Wall clock time and date at job start Tue Mar 31 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37977 * 120.05035 * 2 1 4 4 C 1.38305 * 120.17829 * 179.97438 * 3 2 1 5 5 C 1.38596 * 120.26689 * 359.97438 * 4 3 2 6 6 F 1.35099 * 119.95482 * 179.97438 * 5 4 3 7 7 C 1.38173 * 120.09421 * 359.77019 * 5 4 3 8 8 C 1.39569 * 120.04548 * 179.97438 * 2 1 3 9 9 C 1.47818 * 120.13654 * 0.02562 * 8 2 1 10 10 O 1.21579 * 119.99809 * 3.86321 * 9 8 2 11 11 N 1.34777 * 120.00387 * 183.86421 * 9 8 2 12 12 C 1.40065 * 120.00257 * 185.17146 * 11 9 8 13 13 C 1.38662 * 120.09653 * 326.43504 * 12 11 9 14 14 C 1.38253 * 120.00163 * 180.02562 * 13 12 11 15 15 C 1.38295 * 120.21204 * 359.97438 * 14 13 12 16 16 C 1.38200 * 120.20856 * 359.97438 * 15 14 13 17 17 C 1.38785 * 119.98721 * 0.02562 * 16 15 14 18 18 S 1.76200 * 120.10542 * 180.02562 * 17 16 15 19 19 C 1.81401 * 102.99920 * 359.97438 * 18 17 16 20 20 C 1.50695 * 109.46830 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00676 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99964 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00213 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99600 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46956 * 90.00393 * 24 22 20 26 26 H 1.48505 * 109.47178 * 209.99898 * 24 22 20 27 27 H 1.48496 * 109.47433 * 330.00064 * 24 22 20 28 28 H 1.08999 * 109.46796 * 262.52012 * 1 2 3 29 29 H 1.09001 * 109.46848 * 22.51968 * 1 2 3 30 30 H 1.08996 * 109.47276 * 142.51741 * 1 2 3 31 31 H 1.07997 * 119.91416 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.86585 * 180.02562 * 4 3 2 33 33 H 1.07999 * 120.08749 * 180.25875 * 7 5 4 34 34 H 0.97002 * 119.99453 * 5.16701 * 11 9 8 35 35 H 1.08000 * 120.00167 * 0.02562 * 13 12 11 36 36 H 1.08001 * 119.89068 * 180.02562 * 14 13 12 37 37 H 1.08007 * 119.89813 * 180.27943 * 15 14 13 38 38 H 1.07996 * 120.00828 * 180.02562 * 16 15 14 39 39 H 1.08996 * 109.46869 * 299.99931 * 19 18 17 40 40 H 1.09001 * 109.46687 * 59.99900 * 19 18 17 41 41 H 0.96993 * 119.99806 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1943 0.0000 4 6 3.5810 1.1974 0.0005 5 6 4.2822 0.0019 0.0016 6 9 5.6332 0.0123 0.0016 7 6 3.6016 -1.2005 0.0069 8 6 2.2058 -1.2081 0.0005 9 6 1.4708 -2.4906 0.0005 10 8 0.2571 -2.4957 -0.0709 11 7 2.1460 -3.6544 0.0797 12 6 1.4602 -4.8708 -0.0292 13 6 0.1683 -4.9870 0.4611 14 6 -0.5066 -6.1888 0.3530 15 6 0.1023 -7.2777 -0.2437 16 6 1.3892 -7.1713 -0.7363 17 6 2.0745 -5.9689 -0.6323 18 16 3.7151 -5.8296 -1.2599 19 6 4.0405 -7.4865 -1.9226 20 6 5.4292 -7.5302 -2.5061 21 1 6.0538 -6.6495 -2.4805 22 6 5.9030 -8.6950 -3.0719 23 7 7.1151 -8.7333 -3.5807 24 14 4.8230 -10.2186 -3.1155 25 1 4.0279 -10.2259 -4.3697 26 1 5.6771 -11.4324 -3.0639 27 1 3.9057 -10.2088 -1.9478 28 1 -0.3633 -0.1338 1.0189 29 1 -0.3633 0.9493 -0.3936 30 1 -0.3633 -0.8155 -0.6253 31 1 1.6574 2.1293 -0.0004 32 1 4.1167 2.1352 0.0010 33 1 4.1481 -2.1320 0.0120 34 1 3.1069 -3.6495 0.2121 35 1 -0.3107 -4.1388 0.9274 36 1 -1.5129 -6.2772 0.7351 37 1 -0.4313 -8.2128 -0.3295 38 1 1.8614 -8.0235 -1.2021 39 1 3.9595 -8.2207 -1.1211 40 1 3.3124 -7.7161 -2.7006 41 1 7.4484 -9.5528 -3.9783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078568679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:26 Heat of formation + Delta-G solvation = -25.958699 kcal Electronic energy + Delta-G solvation = -26305.621834 eV Core-core repulsion = 22384.127599 eV Total energy + Delta-G solvation = -3921.494235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.11217 -40.96555 -39.23562 -37.92911 -35.07325 -33.21469 -32.52509 -32.00213 -30.97853 -29.49516 -29.25931 -26.99674 -24.61864 -23.31558 -22.85020 -22.45803 -21.50091 -20.56021 -18.65264 -17.74719 -17.17465 -16.86034 -16.51746 -16.14594 -15.98126 -15.90311 -15.38921 -15.05511 -14.71264 -14.30955 -14.26069 -13.99948 -13.76163 -13.54341 -13.47126 -13.37629 -13.20052 -12.63647 -12.50714 -12.38439 -12.13215 -11.99227 -11.85091 -11.70293 -11.32351 -10.94625 -10.64076 -10.35721 -10.31061 -9.83393 -9.67806 -9.53161 -9.37373 -9.29961 -8.87006 -8.82159 -8.21689 -6.79753 -6.30698 -4.35249 0.33135 0.80014 1.38412 1.52771 2.15601 2.52554 2.90092 3.13022 3.19748 3.20959 3.34615 3.35849 3.85388 3.92479 4.19810 4.25152 4.37772 4.54408 4.66745 4.86430 5.00351 5.08061 5.15875 5.24436 5.38530 5.42439 5.51557 5.56290 5.60533 5.63719 5.65860 5.75636 5.95025 6.01539 6.24168 6.31579 6.37631 6.38100 6.46325 6.47923 6.55936 6.68317 7.10476 7.24479 7.28554 7.93833 8.14261 8.68888 9.23717 10.80897 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.003251 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.491365 B = 8611.711242 C =10887.333364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.030 4.030 3 C -0.104 4.104 4 C -0.122 4.122 5 C 0.088 3.912 6 F -0.134 7.134 7 C -0.113 4.113 8 C -0.112 4.112 9 C 0.563 3.437 10 O -0.512 6.512 11 N -0.656 5.656 12 C 0.147 3.853 13 C -0.104 4.104 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.121 4.121 17 C -0.098 4.098 18 S -0.129 6.129 19 C 0.033 3.967 20 C -0.522 4.522 21 H 0.085 0.915 22 C 0.084 3.916 23 N -0.886 5.886 24 Si 0.876 3.124 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.265 1.265 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.186 16.273 9.695 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.031 4.031 3 C -0.122 4.122 4 C -0.141 4.141 5 C 0.069 3.931 6 F -0.112 7.112 7 C -0.133 4.133 8 C -0.115 4.115 9 C 0.352 3.648 10 O -0.390 6.390 11 N -0.301 5.301 12 C 0.046 3.954 13 C -0.126 4.126 14 C -0.145 4.145 15 C -0.133 4.133 16 C -0.146 4.146 17 C -0.213 4.213 18 S 0.118 5.882 19 C -0.115 4.115 20 C -0.561 4.561 21 H 0.103 0.897 22 C -0.122 4.122 23 N -0.522 5.522 24 Si 0.702 3.298 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.251 0.749 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.929 17.113 9.466 23.444 hybrid contribution -0.267 -2.034 -0.136 2.056 sum -13.196 15.079 9.330 22.103 Atomic orbital electron populations 1.21210 0.89379 1.03862 1.04005 1.20116 0.97427 0.91062 0.94481 1.20931 0.92978 0.98027 1.00267 1.21381 0.95001 0.97381 1.00358 1.17476 0.77318 0.94141 1.04187 1.91550 1.28393 1.97340 1.93928 1.21389 0.93794 0.98174 0.99930 1.19481 0.92392 0.93340 1.06278 1.18158 0.87159 0.83236 0.76215 1.90680 1.13048 1.86582 1.48653 1.43388 1.12070 1.03926 1.70713 1.17121 0.93326 0.84241 1.00678 1.21173 0.93332 0.98497 0.99583 1.20959 0.99882 0.92607 1.01073 1.21046 0.94702 0.98723 0.98789 1.21139 0.95379 0.96420 1.01654 1.22007 1.00776 0.96197 1.02357 1.85205 1.07413 1.24748 1.70813 1.21730 1.02048 0.89081 0.98592 1.20382 0.96132 1.00042 1.39571 0.89689 1.24824 0.94963 0.98288 0.94077 1.69848 1.16216 1.28334 1.37848 0.86836 0.80868 0.82791 0.79289 1.19670 1.20587 1.18920 0.90599 0.92101 0.87585 0.84191 0.84133 0.83920 0.74892 0.84039 0.85936 0.86042 0.85258 0.93796 0.94243 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.87 36.01 0.32 -0.85 16 2 C -0.03 -0.29 5.91 -104.22 -0.62 -0.91 16 3 C -0.10 -0.82 9.66 -39.65 -0.38 -1.20 16 4 C -0.12 -1.02 10.02 -39.42 -0.40 -1.41 16 5 C 0.09 0.93 7.29 -39.47 -0.29 0.64 16 6 F -0.13 -1.56 17.26 2.25 0.04 -1.53 16 7 C -0.11 -1.25 9.50 -39.10 -0.37 -1.63 16 8 C -0.11 -1.29 5.87 -104.98 -0.62 -1.91 16 9 C 0.56 7.62 7.60 -12.34 -0.09 7.52 16 10 O -0.51 -7.53 10.56 5.30 0.06 -7.47 16 11 N -0.66 -9.30 4.98 -10.57 -0.05 -9.35 16 12 C 0.15 2.34 6.34 -83.45 -0.53 1.81 16 13 C -0.10 -1.53 8.71 -39.42 -0.34 -1.87 16 14 C -0.12 -1.63 10.04 -39.55 -0.40 -2.03 16 15 C -0.11 -1.57 10.04 -39.57 -0.40 -1.97 16 16 C -0.12 -2.03 9.36 -39.39 -0.37 -2.39 16 17 C -0.10 -1.73 6.12 -38.90 -0.24 -1.97 16 18 S -0.13 -2.56 20.70 -107.50 -2.23 -4.79 16 19 C 0.03 0.76 3.16 36.00 0.11 0.88 16 20 C -0.52 -14.25 9.68 -34.44 -0.33 -14.58 16 21 H 0.09 2.53 7.96 -52.49 -0.42 2.11 16 22 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 23 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 24 Si 0.88 20.21 27.47 -169.99 -4.67 15.54 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.42 8.03 -51.93 -0.42 0.00 16 30 H 0.11 1.20 5.62 -51.93 -0.29 0.91 16 31 H 0.14 0.71 8.05 -52.49 -0.42 0.28 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.14 1.50 6.45 -52.49 -0.34 1.16 16 34 H 0.41 5.42 6.01 -40.82 -0.25 5.18 16 35 H 0.14 2.00 6.08 -52.49 -0.32 1.68 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.13 2.23 5.88 -52.49 -0.31 1.92 16 39 H 0.04 0.99 6.81 -51.93 -0.35 0.64 16 40 H 0.04 0.89 7.18 -51.92 -0.37 0.52 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -30.27 358.01 -10.06 -40.33 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.34 Total: 6.70 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -5.04 Total: -19.65 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.72 Total: -34.54 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.06 Total: -7.47 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.23 Total: -4.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.27 -10.06 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.373 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds