Wall clock time and date at job start Tue Mar 31 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86800 * 120.00249 * 2 1 4 4 H 1.48494 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00181 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00148 * 3 2 1 7 7 C 1.39933 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00097 * 196.88923 * 7 2 1 9 9 C 1.41437 * 120.00196 * 16.88995 * 7 2 1 10 10 C 1.40785 * 120.17881 * 205.31210 * 9 7 2 11 11 C 1.37715 * 120.04051 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.40908 * 359.74125 * 11 10 9 13 13 C 1.39882 * 120.36115 * 0.51481 * 12 11 10 14 14 C 1.47879 * 120.02448 * 179.76100 * 13 12 11 15 15 O 1.21556 * 119.99860 * 148.16363 * 14 13 12 16 16 N 1.34774 * 120.00503 * 327.88930 * 14 13 12 17 17 C 1.47078 * 120.88257 * 174.21740 * 16 14 13 18 18 C 1.53698 * 108.27836 * 128.75478 * 17 16 14 19 19 N 1.46908 * 109.25572 * 54.08012 * 18 17 16 20 20 C 1.46896 * 110.99680 * 172.60902 * 19 18 17 21 21 H 1.09002 * 110.01743 * 182.91225 * 20 19 18 22 22 C 1.54264 * 110.03328 * 61.46957 * 20 19 18 23 23 C 1.54895 * 104.19468 * 217.10211 * 22 20 19 24 24 C 1.54887 * 102.74876 * 37.94396 * 23 22 20 25 25 C 1.53871 * 110.03595 * 304.30108 * 20 19 18 26 26 H 1.09006 * 110.02861 * 0.02562 * 25 20 19 27 27 O 1.42898 * 110.03569 * 238.57418 * 25 20 19 28 28 C 1.46897 * 111.26590 * 296.75905 * 19 18 17 29 29 C 1.47082 * 120.87805 * 354.49250 * 16 14 13 30 30 C 1.39030 * 119.94476 * 359.49050 * 13 12 11 31 31 H 0.96998 * 119.99444 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.98258 * 0.04776 * 10 9 7 33 33 H 1.07999 * 119.79686 * 180.02562 * 11 10 9 34 34 H 1.08004 * 119.81894 * 180.25733 * 12 11 10 35 35 H 1.08999 * 109.62596 * 248.52058 * 17 16 14 36 36 H 1.08999 * 109.63111 * 9.09787 * 17 16 14 37 37 H 1.09002 * 109.64488 * 294.07895 * 18 17 16 38 38 H 1.09001 * 109.44381 * 173.95563 * 18 17 16 39 39 H 1.08996 * 110.48650 * 335.77839 * 22 20 19 40 40 H 1.09002 * 110.48696 * 98.42825 * 22 20 19 41 41 H 1.08997 * 110.75514 * 279.62794 * 23 22 20 42 42 H 1.08998 * 110.91502 * 156.32978 * 23 22 20 43 43 H 1.08993 * 110.48708 * 203.38012 * 24 23 22 44 44 H 1.09002 * 110.48750 * 80.73399 * 24 23 22 45 45 H 0.96703 * 114.00308 * 179.97438 * 27 25 20 46 46 H 1.08999 * 109.49615 * 303.14311 * 28 19 18 47 47 H 1.09005 * 109.49025 * 183.06737 * 28 19 18 48 48 H 1.09000 * 109.63109 * 350.89550 * 29 16 14 49 49 H 1.09000 * 109.62637 * 111.28091 * 29 16 14 50 50 H 1.07999 * 120.19745 * 180.27196 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0530 -1.2320 0.2723 9 6 1.3465 -2.4105 -0.3548 10 6 1.8168 -3.6475 0.1254 11 6 1.1709 -4.8129 -0.2228 12 6 0.0550 -4.7778 -1.0402 13 6 -0.4237 -3.5587 -1.5313 14 6 -1.6138 -3.5303 -2.4087 15 8 -2.3677 -2.5773 -2.3796 16 7 -1.8595 -4.5586 -3.2446 17 6 -3.1001 -4.6109 -4.0327 18 6 -2.7270 -4.8565 -5.5034 19 7 -1.8824 -6.0550 -5.5952 20 6 -1.6472 -6.4270 -6.9967 21 1 -1.0629 -7.3459 -7.0458 22 6 -0.9064 -5.2888 -7.7284 23 6 -1.5241 -5.2851 -9.1488 24 6 -3.0180 -5.5870 -8.8727 25 6 -2.9897 -6.6166 -7.7242 26 1 -3.8158 -6.4322 -7.0374 27 8 -3.0775 -7.9415 -8.2524 28 6 -0.6130 -5.8684 -4.8798 29 6 -0.8967 -5.6612 -3.3883 30 6 0.2169 -2.3731 -1.1893 31 1 -0.4849 0.8401 -0.0004 32 1 2.6845 -3.6826 0.7676 33 1 1.5348 -5.7597 0.1482 34 1 -0.4467 -5.6972 -1.3039 35 1 -3.7297 -5.4238 -3.6709 36 1 -3.6320 -3.6638 -3.9418 37 1 -2.1814 -3.9964 -5.8916 38 1 -3.6348 -5.0057 -6.0880 39 1 -1.0863 -4.3354 -7.2317 40 1 0.1621 -5.4988 -7.7777 41 1 -1.0797 -6.0663 -9.7654 42 1 -1.4081 -4.3096 -9.6210 43 1 -3.4905 -6.0147 -9.7568 44 1 -3.5388 -4.6818 -8.5607 45 1 -3.9024 -8.1236 -8.7230 46 1 -0.0969 -4.9942 -5.2767 47 1 0.0122 -6.7515 -5.0120 48 1 0.0290 -5.4088 -2.8711 49 1 -1.3172 -6.5722 -2.9625 50 1 -0.1518 -1.4291 -1.5625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075606321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:33 Heat of formation + Delta-G solvation = -43.608548 kcal Electronic energy + Delta-G solvation = -30836.064272 eV Core-core repulsion = 26828.063873 eV Total energy + Delta-G solvation = -4008.000399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.48501 -39.28368 -37.37139 -36.78809 -35.21971 -33.89248 -33.34501 -31.48150 -29.94611 -29.49581 -28.58011 -28.01971 -25.54460 -25.45439 -23.77847 -22.60456 -21.49106 -21.05972 -20.61790 -19.65875 -18.54376 -17.79924 -17.29414 -16.43949 -16.02694 -15.71900 -15.57771 -15.23368 -14.98749 -14.81848 -14.80759 -14.60417 -13.83124 -13.66130 -13.29198 -13.18324 -12.88019 -12.85256 -12.63973 -12.54071 -12.42492 -12.07826 -11.82456 -11.68829 -11.51175 -11.47859 -11.28920 -11.16020 -11.08846 -10.93792 -10.79220 -10.69690 -10.66828 -10.31845 -10.11763 -10.06277 -9.68727 -9.25335 -8.92750 -8.58378 -8.14589 -7.61372 -7.50168 -6.79989 -4.42954 2.26340 2.77728 3.06214 3.10439 3.12346 3.35057 3.58902 3.77062 3.90268 3.94932 4.25742 4.49825 4.57824 4.64347 4.81562 4.98743 5.03919 5.08614 5.18228 5.22993 5.26122 5.31586 5.39821 5.42769 5.52642 5.54011 5.57287 5.65212 5.70598 5.72849 5.78152 5.85485 5.96628 5.99365 6.03922 6.12504 6.17319 6.31900 6.67531 6.83740 6.91007 6.95566 6.97752 7.04724 7.19677 7.37001 7.38810 7.65898 7.77233 7.87624 7.99893 8.15344 8.48676 8.78791 8.81387 8.88691 10.14054 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002630 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.460164 B =10645.152014 C =11160.474376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.101 3.899 10 C -0.212 4.212 11 C -0.097 4.097 12 C -0.227 4.227 13 C -0.123 4.123 14 C 0.567 3.433 15 O -0.544 6.544 16 N -0.617 5.617 17 C 0.118 3.882 18 C 0.034 3.966 19 N -0.528 5.528 20 C 0.089 3.911 21 H 0.098 0.902 22 C -0.160 4.160 23 C -0.117 4.117 24 C -0.159 4.159 25 C 0.103 3.897 26 H 0.070 0.930 27 O -0.563 6.563 28 C 0.041 3.959 29 C 0.099 3.901 30 C -0.098 4.098 31 H 0.284 0.716 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.376 0.624 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.122 0.878 49 H 0.069 0.931 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -11.017 -15.824 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.098 3.902 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.247 4.247 13 C -0.126 4.126 14 C 0.359 3.641 15 O -0.421 6.421 16 N -0.352 5.352 17 C -0.005 4.005 18 C -0.094 4.094 19 N -0.252 5.252 20 C -0.020 4.020 21 H 0.116 0.884 22 C -0.199 4.199 23 C -0.155 4.155 24 C -0.197 4.197 25 C 0.044 3.956 26 H 0.087 0.913 27 O -0.368 6.368 28 C -0.087 4.087 29 C -0.024 4.024 30 C -0.118 4.118 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.223 0.777 46 H 0.061 0.939 47 H 0.103 0.897 48 H 0.140 0.860 49 H 0.087 0.913 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.077 -10.759 -15.260 19.350 hybrid contribution 0.130 1.402 -0.639 1.546 sum -4.947 -9.358 -15.899 19.100 Atomic orbital electron populations 1.69818 1.07481 1.29629 1.33651 1.25978 0.94782 1.01524 0.92435 0.86249 0.80869 0.80907 0.78682 1.18347 1.19637 1.19885 1.19615 0.97872 0.90914 1.40499 0.90070 1.17586 0.91149 0.92486 0.88948 1.21112 1.03538 0.92831 1.05664 1.20467 0.96126 0.96740 0.98223 1.20633 1.01120 0.95218 1.07697 1.19422 0.96276 0.95385 1.01500 1.18987 0.85674 0.80557 0.78906 1.90702 1.49613 1.33299 1.68507 1.48023 1.20382 1.23131 1.43688 1.21648 0.87136 1.02753 0.88971 1.22693 0.97706 0.91573 0.97448 1.62166 1.16567 1.34894 1.11553 1.22257 0.94683 0.98412 0.86661 0.88435 1.23075 1.00494 0.99908 0.96426 1.22371 0.94871 1.01572 0.96696 1.23123 0.97818 0.99809 0.98931 1.22513 0.97857 0.81826 0.93399 0.91266 1.86514 1.43755 1.30744 1.75789 1.22559 0.90371 1.01096 0.94718 1.22486 0.95470 0.89670 0.94783 1.21529 0.96913 0.95793 0.97548 0.90494 0.88644 0.88816 0.87928 0.91380 0.88892 0.93812 0.89913 0.90818 0.91065 0.91172 0.91568 0.90981 0.90867 0.77680 0.93916 0.89690 0.86004 0.91299 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.78 10.96 55.55 0.61 -20.17 16 2 C 0.07 1.81 5.15 -17.34 -0.09 1.72 16 3 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.63 5.56 -106.87 -0.59 2.04 16 10 C -0.21 -4.94 9.78 -38.81 -0.38 -5.32 16 11 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 12 C -0.23 -4.69 7.40 -38.92 -0.29 -4.98 16 13 C -0.12 -2.87 5.38 -105.04 -0.57 -3.43 16 14 C 0.57 12.53 7.43 -12.32 -0.09 12.44 16 15 O -0.54 -13.79 16.19 5.32 0.09 -13.70 16 16 N -0.62 -10.63 3.00 -173.28 -0.52 -11.15 16 17 C 0.12 1.71 6.64 -3.36 -0.02 1.69 16 18 C 0.03 0.41 4.91 -3.46 -0.02 0.39 16 19 N -0.53 -6.12 4.63 -224.71 -1.04 -7.16 16 20 C 0.09 0.91 2.86 -66.60 -0.19 0.72 16 21 H 0.10 1.09 7.95 -51.93 -0.41 0.68 16 22 C -0.16 -1.54 5.19 -25.07 -0.13 -1.67 16 23 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 24 C -0.16 -1.19 6.56 -25.07 -0.16 -1.35 16 25 C 0.10 0.91 3.32 -25.61 -0.09 0.83 16 26 H 0.07 0.63 6.10 -51.93 -0.32 0.31 16 27 O -0.56 -5.06 13.21 -35.23 -0.47 -5.52 16 28 C 0.04 0.50 5.24 -3.70 -0.02 0.48 16 29 C 0.10 1.43 4.85 -3.60 -0.02 1.41 16 30 C -0.10 -2.57 8.23 -38.44 -0.32 -2.89 16 31 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 32 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.10 1.83 5.62 -52.48 -0.29 1.53 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 37 H 0.04 0.57 6.30 -51.93 -0.33 0.25 16 38 H 0.08 0.82 5.86 -51.93 -0.30 0.52 16 39 H 0.07 0.81 5.72 -51.93 -0.30 0.51 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.38 1.77 9.11 45.56 0.41 2.18 16 46 H 0.04 0.57 7.34 -51.93 -0.38 0.19 16 47 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 48 H 0.12 1.93 4.46 -51.93 -0.23 1.70 16 49 H 0.07 0.93 7.94 -51.93 -0.41 0.51 16 50 H 0.13 3.66 6.07 -52.49 -0.32 3.34 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -30.61 382.08 -11.08 -41.69 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.59 Total: 10.44 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -3.88 Total: -13.82 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.95 Total: -38.48 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.38 Total: -19.22 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.61 -11.08 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075606321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.921 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds