Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86797 * 119.99799 * 2 1 4 4 H 1.48508 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47326 * 299.99982 * 3 2 1 6 6 H 1.48500 * 109.47187 * 60.00194 * 3 2 1 7 7 C 1.39936 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00141 * 192.48742 * 7 2 1 9 9 C 1.41438 * 120.00112 * 12.48181 * 7 2 1 10 10 C 1.40786 * 120.17476 * 26.31782 * 9 7 2 11 11 C 1.37712 * 120.03671 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41626 * 359.95415 * 11 10 9 13 13 C 1.39880 * 120.35659 * 0.04308 * 12 11 10 14 14 C 1.47887 * 120.02764 * 180.25295 * 13 12 11 15 15 O 1.21554 * 119.99843 * 40.43185 * 14 13 12 16 16 N 1.34777 * 120.00647 * 220.43590 * 14 13 12 17 17 C 1.47082 * 120.87534 * 355.63165 * 16 14 13 18 18 C 1.53696 * 108.27441 * 128.75643 * 17 16 14 19 19 N 1.46897 * 109.25900 * 54.08276 * 18 17 16 20 20 C 1.46895 * 111.00148 * 172.60828 * 19 18 17 21 21 H 1.09000 * 110.02089 * 182.43146 * 20 19 18 22 22 C 1.54265 * 110.03331 * 303.82284 * 20 19 18 23 23 C 1.54892 * 104.19993 * 142.89494 * 22 20 19 24 24 C 1.54885 * 102.74444 * 322.05823 * 23 22 20 25 25 C 1.53879 * 110.03468 * 60.98646 * 20 19 18 26 26 H 1.09004 * 110.02942 * 121.43162 * 25 20 19 27 27 O 1.42901 * 110.03107 * 0.02562 * 25 20 19 28 28 C 1.46901 * 111.26706 * 296.75254 * 19 18 17 29 29 C 1.47073 * 120.88537 * 175.91010 * 16 14 13 30 30 C 1.39030 * 119.94915 * 359.97438 * 13 12 11 31 31 H 0.96994 * 120.00593 * 359.97438 * 1 2 3 32 32 H 1.07999 * 119.98402 * 0.02562 * 10 9 7 33 33 H 1.08002 * 119.79319 * 179.97438 * 11 10 9 34 34 H 1.08001 * 119.82704 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.62812 * 248.52179 * 17 16 14 36 36 H 1.09002 * 109.63031 * 9.10423 * 17 16 14 37 37 H 1.08998 * 109.64979 * 294.07313 * 18 17 16 38 38 H 1.09000 * 109.44229 * 173.96101 * 18 17 16 39 39 H 1.09006 * 110.48485 * 261.57117 * 22 20 19 40 40 H 1.08995 * 110.48762 * 24.07899 * 22 20 19 41 41 H 1.09004 * 110.75069 * 80.37294 * 23 22 20 42 42 H 1.08995 * 110.75245 * 203.55936 * 23 22 20 43 43 H 1.09000 * 110.48224 * 156.62246 * 24 23 22 44 44 H 1.09000 * 110.48986 * 279.12741 * 24 23 22 45 45 H 0.96702 * 114.00080 * 179.97438 * 27 25 20 46 46 H 1.09002 * 109.49469 * 303.14890 * 28 19 18 47 47 H 1.09002 * 109.49508 * 183.06122 * 28 19 18 48 48 H 1.09003 * 109.62557 * 350.89398 * 29 16 14 49 49 H 1.08993 * 109.62971 * 111.28264 * 29 16 14 50 50 H 1.08000 * 120.20357 * 179.97438 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0687 -1.2230 0.2017 9 6 1.3259 -2.4222 -0.2658 10 6 0.1520 -2.4173 -1.0430 11 6 -0.5101 -3.5974 -1.2991 12 6 -0.0288 -4.7937 -0.7976 13 6 1.1361 -4.8182 -0.0234 14 6 1.6471 -6.1017 0.5043 15 8 1.6203 -7.0985 -0.1909 16 7 2.1425 -6.1664 1.7560 17 6 2.2724 -4.9550 2.5799 18 6 1.6080 -5.2233 3.9396 19 7 2.1842 -6.4392 4.5289 20 6 1.7053 -6.6359 5.9036 21 1 2.1751 -7.5173 6.3399 22 6 2.0229 -5.3907 6.7571 23 6 0.7959 -5.2475 7.6915 24 6 -0.3841 -5.6410 6.7686 25 6 0.1748 -6.7950 5.9110 26 1 -0.0988 -7.7539 6.3513 27 8 -0.3331 -6.7055 4.5783 28 6 1.9023 -7.6185 3.6995 29 6 2.5731 -7.4493 2.3321 30 6 1.8162 -3.6357 0.2447 31 1 -0.4851 0.8399 0.0004 32 1 -0.2295 -1.4876 -1.4386 33 1 -1.4105 -3.5890 -1.8954 34 1 -0.5554 -5.7137 -1.0046 35 1 3.3273 -4.7217 2.7241 36 1 1.7743 -4.1208 2.0857 37 1 0.5351 -5.3584 3.8029 38 1 1.7863 -4.3775 4.6037 39 1 2.9300 -5.5493 7.3403 40 1 2.1271 -4.5102 6.1232 41 1 0.8713 -5.9328 8.5358 42 1 0.6925 -4.2194 8.0383 43 1 -1.2337 -5.9821 7.3602 44 1 -0.6727 -4.7998 6.1384 45 1 -1.2936 -6.7987 4.5163 46 1 0.8252 -7.7203 3.5661 47 1 2.2945 -8.5098 4.1892 48 1 2.2738 -8.2650 1.6740 49 1 3.6567 -7.4525 2.4498 50 1 2.7157 -3.6497 0.8422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075606326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -29.390790 kcal Electronic energy + Delta-G solvation = -31614.584636 eV Core-core repulsion = 27607.200765 eV Total energy + Delta-G solvation = -4007.383871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.44505 -39.22971 -37.16265 -36.41331 -35.31607 -33.73237 -33.47678 -31.18896 -29.91958 -29.54090 -28.42520 -27.79206 -25.46103 -25.26545 -23.61587 -22.51783 -21.09334 -20.77597 -20.57368 -19.76072 -18.77890 -17.80959 -17.31996 -16.24393 -15.90126 -15.50466 -15.30191 -15.18902 -14.99419 -14.83753 -14.62076 -14.33117 -14.00483 -13.57164 -13.52870 -13.18791 -12.82765 -12.60422 -12.50550 -12.29678 -12.05381 -11.69301 -11.59646 -11.50795 -11.40629 -11.30313 -11.21704 -11.19183 -11.02310 -10.84706 -10.69836 -10.61883 -10.45897 -10.41199 -10.19559 -9.69165 -9.49183 -9.28072 -8.93845 -8.31740 -7.81647 -7.54791 -7.45350 -6.78215 -4.45425 2.36891 2.71714 3.05093 3.10179 3.12259 3.50081 3.66695 3.80645 3.90568 4.23836 4.35819 4.48700 4.60071 4.76416 5.04075 5.10597 5.15927 5.25411 5.32561 5.34138 5.40145 5.50297 5.55450 5.62251 5.68500 5.73681 5.78543 5.81638 5.85920 5.95452 6.00360 6.08498 6.14821 6.19778 6.34900 6.36732 6.43722 6.68136 6.76976 6.93436 6.97079 7.06717 7.16290 7.20586 7.28515 7.39334 7.47901 7.67048 7.87910 7.92746 8.04944 8.13072 8.52401 8.80104 8.82826 8.88625 10.15044 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.003678 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.697243 B = 7610.621490 C = 9095.175401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.102 3.898 10 C -0.137 4.137 11 C -0.115 4.115 12 C -0.179 4.179 13 C -0.108 4.108 14 C 0.568 3.432 15 O -0.561 6.561 16 N -0.606 5.606 17 C 0.090 3.910 18 C 0.024 3.976 19 N -0.521 5.521 20 C 0.089 3.911 21 H 0.086 0.914 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.156 4.156 25 C 0.064 3.936 26 H 0.054 0.946 27 O -0.539 6.539 28 C 0.034 3.966 29 C 0.119 3.881 30 C -0.198 4.198 31 H 0.280 0.720 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.366 0.634 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.061 0.939 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -8.067 14.964 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.099 3.901 10 C -0.157 4.157 11 C -0.133 4.133 12 C -0.199 4.199 13 C -0.111 4.111 14 C 0.360 3.640 15 O -0.441 6.441 16 N -0.339 5.339 17 C -0.032 4.032 18 C -0.104 4.104 19 N -0.244 5.244 20 C -0.021 4.021 21 H 0.104 0.896 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.194 4.194 25 C 0.004 3.996 26 H 0.072 0.928 27 O -0.346 6.346 28 C -0.094 4.094 29 C -0.004 4.004 30 C -0.218 4.218 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.215 0.785 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.080 0.920 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.636 -8.299 14.476 16.699 hybrid contribution -1.089 0.566 0.409 1.294 sum -0.453 -7.733 14.885 16.780 Atomic orbital electron populations 1.69775 1.07458 1.29052 1.36366 1.25871 0.94788 1.01260 0.92269 0.86241 0.80912 0.80929 0.78543 1.18412 1.19780 1.19993 1.19586 0.96391 0.90428 1.42699 0.90313 1.17548 0.91833 0.91847 0.88845 1.21619 0.97688 0.96889 0.99508 1.20679 0.99103 0.93034 1.00493 1.20356 0.98148 0.96888 1.04529 1.19273 0.98312 0.91355 1.02185 1.18936 0.75617 0.89089 0.80361 1.90653 1.57733 1.37914 1.57777 1.47959 1.63368 1.08374 1.14153 1.22702 1.01124 0.88921 0.90496 1.23119 1.00370 0.91954 0.94919 1.62044 1.58051 1.03686 1.00622 1.22476 0.89969 0.98828 0.90800 0.89601 1.22604 0.97823 0.98342 0.97398 1.22390 0.94576 1.01627 0.97465 1.23088 0.98248 0.99384 0.98698 1.23357 0.96229 0.96855 0.83171 0.92828 1.86854 1.26409 1.94976 1.26344 1.22716 1.01530 0.92247 0.92908 1.21550 0.98474 0.86929 0.93474 1.21329 1.02664 0.92026 1.05823 0.90922 0.85658 0.88725 0.88696 0.91920 0.85657 0.89603 0.90565 0.91098 0.89755 0.91556 0.91122 0.91800 0.90276 0.78491 0.90466 0.91497 0.89508 0.92046 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.67 10.76 55.55 0.60 -19.07 16 2 C 0.07 1.79 5.24 -17.35 -0.09 1.69 16 3 Si 0.91 17.96 29.58 -169.99 -5.03 12.93 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.56 9.07 -37.73 -0.34 -11.90 16 8 H 0.08 1.90 7.88 -52.49 -0.41 1.49 16 9 C 0.10 2.57 5.57 -106.87 -0.60 1.97 16 10 C -0.14 -3.44 8.67 -38.81 -0.34 -3.77 16 11 C -0.11 -2.65 10.01 -39.73 -0.40 -3.05 16 12 C -0.18 -4.17 9.64 -38.92 -0.38 -4.54 16 13 C -0.11 -2.51 5.34 -105.04 -0.56 -3.07 16 14 C 0.57 12.48 7.36 -12.31 -0.09 12.39 16 15 O -0.56 -13.59 16.40 5.32 0.09 -13.51 16 16 N -0.61 -11.07 3.00 -173.28 -0.52 -11.59 16 17 C 0.09 1.52 5.19 -3.36 -0.02 1.50 16 18 C 0.02 0.34 4.96 -3.46 -0.02 0.32 16 19 N -0.52 -6.63 4.66 -224.71 -1.05 -7.68 16 20 C 0.09 0.91 3.04 -66.60 -0.20 0.70 16 21 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 22 C -0.12 -1.15 6.30 -25.07 -0.16 -1.31 16 23 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 24 C -0.16 -1.31 6.55 -25.08 -0.16 -1.47 16 25 C 0.06 0.59 3.79 -25.61 -0.10 0.50 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 O -0.54 -5.86 6.38 -35.23 -0.22 -6.08 16 28 C 0.03 0.45 5.19 -3.70 -0.02 0.43 16 29 C 0.12 1.86 6.58 -3.60 -0.02 1.83 16 30 C -0.20 -4.63 7.10 -38.44 -0.27 -4.91 16 31 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 32 H 0.13 3.22 6.08 -52.49 -0.32 2.90 16 33 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.13 2.41 4.08 -51.93 -0.21 2.20 16 37 H 0.09 1.34 5.03 -49.01 -0.25 1.10 16 38 H 0.08 1.04 5.53 -51.93 -0.29 0.75 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.90 5.40 -51.93 -0.28 0.62 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 45 H 0.37 2.90 9.11 48.69 0.44 3.35 16 46 H 0.08 1.11 5.24 -51.93 -0.27 0.83 16 47 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 48 H 0.09 1.43 7.09 -51.93 -0.37 1.06 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.11 2.33 6.03 -52.49 -0.32 2.01 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -28.82 375.78 -10.88 -39.70 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.47 Total: 13.44 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -3.93 Total: -13.80 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.97 Total: -38.34 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.14 Total: -19.59 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.82 -10.88 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075606326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.311 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds