.98964 0.94806 1.69874 1.48550 1.33191 1.01138 0.86563 0.78899 0.83680 0.78286 1.20266 1.21200 1.20244 1.26674 1.02840 0.95299 1.13952 1.84612 0.99113 1.13559 1.70906 1.21397 0.93833 0.97990 0.95045 1.21069 0.93834 0.97880 1.01189 0.91001 0.91270 0.91451 0.85556 0.85867 0.87910 0.87656 0.93329 0.93075 0.90882 0.88856 0.97070 0.95132 0.92693 0.80452 0.84234 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.01 36.00 0.36 -0.45 16 2 C -0.07 -0.75 5.89 -104.54 -0.62 -1.36 16 3 C -0.12 -1.19 9.68 -39.64 -0.38 -1.58 16 4 C -0.10 -1.07 9.61 -39.19 -0.38 -1.45 16 5 C -0.03 -0.40 5.87 -104.98 -0.62 -1.01 16 6 C 0.12 1.87 7.35 -14.29 -0.11 1.77 16 7 N -0.43 -7.73 9.22 -7.55 -0.07 -7.80 16 8 C 0.10 1.66 5.61 -84.40 -0.47 1.18 16 9 C -0.07 -1.11 4.72 -29.04 -0.14 -1.25 16 10 C 0.51 10.85 7.63 -10.99 -0.08 10.76 16 11 O -0.53 -13.83 14.75 5.55 0.08 -13.75 16 12 N -0.60 -12.94 2.75 -175.26 -0.48 -13.42 16 13 C 0.09 1.43 9.48 59.85 0.57 2.00 16 14 C 0.26 6.78 2.63 -69.08 -0.18 6.60 16 15 H 0.06 1.90 6.90 -51.93 -0.36 1.55 16 16 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 17 C -0.52 -14.44 8.37 -34.44 -0.29 -14.73 16 18 H 0.06 1.58 7.65 -52.48 -0.40 1.18 16 19 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 21 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C -0.25 -3.28 11.02 29.15 0.32 -2.95 16 26 S 0.06 0.76 22.40 -107.50 -2.41 -1.64 16 27 C -0.06 -0.87 9.68 -39.19 -0.38 -1.25 16 28 C -0.12 -1.41 9.68 -39.64 -0.38 -1.79 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.12 1.16 7.30 -52.48 -0.38 0.78 16 34 H 0.10 1.22 7.27 -51.93 -0.38 0.84 16 35 H 0.11 1.46 8.11 -51.93 -0.42 1.04 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 38 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 39 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.14 2.21 7.82 -52.48 -0.41 1.80 16 45 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -34.32 386.50 -10.18 -44.50 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.19 Total: 1.99 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.54 Total: -7.07 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.08 Total: -46.23 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.41 Total: -1.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.32 -10.18 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.820 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds