Wall clock time and date at job start Tue Mar 31 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86800 * 120.00249 * 2 1 4 4 H 1.48494 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00181 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00148 * 3 2 1 7 7 C 1.39933 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00097 * 196.88923 * 7 2 1 9 9 C 1.41437 * 120.00196 * 16.88995 * 7 2 1 10 10 C 1.40785 * 120.17881 * 205.31210 * 9 7 2 11 11 C 1.37715 * 120.04051 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.40908 * 359.74125 * 11 10 9 13 13 C 1.39882 * 120.36115 * 0.51481 * 12 11 10 14 14 C 1.47879 * 120.02448 * 179.76100 * 13 12 11 15 15 O 1.21556 * 119.99860 * 148.16363 * 14 13 12 16 16 N 1.34774 * 120.00503 * 327.88930 * 14 13 12 17 17 C 1.47078 * 120.88257 * 174.21740 * 16 14 13 18 18 C 1.53698 * 108.27836 * 128.75478 * 17 16 14 19 19 N 1.46908 * 109.25572 * 54.08012 * 18 17 16 20 20 C 1.46896 * 110.99680 * 172.60902 * 19 18 17 21 21 H 1.09002 * 110.01743 * 182.91225 * 20 19 18 22 22 C 1.54264 * 110.03328 * 61.46957 * 20 19 18 23 23 C 1.54895 * 104.19468 * 217.10211 * 22 20 19 24 24 C 1.54887 * 102.74876 * 37.94396 * 23 22 20 25 25 C 1.53871 * 110.03595 * 304.30108 * 20 19 18 26 26 H 1.09006 * 110.02861 * 0.02562 * 25 20 19 27 27 O 1.42898 * 110.03569 * 238.57418 * 25 20 19 28 28 C 1.46897 * 111.26590 * 296.75905 * 19 18 17 29 29 C 1.47082 * 120.87805 * 354.49250 * 16 14 13 30 30 C 1.39030 * 119.94476 * 359.49050 * 13 12 11 31 31 H 0.96998 * 119.99444 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.98258 * 0.04776 * 10 9 7 33 33 H 1.07999 * 119.79686 * 180.02562 * 11 10 9 34 34 H 1.08004 * 119.81894 * 180.25733 * 12 11 10 35 35 H 1.08999 * 109.62596 * 248.52058 * 17 16 14 36 36 H 1.08999 * 109.63111 * 9.09787 * 17 16 14 37 37 H 1.09002 * 109.64488 * 294.07895 * 18 17 16 38 38 H 1.09001 * 109.44381 * 173.95563 * 18 17 16 39 39 H 1.08996 * 110.48650 * 335.77839 * 22 20 19 40 40 H 1.09002 * 110.48696 * 98.42825 * 22 20 19 41 41 H 1.08997 * 110.75514 * 279.62794 * 23 22 20 42 42 H 1.08998 * 110.91502 * 156.32978 * 23 22 20 43 43 H 1.08993 * 110.48708 * 203.38012 * 24 23 22 44 44 H 1.09002 * 110.48750 * 80.73399 * 24 23 22 45 45 H 0.96703 * 114.00308 * 179.97438 * 27 25 20 46 46 H 1.08999 * 109.49615 * 303.14311 * 28 19 18 47 47 H 1.09005 * 109.49025 * 183.06737 * 28 19 18 48 48 H 1.09000 * 109.63109 * 350.89550 * 29 16 14 49 49 H 1.09000 * 109.62637 * 111.28091 * 29 16 14 50 50 H 1.07999 * 120.19745 * 180.27196 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0530 -1.2320 0.2723 9 6 1.3465 -2.4105 -0.3548 10 6 1.8168 -3.6475 0.1254 11 6 1.1709 -4.8129 -0.2228 12 6 0.0550 -4.7778 -1.0402 13 6 -0.4237 -3.5587 -1.5313 14 6 -1.6138 -3.5303 -2.4087 15 8 -2.3677 -2.5773 -2.3796 16 7 -1.8595 -4.5586 -3.2446 17 6 -3.1001 -4.6109 -4.0327 18 6 -2.7270 -4.8565 -5.5034 19 7 -1.8824 -6.0550 -5.5952 20 6 -1.6472 -6.4270 -6.9967 21 1 -1.0629 -7.3459 -7.0458 22 6 -0.9064 -5.2888 -7.7284 23 6 -1.5241 -5.2851 -9.1488 24 6 -3.0180 -5.5870 -8.8727 25 6 -2.9897 -6.6166 -7.7242 26 1 -3.8158 -6.4322 -7.0374 27 8 -3.0775 -7.9415 -8.2524 28 6 -0.6130 -5.8684 -4.8798 29 6 -0.8967 -5.6612 -3.3883 30 6 0.2169 -2.3731 -1.1893 31 1 -0.4849 0.8401 -0.0004 32 1 2.6845 -3.6826 0.7676 33 1 1.5348 -5.7597 0.1482 34 1 -0.4467 -5.6972 -1.3039 35 1 -3.7297 -5.4238 -3.6709 36 1 -3.6320 -3.6638 -3.9418 37 1 -2.1814 -3.9964 -5.8916 38 1 -3.6348 -5.0057 -6.0880 39 1 -1.0863 -4.3354 -7.2317 40 1 0.1621 -5.4988 -7.7777 41 1 -1.0797 -6.0663 -9.7654 42 1 -1.4081 -4.3096 -9.6210 43 1 -3.4905 -6.0147 -9.7568 44 1 -3.5388 -4.6818 -8.5607 45 1 -3.9024 -8.1236 -8.7230 46 1 -0.0969 -4.9942 -5.2767 47 1 0.0122 -6.7515 -5.0120 48 1 0.0290 -5.4088 -2.8711 49 1 -1.3172 -6.5722 -2.9625 50 1 -0.1518 -1.4291 -1.5625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075606321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:31 Heat of formation + Delta-G solvation = -64.614739 kcal Electronic energy + Delta-G solvation = -30836.975169 eV Core-core repulsion = 26828.063873 eV Total energy + Delta-G solvation = -4008.911296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.65411 -40.54944 -38.91338 -38.13019 -36.21560 -35.60418 -34.48915 -32.80476 -31.52551 -31.31088 -29.59877 -28.76702 -27.31899 -26.61036 -25.00874 -24.01005 -22.85606 -22.48176 -21.64377 -20.79915 -19.91313 -19.24473 -18.31568 -17.62183 -17.46510 -16.86903 -16.84498 -16.60774 -16.47628 -16.28174 -15.77413 -15.73547 -15.20850 -15.18193 -14.61817 -14.53050 -14.18082 -14.05825 -13.99661 -13.63073 -13.52308 -13.44097 -13.17331 -12.87462 -12.79530 -12.67213 -12.59049 -12.43904 -12.34518 -12.19779 -12.02456 -11.92662 -11.89809 -11.58229 -11.49274 -11.40286 -11.09933 -10.76655 -10.64686 -9.86142 -9.45456 -9.35927 -9.24764 -8.65825 -6.38701 0.44356 0.98664 1.35204 1.44887 1.51532 1.91312 2.04201 2.17948 2.66839 2.76796 3.26170 3.55564 3.62547 3.66202 3.81299 3.92678 3.95747 3.99399 4.15799 4.26178 4.28390 4.33119 4.43888 4.48085 4.51150 4.53824 4.62299 4.62608 4.68840 4.77578 4.79779 4.83660 4.89937 4.91968 4.98473 5.07665 5.08103 5.09639 5.13053 5.19901 5.29805 5.33086 5.49420 5.56942 5.83933 5.94225 5.94598 6.01135 6.04013 6.27601 6.37656 6.60810 6.87634 6.94090 6.94809 7.20247 8.30303 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002630 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.460164 B =10645.152014 C =11160.474376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.027 3.973 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.496 4.496 8 H 0.084 0.916 9 C 0.069 3.931 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.202 4.202 13 C -0.133 4.133 14 C 0.560 3.440 15 O -0.590 6.590 16 N -0.606 5.606 17 C 0.114 3.886 18 C 0.044 3.956 19 N -0.525 5.525 20 C 0.088 3.912 21 H 0.093 0.907 22 C -0.159 4.159 23 C -0.116 4.116 24 C -0.154 4.154 25 C 0.107 3.893 26 H 0.070 0.930 27 O -0.578 6.578 28 C 0.046 3.954 29 C 0.095 3.905 30 C -0.133 4.133 31 H 0.285 0.715 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.395 0.605 46 H 0.028 0.972 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.093 0.907 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 -13.879 -17.120 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.525 4.525 8 H 0.102 0.898 9 C 0.067 3.933 10 C -0.236 4.236 11 C -0.111 4.111 12 C -0.222 4.222 13 C -0.136 4.136 14 C 0.351 3.649 15 O -0.472 6.472 16 N -0.339 5.339 17 C -0.008 4.008 18 C -0.084 4.084 19 N -0.249 5.249 20 C -0.020 4.020 21 H 0.111 0.889 22 C -0.198 4.198 23 C -0.154 4.154 24 C -0.192 4.192 25 C 0.048 3.952 26 H 0.088 0.912 27 O -0.386 6.386 28 C -0.082 4.082 29 C -0.027 4.027 30 C -0.153 4.153 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.127 0.873 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.245 0.755 46 H 0.046 0.954 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.111 0.889 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.004 -13.694 -16.594 22.089 hybrid contribution 0.059 2.011 -0.318 2.037 sum -4.945 -11.683 -16.911 21.141 Atomic orbital electron populations 1.69929 1.09241 1.30450 1.35641 1.26878 0.95389 1.05013 0.91428 0.85153 0.79695 0.76124 0.78729 1.17310 1.19532 1.19026 1.19884 0.98218 0.92028 1.42410 0.89750 1.17928 0.91714 0.93973 0.89663 1.21413 1.03946 0.92800 1.05399 1.20938 0.95346 0.97727 0.97089 1.21073 1.00369 0.95365 1.05368 1.19695 0.96523 0.95609 1.01746 1.18923 0.85046 0.81237 0.79679 1.90670 1.51014 1.35329 1.70191 1.48063 1.21536 1.22219 1.42034 1.21859 0.86044 1.02614 0.90321 1.22598 0.98776 0.91392 0.95655 1.62175 1.15962 1.34153 1.12635 1.22286 0.95783 0.98122 0.85845 0.88905 1.23026 1.00562 0.98863 0.97330 1.22374 0.95395 1.01935 0.95674 1.23106 0.97297 0.99607 0.99166 1.22416 0.96735 0.82318 0.93741 0.91182 1.86466 1.45382 1.30590 1.76145 1.22492 0.91012 1.01573 0.93144 1.22638 0.94291 0.89150 0.96584 1.21314 0.98652 0.95644 0.99728 0.90415 0.87314 0.84216 0.84161 0.89358 0.90740 0.95273 0.87320 0.92409 0.91225 0.90864 0.91232 0.89300 0.90636 0.75514 0.95405 0.87319 0.87282 0.88927 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.92 10.96 21.82 0.24 -46.68 16 2 C 0.03 1.45 5.15 85.25 0.44 1.89 16 3 Si 0.98 39.82 29.59 68.60 2.03 41.85 16 4 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.50 -27.03 9.05 23.47 0.21 -26.82 16 8 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 9 C 0.07 3.77 5.56 -21.32 -0.12 3.65 16 10 C -0.22 -10.00 9.78 22.77 0.22 -9.78 16 11 C -0.09 -3.64 10.01 22.18 0.22 -3.42 16 12 C -0.20 -7.98 7.40 22.70 0.17 -7.81 16 13 C -0.13 -6.33 5.38 -20.14 -0.11 -6.44 16 14 C 0.56 25.44 7.43 86.80 0.65 26.09 16 15 O -0.59 -31.66 16.19 -3.89 -0.06 -31.72 16 16 N -0.61 -20.46 3.00 -820.41 -2.46 -22.92 16 17 C 0.11 3.19 6.64 86.50 0.57 3.76 16 18 C 0.04 0.98 4.91 86.54 0.43 1.41 16 19 N -0.53 -10.93 4.63 -864.85 -4.01 -14.93 16 20 C 0.09 1.60 2.86 45.64 0.13 1.73 16 21 H 0.09 1.83 7.95 -2.39 -0.02 1.81 16 22 C -0.16 -2.85 5.19 31.67 0.16 -2.69 16 23 C -0.12 -1.68 6.91 31.89 0.22 -1.46 16 24 C -0.15 -1.89 6.56 31.67 0.21 -1.68 16 25 C 0.11 1.59 3.32 31.32 0.10 1.69 16 26 H 0.07 1.04 6.10 -2.38 -0.01 1.02 16 27 O -0.58 -8.60 13.21 -148.98 -1.97 -10.56 16 28 C 0.05 1.04 5.24 86.38 0.45 1.49 16 29 C 0.10 2.52 4.85 86.35 0.42 2.94 16 30 C -0.13 -7.40 8.23 23.01 0.19 -7.21 16 31 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 32 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 33 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 34 H 0.14 4.45 5.62 -2.91 -0.02 4.43 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 2.40 7.04 -2.39 -0.02 2.38 16 37 H 0.03 0.75 6.30 -2.39 -0.02 0.74 16 38 H 0.11 1.89 5.86 -2.39 -0.01 1.87 16 39 H 0.06 1.24 5.72 -2.39 -0.01 1.22 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 0.82 8.06 -2.39 -0.02 0.80 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.39 2.43 9.11 -74.06 -0.67 1.76 16 46 H 0.03 0.72 7.34 -2.39 -0.02 0.70 16 47 H 0.11 1.98 8.11 -2.38 -0.02 1.96 16 48 H 0.11 3.19 4.46 -2.39 -0.01 3.18 16 49 H 0.09 2.10 7.94 -2.39 -0.02 2.08 16 50 H 0.09 5.74 6.07 -2.91 -0.02 5.72 16 Total: -1.00 -71.61 382.08 -1.36 -72.98 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.30 Total: 34.63 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.57 Total: -22.64 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -6.23 Total: -84.54 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -2.03 Total: -42.29 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -71.61 -1.36 -72.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075606321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.363 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds