Wall clock time and date at job start Tue Mar 31 2020 05:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99789 * 2 1 4 4 C 1.38610 * 120.01860 * 0.27833 * 3 2 1 5 5 C 1.38793 * 119.87161 * 180.23111 * 4 3 2 6 6 N 1.39664 * 120.04952 * 179.79598 * 5 4 3 7 7 C 1.46500 * 120.00268 * 179.72096 * 6 5 4 8 8 C 1.50699 * 109.47192 * 180.02562 * 7 6 5 9 9 C 1.38328 * 119.96230 * 269.98024 * 8 7 6 10 10 C 1.38281 * 120.13505 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.06679 * 359.68445 * 10 9 8 12 12 C 1.38852 * 119.93490 * 0.58817 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.70368 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47010 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46908 * 119.99967 * 18 16 14 21 21 H 1.48504 * 109.47373 * 240.00300 * 18 16 14 22 22 C 1.38073 * 119.96534 * 89.99825 * 8 7 6 23 23 C 1.38972 * 119.90513 * 359.51674 * 5 4 3 24 24 C 1.38116 * 120.03553 * 0.23390 * 23 5 4 25 25 C 1.38214 * 120.12837 * 359.97438 * 24 23 5 26 26 N 1.48009 * 119.95480 * 180.02562 * 25 24 23 27 27 O 1.21801 * 119.99640 * 359.97438 * 26 25 24 28 28 O 1.21793 * 120.00412 * 180.02562 * 26 25 24 29 29 H 1.08993 * 109.47551 * 59.99242 * 1 2 3 30 30 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46679 * 299.99426 * 1 2 3 32 32 H 1.08004 * 120.06633 * 0.02562 * 4 3 2 33 33 H 0.97004 * 119.99543 * 359.72441 * 6 5 4 34 34 H 1.09002 * 109.46490 * 59.99969 * 7 6 5 35 35 H 1.08992 * 109.46880 * 300.00223 * 7 6 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 9 8 7 37 37 H 1.07993 * 119.96315 * 179.97438 * 10 9 8 38 38 H 1.08006 * 120.03715 * 180.31908 * 11 10 9 39 39 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 40 40 H 1.07996 * 120.03547 * 0.02562 * 22 8 7 41 41 H 1.07998 * 119.98198 * 180.25419 * 23 5 4 42 42 H 1.08001 * 119.93707 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3736 0.0058 5 6 1.9246 3.6087 0.0010 6 7 1.1679 4.7826 0.0025 7 6 1.8373 6.0857 0.0035 8 6 0.8031 7.1817 0.0058 9 6 0.3283 7.6860 -1.1916 10 6 -0.6203 8.6921 -1.1938 11 6 -1.1014 9.1921 0.0005 12 6 -0.6226 8.6920 1.2041 13 8 -1.0891 9.1857 2.3795 14 6 -1.9251 10.2413 2.3114 15 1 -2.2590 10.6045 1.3507 16 6 -2.3559 10.8606 3.4747 17 7 -1.9487 10.4185 4.6449 18 14 -3.5136 12.3236 3.3802 19 1 -3.8193 12.6218 1.9580 20 1 -4.7727 12.0058 4.1006 21 1 -2.8695 13.5058 4.0070 22 6 0.3308 7.6818 1.2029 23 6 3.3127 3.6756 0.0004 24 6 4.0608 2.5146 -0.0002 25 6 3.4317 1.2839 0.0003 26 7 4.2372 0.0422 0.0003 27 8 5.4536 0.1054 -0.0007 28 8 3.6838 -1.0427 0.0002 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2127 2.3186 0.0108 33 1 0.1990 4.7350 0.0029 34 1 2.4600 6.1748 -0.8867 35 1 2.4608 6.1731 0.8933 36 1 0.6992 7.2930 -2.1268 37 1 -0.9888 9.0840 -2.1302 38 1 -1.8461 9.9744 -0.0017 39 1 -2.2499 10.8520 5.4587 40 1 0.7024 7.2882 2.1374 41 1 3.8067 4.6360 0.0008 42 1 5.1395 2.5685 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078258799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:29 Heat of formation + Delta-G solvation = -13.286183 kcal Electronic energy + Delta-G solvation = -28058.971129 eV Core-core repulsion = 23780.619418 eV Total energy + Delta-G solvation = -4278.351712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02427 -40.54044 -39.43666 -38.58023 -37.07463 -36.26876 -35.46337 -32.51666 -32.03544 -30.78481 -30.06462 -29.20657 -27.88312 -26.42320 -25.49327 -24.96973 -22.92992 -22.08683 -21.85361 -20.92731 -19.51126 -18.67882 -18.15267 -18.01633 -17.40054 -17.38763 -16.80145 -16.14443 -16.10773 -15.46734 -15.24075 -15.03677 -14.93098 -14.49933 -14.17953 -13.98809 -13.82747 -13.58365 -13.37216 -12.99365 -12.68305 -12.57429 -12.19229 -11.93440 -11.86260 -11.65693 -11.51091 -11.35768 -11.06810 -11.01360 -10.94029 -10.92223 -10.88880 -10.61173 -10.55832 -9.56865 -9.04539 -9.03175 -8.47436 -8.14047 -7.51122 -6.62590 -4.22481 0.06465 0.83869 1.47641 1.59932 1.67959 2.07725 2.64400 2.98821 3.02191 3.07859 3.09343 3.15264 3.80723 4.15422 4.31331 4.43067 4.58309 4.63383 4.69353 4.77298 4.79264 4.90001 4.96148 5.02912 5.14934 5.25101 5.28324 5.41948 5.49642 5.59444 5.64175 5.67073 5.88239 5.91989 6.05850 6.34864 6.44925 6.61278 6.65238 6.79293 6.82332 6.95542 7.09716 7.17767 7.22516 7.51721 7.81006 7.87955 8.82663 9.48943 10.54853 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.001870 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.944962 B =14971.175293 C =15239.735870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.283 6.283 3 C 0.242 3.758 4 C -0.300 4.300 5 C 0.307 3.693 6 N -0.710 5.710 7 C 0.163 3.837 8 C -0.078 4.078 9 C -0.195 4.195 10 C -0.075 4.075 11 C -0.223 4.223 12 C 0.149 3.851 13 O -0.174 6.174 14 C -0.395 4.395 15 H 0.094 0.906 16 C 0.041 3.959 17 N -0.858 5.858 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.274 1.274 22 C -0.170 4.170 23 C -0.230 4.230 24 C 0.026 3.974 25 C -0.146 4.146 26 N 0.052 4.948 27 O -0.201 6.201 28 O -0.161 6.161 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.410 0.590 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.272 0.728 40 H 0.118 0.882 41 H 0.147 0.853 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 -12.280 -10.639 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.193 6.193 3 C 0.191 3.809 4 C -0.324 4.324 5 C 0.195 3.805 6 N -0.333 5.333 7 C 0.040 3.960 8 C -0.079 4.079 9 C -0.215 4.215 10 C -0.093 4.093 11 C -0.243 4.243 12 C 0.095 3.905 13 O -0.077 6.077 14 C -0.471 4.471 15 H 0.111 0.889 16 C -0.164 4.164 17 N -0.492 5.492 18 Si 0.767 3.233 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.190 4.190 23 C -0.253 4.253 24 C 0.006 3.994 25 C -0.235 4.235 26 N 0.563 4.437 27 O -0.406 6.406 28 O -0.377 6.377 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.165 0.835 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.164 0.836 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.448 -11.672 -10.132 16.083 hybrid contribution -1.146 0.735 -0.053 1.362 sum 3.302 -10.937 -10.185 15.305 Atomic orbital electron populations 1.23285 0.77303 1.04950 1.01981 1.86408 1.22222 1.24682 1.85969 1.18245 0.89095 0.85567 0.87962 1.20531 1.00656 0.89652 1.21603 1.17882 0.91101 0.86242 0.85293 1.45338 1.09146 1.02733 1.76098 1.20406 0.93855 0.79514 1.02222 1.19117 0.98235 0.97313 0.93213 1.20462 1.02928 1.01899 0.96204 1.20761 0.95927 0.95658 0.97001 1.21275 1.05529 1.05394 0.92064 1.19319 0.91792 0.92674 0.86696 1.83979 1.55721 1.43343 1.24648 1.21385 1.23980 1.06903 0.94819 0.88901 1.25323 0.98142 0.98830 0.94150 1.70034 1.41891 1.39753 0.97569 0.85628 0.79117 0.79659 0.78923 1.19044 1.20024 1.19985 1.20071 1.00839 1.00710 0.97365 1.20593 0.91448 0.98875 1.14355 1.20581 1.01492 0.88409 0.88900 1.20146 0.87870 0.85390 1.30067 1.43227 1.00945 1.02441 0.97054 1.94491 0.96044 1.94061 1.56052 1.94547 1.74196 1.15416 1.53569 0.91979 0.87292 0.91877 0.83502 0.75361 0.90668 0.90576 0.87488 0.87174 0.85348 0.91843 0.86374 0.83574 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.28 -3.12 8.50 -41.59 -0.35 -3.48 16 3 C 0.24 2.72 6.67 -39.25 -0.26 2.45 16 4 C -0.30 -2.80 8.88 -39.24 -0.35 -3.15 16 5 C 0.31 2.91 6.65 -83.81 -0.56 2.36 16 6 N -0.71 -6.75 5.72 -59.83 -0.34 -7.10 16 7 C 0.16 1.68 5.03 -5.19 -0.03 1.65 16 8 C -0.08 -1.10 5.25 -104.65 -0.55 -1.65 16 9 C -0.20 -2.76 9.70 -39.53 -0.38 -3.14 16 10 C -0.08 -1.19 10.04 -39.61 -0.40 -1.58 16 11 C -0.22 -4.31 9.17 -39.40 -0.36 -4.67 16 12 C 0.15 3.23 6.65 -39.11 -0.26 2.97 16 13 O -0.17 -4.60 9.76 0.05 0.00 -4.60 16 14 C -0.39 -10.33 9.49 30.89 0.29 -10.03 16 15 H 0.09 2.24 5.21 -52.49 -0.27 1.96 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -23.96 13.67 55.48 0.76 -23.20 16 18 Si 0.94 19.37 29.55 -169.99 -5.02 14.35 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 22 C -0.17 -3.06 9.65 -39.39 -0.38 -3.44 16 23 C -0.23 -2.06 9.31 -39.35 -0.37 -2.43 16 24 C 0.03 0.26 9.54 -39.63 -0.38 -0.12 16 25 C -0.15 -1.81 6.87 -79.76 -0.55 -2.36 16 26 N 0.05 0.76 4.45 34.05 0.15 0.91 16 27 O -0.20 -3.03 18.44 -29.46 -0.54 -3.57 16 28 O -0.16 -2.54 17.23 -36.50 -0.63 -3.17 16 29 H 0.06 0.32 7.67 -51.93 -0.40 -0.07 16 30 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.35 7.65 -51.93 -0.40 -0.04 16 32 H 0.15 1.06 6.30 -52.48 -0.33 0.73 16 33 H 0.41 3.82 8.48 -40.82 -0.35 3.47 16 34 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 35 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.13 2.52 5.64 -52.48 -0.30 2.22 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 40 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 41 H 0.15 1.05 6.73 -52.49 -0.35 0.70 16 42 H 0.16 1.30 7.60 -52.49 -0.40 0.90 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -31.28 368.50 -8.49 -39.77 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.44 Total: 5.57 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.63 Total: -21.06 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 0.57 Total: -29.38 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.53 Total: -14.81 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.28 -8.49 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078258799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.488 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds