Wall clock time and date at job start Tue Mar 31 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00382 * 2 1 4 4 H 1.48504 * 109.47237 * 270.00373 * 3 2 1 5 5 H 1.48501 * 109.47039 * 30.00101 * 3 2 1 6 6 H 1.48503 * 109.47468 * 150.00012 * 3 2 1 7 7 C 1.37886 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46909 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99952 * 270.00331 * 10 9 7 12 12 C 1.52998 * 109.47210 * 274.97587 * 11 10 9 13 13 F 1.39908 * 109.46765 * 60.00449 * 12 11 10 14 14 F 1.39896 * 109.47513 * 179.97438 * 12 11 10 15 15 F 1.39894 * 109.47340 * 300.00513 * 12 11 10 16 16 C 1.34772 * 119.99985 * 90.00019 * 10 9 7 17 17 O 1.21591 * 119.99913 * 5.58482 * 16 10 9 18 18 C 1.47544 * 120.00421 * 185.57830 * 16 10 9 19 19 C 1.39759 * 120.13926 * 55.02045 * 18 16 10 20 20 C 1.37752 * 119.95731 * 179.97438 * 19 18 16 21 21 C 1.38486 * 120.32282 * 0.07220 * 20 19 18 22 22 C 1.38595 * 120.41465 * 0.26509 * 21 20 19 23 23 C 1.38990 * 119.90194 * 359.36010 * 22 21 20 24 24 O 1.35820 * 120.86768 * 180.55068 * 23 22 21 25 25 C 1.43180 * 116.73850 * 342.97349 * 24 23 22 26 26 C 1.53464 * 108.24966 * 46.16386 * 25 24 23 27 27 O 1.36140 * 119.36843 * 179.97438 * 22 21 20 28 28 H 0.97004 * 120.00105 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47089 * 60.00436 * 9 7 2 30 30 H 1.08996 * 109.47311 * 300.00083 * 9 7 2 31 31 H 1.08997 * 109.47124 * 34.97802 * 11 10 9 32 32 H 1.09006 * 109.47336 * 154.97936 * 11 10 9 33 33 H 1.08005 * 120.02482 * 359.96813 * 19 18 16 34 34 H 1.07993 * 119.83691 * 180.02562 * 20 19 18 35 35 H 1.07999 * 119.79094 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.70449 * 165.85287 * 25 24 23 37 37 H 1.08994 * 109.70404 * 286.47220 * 25 24 23 38 38 H 1.08998 * 109.71034 * 60.01047 * 26 25 24 39 39 H 1.08999 * 109.71002 * 180.59992 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 2.6789 -4.1695 -1.2692 12 6 1.6819 -5.2147 -1.7736 13 9 0.4337 -4.6132 -1.9674 14 9 2.1361 -5.7460 -2.9854 15 9 1.5637 -6.2402 -0.8294 16 6 2.6407 -4.1250 1.1666 17 8 2.1706 -3.7327 2.2171 18 6 3.6905 -5.1618 1.1698 19 6 4.9095 -4.9281 0.5273 20 6 5.8871 -5.8985 0.5330 21 6 5.6684 -7.1077 1.1718 22 6 4.4623 -7.3573 1.8074 23 6 3.4696 -6.3846 1.8165 24 8 2.2846 -6.6042 2.4430 25 6 1.9612 -7.9645 2.7511 26 6 3.1988 -8.6232 3.3753 27 8 4.2699 -8.5535 2.4282 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.7709 -3.3704 -2.0049 32 1 3.6514 -4.6382 -1.1183 33 1 5.0848 -3.9874 0.0266 34 1 6.8285 -5.7157 0.0363 35 1 6.4407 -7.8626 1.1705 36 1 1.1327 -7.9941 3.4586 37 1 1.6848 -8.4923 1.8383 38 1 3.4783 -8.0921 4.2852 39 1 2.9816 -9.6653 3.6099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076092212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:59 Heat of formation + Delta-G solvation = -221.116539 kcal Electronic energy + Delta-G solvation = -32139.095494 eV Core-core repulsion = 27212.156179 eV Total energy + Delta-G solvation = -4926.939315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.73643 -47.29592 -47.17312 -41.38967 -39.33073 -37.47340 -37.13563 -35.26409 -32.81921 -31.34055 -30.97279 -29.24158 -28.52769 -27.10405 -24.93103 -24.15865 -23.21300 -22.31007 -21.09444 -19.64785 -18.66179 -18.19822 -18.12714 -17.65980 -17.51974 -16.73939 -16.27028 -15.84458 -15.72979 -15.37771 -15.07854 -14.79255 -14.40886 -14.35445 -14.30821 -14.13588 -14.08683 -13.66947 -13.58985 -13.39846 -13.35046 -13.15221 -12.96485 -12.40712 -12.20877 -12.09456 -11.96574 -11.89674 -11.27408 -11.19979 -11.10748 -10.97950 -10.72719 -10.61577 -10.23751 -9.76559 -9.23833 -8.63501 -8.47538 -8.14762 -7.98652 -6.09346 -4.15459 0.97529 1.23447 2.82535 2.94542 3.13112 3.27077 3.28481 3.35210 3.39108 3.49686 3.72528 4.06741 4.20133 4.34007 4.39131 4.40760 4.66316 4.66806 4.76970 4.90705 5.00750 5.04504 5.20699 5.25740 5.28506 5.31652 5.37257 5.57835 5.61634 5.95622 6.03585 6.29463 6.48811 6.77525 6.90555 7.28639 7.31799 7.39909 7.85139 8.07656 8.13563 8.73660 8.90464 9.49652 10.98962 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.004301 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.757288 B = 6508.967145 C = 7115.798311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.241 3.759 10 N -0.590 5.590 11 C 0.064 3.936 12 C 0.429 3.571 13 F -0.175 7.175 14 F -0.189 7.189 15 F -0.185 7.185 16 C 0.567 3.433 17 O -0.504 6.504 18 C -0.118 4.118 19 C -0.094 4.094 20 C -0.120 4.120 21 C -0.101 4.101 22 C 0.042 3.958 23 C 0.102 3.898 24 O -0.284 6.284 25 C 0.017 3.983 26 C 0.021 3.979 27 O -0.307 6.307 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.289 -17.652 -0.495 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.123 3.877 10 N -0.321 5.321 11 C -0.063 4.063 12 C 0.373 3.627 13 F -0.156 7.156 14 F -0.171 7.171 15 F -0.167 7.167 16 C 0.353 3.647 17 O -0.378 6.378 18 C -0.122 4.122 19 C -0.113 4.113 20 C -0.138 4.138 21 C -0.120 4.120 22 C -0.003 4.003 23 C 0.055 3.945 24 O -0.197 6.197 25 C -0.058 4.058 26 C -0.055 4.055 27 O -0.222 6.222 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.750 -17.335 0.147 19.419 hybrid contribution 0.071 0.561 -0.045 0.567 sum 8.822 -16.774 0.102 18.953 Atomic orbital electron populations 1.69936 1.06030 1.27196 1.49649 1.24928 0.94876 0.99242 0.94845 0.86475 0.79830 0.82943 0.78043 1.20549 1.21067 1.19828 1.21384 0.93386 0.90394 1.52121 0.92178 1.19562 0.87248 0.81300 0.99618 1.48081 1.46555 1.35204 1.02287 1.22833 0.95854 0.96485 0.91144 1.21626 0.83101 0.82873 0.75133 1.93218 1.44487 1.82944 1.94947 1.93144 1.88971 1.87911 1.47038 1.93165 1.96398 1.62137 1.64970 1.17841 0.81733 0.80853 0.84276 1.90795 1.56557 1.59862 1.30621 1.19525 0.97244 0.94271 1.01175 1.21148 0.91722 1.00150 0.98290 1.20806 0.99654 0.92577 1.00790 1.20504 0.94179 0.98074 0.99208 1.18758 0.94487 0.86572 1.00443 1.18755 0.85593 0.94122 0.96048 1.86479 1.33693 1.26844 1.72700 1.23693 0.98186 0.81890 1.02067 1.23644 0.86581 1.03909 0.91365 1.86282 1.51813 1.29265 1.54839 0.92562 0.93816 0.93142 0.85396 0.86441 0.84007 0.84401 0.84616 0.85895 0.90328 0.90330 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 6.20 4.99 -5.19 -0.03 6.17 16 10 N -0.59 -12.49 2.37 -176.29 -0.42 -12.91 16 11 C 0.06 1.05 5.26 -4.04 -0.02 1.03 16 12 C 0.43 7.10 3.29 37.16 0.12 7.22 16 13 F -0.17 -3.30 15.77 2.25 0.04 -3.26 16 14 F -0.19 -2.77 17.32 2.25 0.04 -2.74 16 15 F -0.19 -3.22 16.71 2.25 0.04 -3.18 16 16 C 0.57 12.35 6.50 -12.47 -0.08 12.27 16 17 O -0.50 -13.19 16.30 1.32 0.02 -13.17 16 18 C -0.12 -2.06 4.62 -104.84 -0.48 -2.54 16 19 C -0.09 -1.29 7.47 -39.19 -0.29 -1.58 16 20 C -0.12 -1.30 10.02 -39.67 -0.40 -1.70 16 21 C -0.10 -1.16 9.95 -39.36 -0.39 -1.55 16 22 C 0.04 0.58 6.49 -39.17 -0.25 0.33 16 23 C 0.10 1.68 6.50 -38.61 -0.25 1.43 16 24 O -0.28 -4.83 9.57 -38.59 -0.37 -5.20 16 25 C 0.02 0.19 7.26 37.40 0.27 0.47 16 26 C 0.02 0.19 7.26 37.40 0.27 0.47 16 27 O -0.31 -3.78 10.42 -33.01 -0.34 -4.12 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.04 1.14 6.81 -51.93 -0.35 0.79 16 30 H 0.05 1.49 7.35 -51.93 -0.38 1.10 16 31 H 0.13 1.92 8.11 -51.93 -0.42 1.50 16 32 H 0.12 1.58 4.42 -51.93 -0.23 1.35 16 33 H 0.14 1.75 7.57 -52.48 -0.40 1.35 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -34.81 346.13 -5.89 -40.70 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.86 Total: -1.08 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -1.96 Total: 8.79 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.32 Total: -38.21 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.69 Total: -22.49 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 0.11 Total: -9.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.81 -5.89 -40.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.417 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds