Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00275 * 2 1 4 4 H 1.48504 * 109.46864 * 239.99713 * 3 2 1 5 5 H 1.48505 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47371 * 119.99772 * 3 2 1 7 7 C 1.37878 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00042 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47309 * 179.97438 * 9 7 2 11 11 C 1.34788 * 119.99915 * 89.99783 * 10 9 7 12 12 O 1.21590 * 119.99979 * 177.80552 * 11 10 9 13 13 N 1.34775 * 119.99658 * 357.80642 * 11 10 9 14 14 C 1.40150 * 119.99571 * 183.62361 * 13 11 10 15 15 C 1.38831 * 120.02080 * 322.71203 * 14 13 11 16 16 C 1.38092 * 119.98937 * 179.71988 * 15 14 13 17 17 C 1.38716 * 120.01447 * 0.54954 * 16 15 14 18 18 O 1.35973 * 119.98723 * 179.74719 * 17 16 15 19 19 C 1.42895 * 117.00110 * 6.70724 * 18 17 16 20 20 C 1.54272 * 110.03077 * 273.51262 * 19 18 17 21 21 C 1.54963 * 104.15953 * 217.13723 * 20 19 18 22 22 C 1.54885 * 102.77854 * 37.88857 * 21 20 19 23 23 C 1.53878 * 110.03159 * 156.29709 * 19 18 17 24 24 C 1.38720 * 120.02309 * 359.72328 * 17 16 15 25 25 C 1.38085 * 120.01928 * 359.97438 * 24 17 16 26 26 C 1.46498 * 120.00258 * 269.99858 * 10 9 7 27 27 C 1.52998 * 117.49990 * 200.52973 * 26 10 9 28 28 C 1.52990 * 60.00275 * 252.51234 * 27 26 10 29 29 H 0.97003 * 120.00062 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47095 * 59.99325 * 9 7 2 31 31 H 1.08999 * 109.46939 * 299.99824 * 9 7 2 32 32 H 0.96997 * 120.00225 * 3.63304 * 13 11 10 33 33 H 1.08005 * 120.00532 * 359.96934 * 15 14 13 34 34 H 1.08004 * 119.99501 * 180.25000 * 16 15 14 35 35 H 1.08999 * 110.01555 * 34.90341 * 19 18 17 36 36 H 1.08993 * 110.48422 * 335.78751 * 20 19 18 37 37 H 1.08999 * 110.48088 * 98.42531 * 20 19 18 38 38 H 1.09001 * 110.72000 * 279.57583 * 21 20 19 39 39 H 1.08997 * 110.92201 * 156.30024 * 21 20 19 40 40 H 1.09002 * 110.48903 * 203.40319 * 22 21 20 41 41 H 1.09003 * 110.60209 * 80.81989 * 22 21 20 42 42 H 1.09001 * 110.03358 * 238.56687 * 23 19 18 43 43 H 1.08994 * 110.03431 * 359.97438 * 23 19 18 44 44 H 1.08007 * 119.98668 * 179.97438 * 24 17 16 45 45 H 1.08003 * 120.01049 * 179.97438 * 25 24 17 46 46 H 1.08996 * 115.54951 * 346.24278 * 26 10 9 47 47 H 1.09000 * 117.50081 * 0.02562 * 27 26 10 48 48 H 1.09004 * 117.49824 * 145.02221 * 27 26 10 49 49 H 1.09001 * 117.50279 * 252.51299 * 28 27 26 50 50 H 1.09001 * 117.52232 * 107.47878 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 2.6408 -4.1249 1.1678 12 8 3.3998 -5.0748 1.1682 13 7 2.2373 -3.5841 2.3345 14 6 2.7513 -4.0673 3.5456 15 6 2.9966 -5.4245 3.7039 16 6 3.5084 -5.8991 4.8954 17 6 3.7668 -5.0215 5.9381 18 8 4.2660 -5.4901 7.1129 19 6 4.6384 -6.8690 7.1555 20 6 3.4143 -7.7360 7.5159 21 6 3.9938 -8.8523 8.4212 22 6 5.0567 -8.0977 9.2577 23 6 5.6825 -7.0990 8.2623 24 6 3.5166 -3.6659 5.7826 25 6 3.0107 -3.1893 4.5895 26 6 2.6788 -4.1695 -1.2681 27 6 3.2618 -5.5839 -1.2444 28 6 4.1862 -4.3786 -1.4266 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 1.5912 -2.8607 2.3361 33 1 2.7909 -6.1086 2.8938 34 1 3.7031 -6.9545 5.0172 35 1 5.0427 -7.1763 6.1911 36 1 2.6770 -7.1471 8.0613 37 1 2.9722 -8.1643 6.6164 38 1 4.4587 -9.6338 7.8202 39 1 3.2209 -9.2711 9.0657 40 1 5.8121 -8.7903 9.6290 41 1 4.5871 -7.5671 10.0860 42 1 6.5932 -7.5188 7.8350 43 1 5.9055 -6.1588 8.7665 44 1 3.7177 -2.9832 6.5950 45 1 2.8156 -2.1339 4.4686 46 1 2.1163 -3.8714 -2.1529 47 1 3.2908 -6.1003 -0.2850 48 1 3.0826 -6.2168 -2.1137 49 1 4.6152 -4.2182 -2.4157 50 1 4.8237 -4.1013 -0.5871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076019244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -5.148492 kcal Electronic energy + Delta-G solvation = -30056.210754 eV Core-core repulsion = 26049.878109 eV Total energy + Delta-G solvation = -4006.332646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.53835 -39.92698 -38.23691 -36.66769 -35.63228 -34.59165 -33.15044 -32.09776 -30.85401 -29.14904 -28.70555 -27.62335 -27.02171 -23.33089 -22.91100 -22.74923 -21.78111 -21.48292 -21.03738 -20.21574 -19.30333 -18.33099 -17.26737 -16.89193 -16.42869 -16.08073 -15.59815 -15.42103 -15.22263 -14.65377 -14.50317 -14.36001 -14.14017 -14.00894 -13.67900 -13.30351 -13.13162 -13.02944 -12.56301 -12.37903 -12.33067 -12.15700 -11.93648 -11.59485 -11.47614 -11.40249 -11.32278 -11.21991 -10.96429 -10.94682 -10.81954 -10.72105 -10.59935 -10.51817 -10.27767 -9.71283 -9.65258 -9.36537 -9.04209 -8.71806 -8.61470 -7.67469 -7.25219 -6.24348 -4.33021 1.55888 1.67270 3.18484 3.21506 3.26514 3.27884 3.33546 3.65142 4.11008 4.23006 4.25832 4.27679 4.51209 4.58989 4.66066 4.90925 5.04608 5.08143 5.09753 5.14820 5.17326 5.28591 5.31916 5.46786 5.48584 5.55645 5.56524 5.57585 5.61552 5.69029 5.72200 5.83689 5.85880 5.89664 5.99262 6.17203 6.20607 6.24776 6.26467 6.52232 6.61432 6.68938 6.70049 6.78269 6.92264 7.04680 7.32403 7.40213 7.62494 7.70628 7.74696 7.96347 8.51371 8.78840 9.21955 9.36514 10.81352 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.002575 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.021604 B =10872.207463 C =12216.207454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.241 3.759 10 N -0.583 5.583 11 C 0.710 3.290 12 O -0.599 6.599 13 N -0.682 5.682 14 C 0.146 3.854 15 C -0.082 4.082 16 C -0.190 4.190 17 C 0.100 3.900 18 O -0.312 6.312 19 C 0.080 3.920 20 C -0.149 4.149 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.133 4.133 25 C -0.110 4.110 26 C 0.107 3.893 27 C -0.202 4.202 28 C -0.190 4.190 29 H 0.267 0.733 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.417 0.583 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.136 0.864 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.961 -13.770 13.087 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.121 3.879 10 N -0.314 5.314 11 C 0.413 3.587 12 O -0.481 6.481 13 N -0.331 5.331 14 C 0.050 3.950 15 C -0.103 4.103 16 C -0.209 4.209 17 C 0.055 3.945 18 O -0.227 6.227 19 C 0.024 3.976 20 C -0.186 4.186 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.131 4.131 26 C 0.001 3.999 27 C -0.240 4.240 28 C -0.229 4.229 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.257 0.743 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.143 0.857 47 H 0.153 0.847 48 H 0.096 0.904 49 H 0.104 0.896 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.298 -14.142 13.161 20.319 hybrid contribution 0.097 1.428 -0.384 1.482 sum 6.396 -12.714 12.776 19.125 Atomic orbital electron populations 1.69907 1.05986 1.27579 1.49484 1.24949 0.94863 0.99350 0.94619 0.86542 0.79533 0.82418 0.78927 1.20100 1.21141 1.20053 1.21479 0.93714 0.90290 1.52298 0.91974 1.19381 0.87291 0.82743 0.98489 1.46819 1.46752 1.35637 1.02150 1.15840 0.80186 0.82122 0.80525 1.90656 1.41303 1.30068 1.86053 1.42897 1.46945 1.40421 1.02866 1.17503 0.99467 0.92161 0.85819 1.21074 0.98156 0.94331 0.96697 1.21100 1.06433 0.99361 0.94036 1.18882 0.97233 0.93103 0.85279 1.86115 1.77935 1.26892 1.31726 1.23089 0.94919 0.79892 0.99716 1.22975 0.97964 0.97210 1.00480 1.22454 0.98358 0.97288 0.98043 1.22344 0.98212 0.97632 0.97854 1.22204 0.97197 1.00528 0.95988 1.20116 1.04487 0.92450 0.98209 1.20817 1.00172 0.99499 0.92629 1.21318 0.94534 0.97076 0.87013 1.23879 1.03741 0.91662 1.04701 1.23139 0.94286 1.03536 1.01923 0.92359 0.94108 0.95025 0.74320 0.84285 0.85702 0.90638 0.90190 0.90942 0.91267 0.91166 0.91347 0.91263 0.90611 0.90118 0.85325 0.84900 0.85704 0.84662 0.90361 0.89573 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 13.29 55.43 0.74 -23.14 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.71 9.39 -34.44 -0.32 -14.04 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.56 4.95 -5.20 -0.03 5.54 16 10 N -0.58 -12.25 2.83 -173.17 -0.49 -12.74 16 11 C 0.71 14.80 7.84 -86.91 -0.68 14.12 16 12 O -0.60 -12.77 9.67 5.29 0.05 -12.72 16 13 N -0.68 -13.06 5.21 -14.18 -0.07 -13.14 16 14 C 0.15 2.56 6.26 -83.61 -0.52 2.04 16 15 C -0.08 -1.36 8.67 -39.42 -0.34 -1.71 16 16 C -0.19 -2.73 8.75 -39.46 -0.35 -3.08 16 17 C 0.10 1.43 6.62 -39.23 -0.26 1.17 16 18 O -0.31 -4.05 9.70 -19.66 -0.19 -4.24 16 19 C 0.08 0.81 2.80 -25.61 -0.07 0.74 16 20 C -0.15 -1.32 6.09 -25.03 -0.15 -1.48 16 21 C -0.12 -0.86 6.91 -24.70 -0.17 -1.03 16 22 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 23 C -0.12 -1.00 6.61 -25.61 -0.17 -1.17 16 24 C -0.13 -1.91 9.98 -39.46 -0.39 -2.31 16 25 C -0.11 -1.72 9.96 -39.41 -0.39 -2.12 16 26 C 0.11 2.01 6.63 -67.93 -0.45 1.56 16 27 C -0.20 -3.46 9.65 -26.74 -0.26 -3.72 16 28 C -0.19 -3.39 9.85 -26.74 -0.26 -3.65 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.04 0.99 8.03 -51.93 -0.42 0.57 16 31 H 0.03 0.74 6.40 -51.93 -0.33 0.41 16 32 H 0.42 8.05 6.57 -40.82 -0.27 7.78 16 33 H 0.14 2.45 6.42 -52.48 -0.34 2.12 16 34 H 0.13 1.53 5.29 -52.48 -0.28 1.25 16 35 H 0.08 0.77 6.40 -51.93 -0.33 0.44 16 36 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.07 0.63 7.44 -51.93 -0.39 0.25 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.70 7.95 -51.93 -0.41 0.29 16 44 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 45 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 46 H 0.13 2.19 8.09 -51.93 -0.42 1.77 16 47 H 0.14 2.60 5.23 -52.12 -0.27 2.33 16 48 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 50 H 0.09 1.86 7.52 -51.93 -0.39 1.47 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -27.92 397.47 -11.71 -39.63 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -7.62 Total: 13.57 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -5.09 Total: -8.54 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.17 Total: -49.02 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.14 Total: -16.96 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -27.92 -11.71 -39.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076019244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.477 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds