Wall clock time and date at job start Tue Mar 31 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 120.00012 * 2 1 4 4 H 1.48500 * 109.47160 * 239.99870 * 3 2 1 5 5 H 1.48495 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47350 * 119.99920 * 3 2 1 7 7 C 1.39937 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00189 * 195.67849 * 7 2 1 9 9 C 1.41444 * 119.99718 * 15.67412 * 7 2 1 10 10 C 1.40784 * 120.17614 * 29.08476 * 9 7 2 11 11 C 1.37711 * 120.03659 * 179.97438 * 10 9 7 12 12 C 1.38364 * 120.41559 * 359.97438 * 11 10 9 13 13 C 1.39886 * 120.35902 * 0.27488 * 12 11 10 14 14 C 1.47881 * 120.02706 * 179.70467 * 13 12 11 15 15 O 1.21551 * 120.00181 * 40.84673 * 14 13 12 16 16 N 1.34780 * 120.00065 * 220.84966 * 14 13 12 17 17 C 1.47082 * 120.87748 * 5.14338 * 16 14 13 18 18 C 1.53700 * 108.27660 * 128.75687 * 17 16 14 19 19 N 1.46897 * 109.25739 * 54.07714 * 18 17 16 20 20 C 1.46902 * 110.99825 * 172.60994 * 19 18 17 21 21 H 1.09001 * 110.43722 * 66.83771 * 20 19 18 22 22 C 1.54887 * 110.48585 * 189.52771 * 20 19 18 23 23 C 1.54890 * 102.74561 * 156.62157 * 22 20 19 24 24 C 1.54266 * 104.19821 * 322.05473 * 23 22 20 25 25 C 1.53875 * 106.59514 * 23.61312 * 24 23 22 26 26 H 1.09006 * 110.02929 * 240.71271 * 25 24 23 27 27 O 1.42898 * 110.07304 * 119.30799 * 25 24 23 28 28 C 1.46898 * 111.27027 * 296.75685 * 19 18 17 29 29 C 1.47072 * 120.88255 * 185.41451 * 16 14 13 30 30 C 1.39037 * 119.94311 * 359.45031 * 13 12 11 31 31 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 32 32 H 1.07994 * 119.97878 * 359.97438 * 10 9 7 33 33 H 1.08008 * 119.78790 * 179.97438 * 11 10 9 34 34 H 1.08000 * 119.82063 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.62342 * 248.52157 * 17 16 14 36 36 H 1.08997 * 109.63027 * 9.09841 * 17 16 14 37 37 H 1.09002 * 109.64150 * 294.07346 * 18 17 16 38 38 H 1.08996 * 109.43963 * 173.96133 * 18 17 16 39 39 H 1.09002 * 110.75517 * 274.92978 * 22 20 19 40 40 H 1.08996 * 110.75521 * 38.30297 * 22 20 19 41 41 H 1.09003 * 110.48194 * 203.37500 * 23 22 20 42 42 H 1.09003 * 110.60425 * 80.79570 * 23 22 20 43 43 H 1.09001 * 110.03240 * 264.32775 * 24 23 22 44 44 H 1.08997 * 110.03144 * 142.89604 * 24 23 22 45 45 H 0.96704 * 114.00088 * 62.80475 * 27 25 24 46 46 H 1.09008 * 109.49163 * 303.14719 * 28 19 18 47 47 H 1.08998 * 109.51792 * 183.08450 * 28 19 18 48 48 H 1.08997 * 109.63090 * 350.90128 * 29 16 14 49 49 H 1.09002 * 109.62439 * 111.28204 * 29 16 14 50 50 H 1.08004 * 120.19895 * 180.27206 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0578 -1.2291 0.2533 9 6 1.3402 -2.4142 -0.3299 10 6 0.2406 -2.3944 -1.2087 11 6 -0.4071 -3.5668 -1.5289 12 6 0.0158 -4.7699 -0.9921 13 6 1.1033 -4.8085 -0.1130 14 6 1.5450 -6.0975 0.4615 15 8 1.5762 -7.0940 -0.2338 16 7 1.9131 -6.1675 1.7562 17 6 1.7770 -5.0025 2.6436 18 6 1.0232 -5.4450 3.9079 19 7 1.7091 -6.6005 4.5013 20 6 1.1256 -6.9469 5.8043 21 1 0.1063 -7.3124 5.6798 22 6 1.9991 -8.0030 6.5258 23 6 1.6284 -7.7933 8.0150 24 6 1.4697 -6.2651 8.1539 25 6 1.1500 -5.7270 6.7482 26 1 1.9224 -5.0257 6.4323 27 8 -0.1254 -5.0824 6.7481 28 6 1.6915 -7.7549 3.5931 29 6 2.4670 -7.4089 2.3175 30 6 1.7717 -3.6345 0.2159 31 1 -0.4850 0.8400 -0.0004 32 1 -0.0952 -1.4594 -1.6320 33 1 -1.2506 -3.5469 -2.2032 34 1 -0.4994 -5.6835 -1.2494 35 1 2.7654 -4.6309 2.9142 36 1 1.2147 -4.2190 2.1358 37 1 0.0019 -5.7227 3.6471 38 1 1.0052 -4.6247 4.6253 39 1 1.7359 -9.0095 6.2004 40 1 3.0583 -7.8068 6.3600 41 1 2.4283 -8.1541 8.6617 42 1 0.6913 -8.2973 8.2517 43 1 2.3973 -5.8251 8.5201 44 1 0.6518 -6.0352 8.8366 45 1 -0.1741 -4.3067 7.3235 46 1 0.6608 -8.0004 3.3368 47 1 2.1582 -8.6101 4.0819 48 1 2.3610 -8.2172 1.5940 49 1 3.5213 -7.2653 2.5541 50 1 2.6146 -3.6601 0.8908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075606320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:27 Heat of formation + Delta-G solvation = -58.965284 kcal Electronic energy + Delta-G solvation = -30817.257192 eV Core-core repulsion = 26808.590875 eV Total energy + Delta-G solvation = -4008.666317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.20631 -39.21069 -37.38101 -36.78072 -35.27509 -33.77866 -33.60882 -31.35494 -29.95407 -29.70266 -28.47367 -27.80471 -25.54842 -25.32801 -23.67350 -22.58886 -20.95613 -20.77446 -20.68512 -20.04142 -18.93981 -17.61283 -17.19835 -16.54333 -15.77347 -15.72493 -15.61804 -15.17291 -14.96726 -14.80032 -14.68596 -14.45372 -13.94329 -13.69563 -13.39899 -13.21762 -12.91709 -12.79469 -12.62605 -12.54460 -12.38148 -11.97795 -11.72278 -11.68670 -11.40142 -11.33315 -11.22257 -11.16490 -11.06359 -10.98264 -10.74398 -10.71478 -10.55365 -10.49882 -10.25562 -10.12029 -9.56896 -9.25502 -9.05646 -8.58712 -8.15682 -7.59586 -7.50134 -6.82240 -4.46359 2.29551 2.72496 3.03718 3.05735 3.12783 3.35990 3.57598 3.75718 3.89634 4.05026 4.22900 4.51806 4.56557 4.70165 4.91849 5.04919 5.09376 5.17468 5.20682 5.28889 5.31330 5.38190 5.44830 5.52018 5.55628 5.58442 5.63875 5.70424 5.70967 5.78768 5.84882 5.91245 6.00933 6.03736 6.11384 6.18222 6.28998 6.37396 6.73872 6.81860 6.88695 6.97929 7.00982 7.03322 7.15828 7.34599 7.48557 7.62336 7.78862 7.89458 7.95407 8.08202 8.48434 8.75095 8.77736 8.81824 10.14425 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.003181 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.504948 B = 8801.301291 C =10559.349474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.079 0.921 9 C 0.106 3.894 10 C -0.135 4.135 11 C -0.113 4.113 12 C -0.179 4.179 13 C -0.112 4.112 14 C 0.570 3.430 15 O -0.557 6.557 16 N -0.614 5.614 17 C 0.105 3.895 18 C 0.043 3.957 19 N -0.531 5.531 20 C 0.086 3.914 21 H 0.056 0.944 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.154 4.154 25 C 0.102 3.898 26 H 0.072 0.928 27 O -0.566 6.566 28 C 0.044 3.956 29 C 0.118 3.882 30 C -0.190 4.190 31 H 0.282 0.718 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.378 0.622 46 H 0.037 0.963 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -8.658 15.582 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.097 0.903 9 C 0.103 3.897 10 C -0.155 4.155 11 C -0.132 4.132 12 C -0.200 4.200 13 C -0.115 4.115 14 C 0.362 3.638 15 O -0.436 6.436 16 N -0.347 5.347 17 C -0.017 4.017 18 C -0.085 4.085 19 N -0.256 5.256 20 C -0.022 4.022 21 H 0.074 0.926 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.193 4.193 25 C 0.043 3.957 26 H 0.090 0.910 27 O -0.372 6.372 28 C -0.085 4.085 29 C -0.005 4.005 30 C -0.210 4.210 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.225 0.775 46 H 0.055 0.945 47 H 0.102 0.898 48 H 0.110 0.890 49 H 0.088 0.912 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.675 -9.367 14.872 17.778 hybrid contribution -0.414 1.078 0.451 1.239 sum 2.261 -8.289 15.323 17.567 Atomic orbital electron populations 1.69777 1.07485 1.29444 1.35702 1.25849 0.94734 1.01165 0.92217 0.86372 0.80114 0.80284 0.79996 1.18863 1.20376 1.18996 1.19477 0.97335 0.90751 1.42162 0.90339 1.17510 0.91388 0.91827 0.88947 1.21453 0.98536 0.96656 0.98821 1.20658 0.99349 0.92976 1.00183 1.20368 0.99824 0.96901 1.02875 1.19274 0.99687 0.91287 1.01262 1.18988 0.75137 0.89152 0.80562 1.90658 1.55171 1.37783 1.60010 1.48052 1.63982 1.12886 1.09801 1.22350 1.01380 0.88764 0.89253 1.22633 0.95791 0.93588 0.96484 1.62114 1.54789 1.06142 1.02543 1.22427 0.97033 0.94011 0.88767 0.92615 1.22516 1.00645 0.97877 0.94182 1.22255 1.01528 0.95573 0.96494 1.22847 1.02140 0.96835 0.97441 1.22484 0.85509 0.94061 0.93690 0.91036 1.86566 1.33350 1.46900 1.70335 1.22464 0.99565 0.93167 0.93254 1.21571 0.97073 0.87997 0.93894 1.21256 1.03305 0.91906 1.04508 0.90742 0.86453 0.88626 0.88616 0.91066 0.86584 0.94256 0.89184 0.91319 0.89968 0.91357 0.91559 0.91146 0.90978 0.77479 0.94461 0.89802 0.88970 0.91202 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.68 11.14 55.55 0.62 -19.06 16 2 C 0.08 1.86 5.15 -17.35 -0.09 1.77 16 3 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.47 -11.68 9.04 -37.73 -0.34 -12.02 16 8 H 0.08 1.88 7.89 -52.49 -0.41 1.47 16 9 C 0.11 2.65 5.52 -106.87 -0.59 2.06 16 10 C -0.14 -3.36 8.66 -38.81 -0.34 -3.69 16 11 C -0.11 -2.60 10.01 -39.73 -0.40 -3.00 16 12 C -0.18 -4.15 9.65 -38.92 -0.38 -4.52 16 13 C -0.11 -2.56 5.10 -105.04 -0.54 -3.10 16 14 C 0.57 12.21 7.32 -12.31 -0.09 12.12 16 15 O -0.56 -13.15 16.39 5.32 0.09 -13.07 16 16 N -0.61 -10.82 3.00 -173.28 -0.52 -11.34 16 17 C 0.11 1.72 5.06 -3.36 -0.02 1.70 16 18 C 0.04 0.62 5.27 -3.46 -0.02 0.60 16 19 N -0.53 -6.58 4.46 -224.07 -1.00 -7.58 16 20 C 0.09 0.93 2.32 -66.05 -0.15 0.78 16 21 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 22 C -0.11 -0.97 5.47 -24.74 -0.14 -1.10 16 23 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 24 C -0.15 -1.17 6.61 -25.61 -0.17 -1.34 16 25 C 0.10 0.99 2.86 -25.61 -0.07 0.92 16 26 H 0.07 0.73 7.44 -51.93 -0.39 0.35 16 27 O -0.57 -5.95 12.51 -35.23 -0.44 -6.39 16 28 C 0.04 0.55 5.50 -3.70 -0.02 0.53 16 29 C 0.12 1.71 6.61 -3.61 -0.02 1.68 16 30 C -0.19 -4.38 7.15 -38.44 -0.28 -4.66 16 31 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 32 H 0.12 2.99 6.42 -52.49 -0.34 2.65 16 33 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 34 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.12 2.18 4.93 -51.93 -0.26 1.93 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.23 5.99 -51.93 -0.31 0.92 16 39 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.51 7.96 -51.93 -0.41 0.10 16 45 H 0.38 2.45 9.11 45.56 0.42 2.87 16 46 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 47 H 0.08 0.84 6.87 -51.93 -0.36 0.48 16 48 H 0.09 1.41 7.04 -51.93 -0.37 1.05 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.10 2.21 6.61 -52.48 -0.35 1.87 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -29.12 388.16 -11.20 -40.32 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.96 Total: 10.70 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -3.81 Total: -12.32 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.90 Total: -37.97 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.35 Total: -19.45 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.12 -11.20 -40.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075606320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.647 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds