Wall clock time and date at job start Tue Mar 31 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48498 * 109.46877 * 239.99953 * 3 2 1 5 5 H 1.48498 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46840 * 120.00188 * 3 2 1 7 7 C 1.39939 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99763 * 190.24815 * 7 2 1 9 9 C 1.41435 * 120.00216 * 10.25105 * 7 2 1 10 10 C 1.40782 * 120.17678 * 209.01687 * 9 7 2 11 11 C 1.37714 * 120.03746 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41524 * 359.97438 * 11 10 9 13 13 C 1.39882 * 120.35713 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02356 * 179.97438 * 13 12 11 15 15 O 1.21548 * 119.99891 * 219.84959 * 14 13 12 16 16 N 1.34769 * 119.99751 * 39.85611 * 14 13 12 17 17 C 1.47079 * 120.87975 * 185.58013 * 16 14 13 18 18 C 1.53236 * 108.52606 * 231.20438 * 17 16 14 19 19 N 1.46906 * 109.33974 * 306.17284 * 18 17 16 20 20 C 1.46894 * 110.99829 * 187.24849 * 19 18 17 21 21 H 1.08999 * 110.05842 * 46.15091 * 20 19 18 22 22 C 1.54259 * 110.03638 * 284.73106 * 20 19 18 23 23 C 1.54890 * 104.19963 * 217.10754 * 22 20 19 24 24 C 1.54891 * 102.74609 * 37.94129 * 23 22 20 25 25 C 1.53881 * 110.03182 * 167.56492 * 20 19 18 26 26 H 1.09000 * 110.03627 * 238.57353 * 25 20 19 27 27 O 1.42898 * 110.06917 * 359.97438 * 25 20 19 28 28 C 1.46901 * 111.26579 * 63.09959 * 19 18 17 29 29 C 1.47078 * 120.88433 * 5.60166 * 16 14 13 30 30 C 1.39027 * 119.94877 * 0.27248 * 13 12 11 31 31 H 0.97001 * 119.99685 * 359.97438 * 1 2 3 32 32 H 1.08002 * 119.98243 * 0.02562 * 10 9 7 33 33 H 1.08006 * 119.79114 * 179.97438 * 11 10 9 34 34 H 1.07998 * 119.81900 * 179.97438 * 12 11 10 35 35 H 1.09007 * 109.62572 * 111.49411 * 17 16 14 36 36 H 1.08999 * 109.79142 * 351.01528 * 17 16 14 37 37 H 1.08995 * 109.49474 * 186.21061 * 18 17 16 38 38 H 1.09007 * 109.51225 * 66.14117 * 18 17 16 39 39 H 1.09007 * 110.48980 * 98.42682 * 22 20 19 40 40 H 1.09004 * 110.59728 * 335.84312 * 22 20 19 41 41 H 1.09003 * 110.75369 * 279.62741 * 23 22 20 42 42 H 1.09005 * 110.91567 * 156.32756 * 23 22 20 43 43 H 1.08997 * 110.48580 * 203.37792 * 24 23 22 44 44 H 1.09000 * 110.48602 * 80.73932 * 24 23 22 45 45 H 0.96708 * 114.00140 * 179.27924 * 27 25 20 46 46 H 1.08998 * 109.49313 * 56.86284 * 28 19 18 47 47 H 1.09003 * 109.48450 * 176.93774 * 28 19 18 48 48 H 1.09002 * 109.63168 * 248.50103 * 29 16 14 49 49 H 1.08998 * 109.62923 * 8.89231 * 29 16 14 50 50 H 1.08006 * 120.20697 * 179.70546 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0750 -1.2195 0.1659 9 6 1.3177 -2.4269 -0.2191 10 6 1.7957 -3.6241 0.3470 11 6 1.1217 -4.8055 0.1319 12 6 -0.0272 -4.8263 -0.6390 13 6 -0.5177 -3.6466 -1.2086 14 6 -1.7460 -3.6774 -2.0318 15 8 -1.8179 -3.0046 -3.0415 16 7 -2.7856 -4.4514 -1.6622 17 6 -3.9671 -4.5917 -2.5268 18 6 -5.2190 -4.3063 -1.6906 19 7 -5.2151 -5.1665 -0.4997 20 6 -6.4792 -5.0484 0.2392 21 1 -7.3217 -5.1044 -0.4501 22 6 -6.5168 -3.7141 1.0123 23 6 -7.2316 -4.0648 2.3409 24 6 -6.6789 -5.4751 2.6644 25 6 -6.5824 -6.1682 1.2896 26 1 -7.4749 -6.7676 1.1101 27 8 -5.4189 -6.9963 1.2395 28 6 -4.0680 -4.8692 0.3685 29 6 -2.7689 -5.1777 -0.3834 30 6 0.1537 -2.4463 -1.0055 31 1 -0.4850 0.8401 0.0004 32 1 2.6915 -3.6159 0.9502 33 1 1.4921 -5.7217 0.5677 34 1 -0.5480 -5.7583 -0.8018 35 1 -4.0137 -5.6068 -2.9212 36 1 -3.9076 -3.8811 -3.3512 37 1 -6.1087 -4.5128 -2.2854 38 1 -5.2213 -3.2603 -1.3837 39 1 -7.0862 -2.9679 0.4581 40 1 -5.5061 -3.3547 1.2062 41 1 -8.3123 -4.0960 2.2015 42 1 -6.9650 -3.3562 3.1251 43 1 -7.3667 -6.0142 3.3159 44 1 -5.6937 -5.4023 3.1250 45 1 -5.4195 -7.7151 1.8865 46 1 -4.0859 -3.8155 0.6468 47 1 -4.1231 -5.4840 1.2670 48 1 -2.7005 -6.2492 -0.5717 49 1 -1.9135 -4.8548 0.2100 50 1 -0.2187 -1.5338 -1.4473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075606319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:22 Heat of formation + Delta-G solvation = -43.089161 kcal Electronic energy + Delta-G solvation = -31314.095198 eV Core-core repulsion = 27306.117321 eV Total energy + Delta-G solvation = -4007.977877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.33126 -39.17280 -37.24968 -36.57436 -35.13736 -33.84045 -33.33800 -31.21050 -29.89863 -29.45118 -28.45834 -27.84752 -25.47355 -25.33487 -23.59109 -22.57359 -21.34448 -20.95493 -20.47578 -19.68664 -18.42118 -17.81340 -17.34664 -16.18240 -15.88064 -15.66336 -15.15807 -15.02456 -14.87479 -14.76837 -14.61562 -14.30314 -14.11047 -13.80994 -13.50386 -13.17416 -12.81867 -12.55983 -12.51329 -12.42279 -12.13460 -11.97621 -11.61095 -11.52682 -11.40452 -11.34680 -11.18895 -11.12264 -11.05903 -11.04363 -10.61578 -10.52792 -10.49763 -10.42395 -10.03780 -9.86165 -9.67749 -9.24253 -8.92744 -8.37377 -7.96607 -7.56286 -7.42526 -6.73897 -4.42150 2.34134 2.83606 3.07961 3.10272 3.16203 3.46734 3.70037 3.87449 3.94047 4.19444 4.35562 4.37755 4.63505 4.76008 4.99015 5.04145 5.10985 5.21771 5.24057 5.27359 5.38989 5.45989 5.50150 5.57120 5.59572 5.59828 5.72245 5.73280 5.77004 5.87457 5.96230 6.00348 6.09854 6.11740 6.15498 6.28700 6.34547 6.38413 6.70824 6.94999 7.00572 7.04402 7.10112 7.20938 7.24244 7.40921 7.62372 7.70449 7.82447 7.92085 8.05945 8.19002 8.52185 8.83430 8.84776 8.93008 10.20626 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003090 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.355107 B = 9058.841094 C = 9488.080561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.079 0.921 9 C 0.101 3.899 10 C -0.207 4.207 11 C -0.101 4.101 12 C -0.212 4.212 13 C -0.123 4.123 14 C 0.571 3.429 15 O -0.553 6.553 16 N -0.615 5.615 17 C 0.120 3.880 18 C 0.039 3.961 19 N -0.509 5.509 20 C 0.088 3.912 21 H 0.086 0.914 22 C -0.168 4.168 23 C -0.118 4.118 24 C -0.161 4.161 25 C 0.110 3.890 26 H 0.057 0.943 27 O -0.536 6.536 28 C 0.041 3.959 29 C 0.110 3.890 30 C -0.093 4.093 31 H 0.282 0.718 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.366 0.634 46 H 0.035 0.965 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.109 0.891 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.409 -10.165 5.106 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.099 3.901 10 C -0.227 4.227 11 C -0.120 4.120 12 C -0.232 4.232 13 C -0.127 4.127 14 C 0.362 3.638 15 O -0.431 6.431 16 N -0.349 5.349 17 C -0.004 4.004 18 C -0.090 4.090 19 N -0.233 5.233 20 C -0.021 4.021 21 H 0.104 0.896 22 C -0.207 4.207 23 C -0.156 4.156 24 C -0.199 4.199 25 C 0.050 3.950 26 H 0.075 0.925 27 O -0.340 6.340 28 C -0.087 4.087 29 C -0.013 4.013 30 C -0.113 4.113 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.212 0.788 46 H 0.053 0.947 47 H 0.122 0.878 48 H 0.086 0.914 49 H 0.127 0.873 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.434 -9.707 3.903 18.645 hybrid contribution -0.142 1.227 0.876 1.514 sum -15.575 -8.480 4.779 18.367 Atomic orbital electron populations 1.69749 1.07470 1.29402 1.35999 1.25908 0.94853 1.01356 0.92322 0.86285 0.79960 0.80092 0.79898 1.18800 1.20335 1.19025 1.19535 0.95842 0.90290 1.43518 0.90264 1.17576 0.91380 0.92461 0.88692 1.21163 1.02583 0.93428 1.05479 1.20461 0.95644 0.96684 0.99171 1.20512 1.00373 0.95725 1.06543 1.19449 0.95558 0.95823 1.01834 1.18953 0.83127 0.77058 0.84615 1.90667 1.82422 1.42674 1.27342 1.48034 1.17603 1.48463 1.20835 1.21520 0.83527 1.01930 0.93373 1.22515 0.98519 0.95261 0.92700 1.62007 1.01417 1.52966 1.06870 1.22410 0.93283 0.92344 0.94079 0.89591 1.23199 1.02341 0.98311 0.96842 1.22310 0.99618 0.96363 0.97334 1.23195 1.02098 0.96895 0.97749 1.22417 0.88231 0.91031 0.93316 0.92492 1.86798 1.40946 1.44880 1.61353 1.22743 0.89718 0.99318 0.96936 1.22160 0.98197 0.96380 0.84524 1.21548 0.96405 0.95575 0.97788 0.90739 0.88603 0.88788 0.88421 0.91465 0.89136 0.90318 0.94497 0.91508 0.89916 0.91495 0.91338 0.91500 0.90385 0.78801 0.94697 0.87755 0.91401 0.87344 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.15 10.84 55.55 0.60 -20.55 16 2 C 0.07 1.84 5.26 -17.34 -0.09 1.75 16 3 Si 0.91 19.01 29.57 -169.99 -5.03 13.98 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.21 9.06 -37.73 -0.34 -12.55 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 9 C 0.10 2.68 5.54 -106.87 -0.59 2.09 16 10 C -0.21 -4.90 9.78 -38.81 -0.38 -5.28 16 11 C -0.10 -2.16 10.01 -39.72 -0.40 -2.55 16 12 C -0.21 -4.53 7.41 -38.92 -0.29 -4.82 16 13 C -0.12 -2.97 5.13 -105.04 -0.54 -3.51 16 14 C 0.57 13.11 7.33 -12.31 -0.09 13.02 16 15 O -0.55 -14.25 16.37 5.32 0.09 -14.16 16 16 N -0.62 -11.38 3.01 -173.56 -0.52 -11.90 16 17 C 0.12 1.88 6.61 -3.60 -0.02 1.85 16 18 C 0.04 0.52 5.40 -3.70 -0.02 0.50 16 19 N -0.51 -6.49 4.05 -225.00 -0.91 -7.40 16 20 C 0.09 0.91 2.94 -66.60 -0.20 0.71 16 21 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16 22 C -0.17 -1.72 5.70 -25.08 -0.14 -1.86 16 23 C -0.12 -0.97 6.91 -24.74 -0.17 -1.14 16 24 C -0.16 -1.24 6.55 -25.07 -0.16 -1.40 16 25 C 0.11 0.95 3.95 -25.61 -0.10 0.85 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 O -0.54 -5.09 9.88 -35.23 -0.35 -5.44 16 28 C 0.04 0.58 4.35 -3.70 -0.02 0.56 16 29 C 0.11 1.79 5.00 -3.60 -0.02 1.77 16 30 C -0.09 -2.50 8.23 -38.44 -0.32 -2.81 16 31 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 32 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.10 1.85 6.49 -52.49 -0.34 1.51 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.52 7.05 -51.93 -0.37 1.15 16 37 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 38 H 0.04 0.54 7.85 -51.92 -0.41 0.14 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.04 5.22 -51.93 -0.27 0.77 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 45 H 0.37 2.04 9.11 45.56 0.41 2.45 16 46 H 0.04 0.56 6.02 -51.93 -0.31 0.24 16 47 H 0.10 1.38 5.63 -51.93 -0.29 1.09 16 48 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 49 H 0.11 1.95 4.89 -51.93 -0.25 1.69 16 50 H 0.13 3.75 6.23 -52.48 -0.33 3.42 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -30.62 381.85 -11.00 -41.62 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.75 Total: 10.93 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.89 Total: -12.83 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.83 Total: -39.84 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.26 Total: -19.61 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.62 -11.00 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075606319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.472 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds