Wall clock time and date at job start Tue Mar 31 2020 07:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28214 * 119.15279 * 2 1 4 4 C 1.30888 * 122.70929 * 179.54740 * 3 2 1 5 5 C 1.40003 * 120.01487 * 359.85740 * 4 3 2 6 6 C 1.36734 * 118.62312 * 0.31993 * 5 4 3 7 7 C 1.34680 * 119.15241 * 179.73234 * 2 1 3 8 8 O 1.22063 * 120.44745 * 0.56285 * 7 2 1 9 9 C 1.50323 * 122.05822 * 180.44549 * 5 4 3 10 10 N 1.46737 * 110.30649 * 342.65160 * 9 5 4 11 11 C 1.46897 * 110.99933 * 288.89295 * 10 9 5 12 12 C 1.52996 * 109.47202 * 306.28929 * 11 10 9 13 13 C 1.50697 * 109.47199 * 185.26482 * 12 11 10 14 14 O 1.21288 * 119.99990 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99830 * 179.97438 * 13 12 11 16 16 C 1.37105 * 119.99778 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99876 * 22.12788 * 16 15 13 18 18 C 1.38947 * 119.99886 * 202.11591 * 16 15 13 19 19 N 1.31405 * 119.99950 * 9.95440 * 18 16 15 20 20 Si 1.86802 * 119.99870 * 189.95129 * 18 16 15 21 21 H 1.48496 * 109.47060 * 90.00332 * 20 18 16 22 22 H 1.48502 * 109.47148 * 210.00234 * 20 18 16 23 23 H 1.48500 * 109.46951 * 330.00429 * 20 18 16 24 24 C 1.46495 * 120.00159 * 0.02562 * 15 13 12 25 25 C 1.47200 * 109.47475 * 83.23347 * 24 15 13 26 26 N 6.65323 * 129.84242 * 232.02693 * 2 1 3 27 27 C 1.47117 * 110.36943 * 52.39479 * 10 9 5 28 28 C 1.50771 * 118.87106 * 179.75684 * 4 3 2 29 29 H 1.09003 * 109.46912 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46826 * 119.99630 * 1 2 3 31 31 H 1.08997 * 109.46546 * 239.99753 * 1 2 3 32 32 H 1.07994 * 121.07049 * 179.79317 * 6 5 4 33 33 H 1.08999 * 109.33749 * 222.39066 * 9 5 4 34 34 H 1.09008 * 109.32640 * 102.90350 * 9 5 4 35 35 H 1.09002 * 109.46912 * 66.29260 * 11 10 9 36 36 H 1.09004 * 109.46990 * 186.28978 * 11 10 9 37 37 H 1.08996 * 109.47176 * 305.27036 * 12 11 10 38 38 H 1.09001 * 109.47100 * 65.26941 * 12 11 10 39 39 H 0.97007 * 119.99474 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.47133 * 203.22788 * 24 15 13 41 41 H 1.08998 * 109.47246 * 323.22715 * 24 15 13 42 42 H 1.08994 * 109.59325 * 168.41911 * 27 10 9 43 43 H 1.09001 * 109.70701 * 48.05103 * 27 10 9 44 44 H 1.08999 * 109.41234 * 282.99485 * 28 4 3 45 45 H 1.08997 * 109.41195 * 42.84840 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.0896 1.1197 0.0000 4 6 3.3960 1.2009 0.0087 5 6 4.1701 0.0345 0.0215 6 6 3.5323 -1.1750 0.0180 7 6 2.1211 -1.1762 0.0055 8 8 1.5035 -2.2290 0.0001 9 6 5.6727 0.0742 0.0418 10 7 6.1525 1.4000 -0.3648 11 6 5.9321 1.6222 -1.8000 12 6 6.5545 0.4731 -2.5956 13 6 6.4425 0.7643 -4.0699 14 8 5.9171 1.7903 -4.4472 15 7 6.9272 -0.1149 -4.9691 16 6 6.8249 0.1498 -6.3105 17 1 6.6995 1.1666 -6.6522 18 6 6.8828 -0.8901 -7.2302 19 7 6.8383 -2.1365 -6.8163 20 14 7.0237 -0.5162 -9.0550 21 1 8.4570 -0.4322 -9.4338 22 1 6.3684 -1.5976 -9.8338 23 1 6.3575 0.7782 -9.3479 24 6 7.5624 -1.3538 -4.5134 25 6 6.5273 -2.3639 -4.2393 26 7 5.7276 -3.1432 -4.0270 27 6 5.5021 2.4481 0.4370 28 6 4.0407 2.5638 0.0023 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3632 -0.5139 0.8900 32 1 4.0905 -2.0995 0.0242 33 1 6.0629 -0.6770 -0.6449 34 1 6.0258 -0.1438 1.0498 35 1 4.8616 1.6653 -2.0008 36 1 6.3957 2.5629 -2.0974 37 1 7.6051 0.3705 -2.3242 38 1 6.0281 -0.4537 -2.3673 39 1 6.8784 -2.8624 -7.4585 40 1 8.2347 -1.7236 -5.2875 41 1 8.1291 -1.1581 -3.6031 42 1 6.0083 3.3996 0.2744 43 1 5.5493 2.1849 1.4937 44 1 3.9938 2.9820 -1.0032 45 1 3.5093 3.2192 0.6923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078931575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:05 Heat of formation + Delta-G solvation = 51.497141 kcal Electronic energy + Delta-G solvation = -30943.133679 eV Core-core repulsion = 26770.291117 eV Total energy + Delta-G solvation = -4172.842561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.27179 -39.73455 -38.68396 -37.54602 -35.83723 -34.68780 -34.31603 -33.18120 -31.99587 -31.20933 -29.34174 -28.65706 -27.45897 -25.95356 -25.11968 -24.38402 -23.04174 -22.93355 -20.19966 -19.01941 -18.42478 -17.90340 -17.41565 -16.88879 -16.72779 -16.36489 -16.07980 -15.49521 -15.31468 -14.93764 -14.73863 -14.23765 -14.09689 -13.87369 -13.78190 -13.46308 -13.32887 -13.04041 -13.00363 -12.85262 -12.67363 -12.50506 -12.18169 -12.11742 -11.90433 -11.62460 -11.48578 -11.39031 -11.23577 -11.20343 -10.94565 -10.68360 -10.53775 -10.42263 -10.34069 -9.98557 -9.91692 -9.27962 -8.65229 -8.52000 -8.45858 -8.05659 -6.49220 -4.08301 0.39774 1.47711 2.13847 3.08936 3.20106 3.24115 3.26051 3.52153 3.64674 3.78334 3.95860 3.98149 4.11475 4.31702 4.38936 4.53869 4.78079 4.83891 4.90389 4.96373 5.01721 5.03809 5.13333 5.20675 5.30022 5.32673 5.33951 5.44181 5.48467 5.52961 5.56594 5.65041 5.67986 5.78359 5.88952 5.98282 5.99129 6.10292 6.22684 6.27788 6.60677 6.85259 6.90564 7.43138 7.54799 7.88887 8.05118 8.25341 8.73876 8.97226 9.16062 9.69288 10.55535 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.003421 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.803544 B = 8182.384984 C = 8986.598934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.347 5.347 3 N -0.226 5.226 4 C 0.074 3.926 5 C -0.061 4.061 6 C -0.188 4.188 7 C 0.477 3.523 8 O -0.536 6.536 9 C 0.077 3.923 10 N -0.523 5.523 11 C 0.065 3.935 12 C -0.139 4.139 13 C 0.460 3.540 14 O -0.575 6.575 15 N -0.445 5.445 16 C -0.307 4.307 17 H 0.106 0.894 18 C 0.030 3.970 19 N -0.888 5.888 20 Si 0.933 3.067 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.269 1.269 24 C 0.221 3.779 25 C 0.247 3.753 26 N -0.476 5.476 27 C 0.055 3.945 28 C -0.092 4.092 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.273 0.727 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 7.296 16.235 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.167 5.167 3 N -0.050 5.050 4 C -0.097 4.097 5 C -0.068 4.068 6 C -0.219 4.219 7 C 0.276 3.724 8 O -0.415 6.415 9 C -0.052 4.052 10 N -0.244 5.244 11 C -0.062 4.062 12 C -0.179 4.179 13 C 0.248 3.752 14 O -0.457 6.457 15 N -0.165 5.165 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.172 4.172 19 N -0.528 5.528 20 Si 0.759 3.241 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.194 1.194 24 C 0.093 3.907 25 C -0.071 4.071 26 N -0.156 5.156 27 C -0.073 4.073 28 C -0.133 4.133 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.181 0.819 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.585 6.369 16.303 17.693 hybrid contribution -0.160 -0.670 -1.401 1.561 sum -2.746 5.699 14.902 16.189 Atomic orbital electron populations 1.22098 0.74229 1.04808 1.04301 1.46562 1.09467 1.02734 1.57892 1.70804 1.11698 1.12109 1.10401 1.21493 0.87640 0.96796 1.03803 1.21544 1.00235 0.92718 0.92292 1.22642 0.92968 0.99855 1.06417 1.18025 0.89906 0.84025 0.80436 1.90981 1.69522 1.29175 1.51807 1.21464 0.86286 0.93887 1.03575 1.62708 1.55381 1.01197 1.05123 1.21970 0.99965 0.99673 0.84615 1.21689 1.02929 0.99145 0.94165 1.20074 0.81942 0.86130 0.87069 1.90542 1.46731 1.27511 1.80959 1.43586 1.50877 1.15737 1.06298 1.19740 1.49007 0.95230 0.79496 0.87599 1.25337 0.96378 0.94610 1.00904 1.69726 1.48931 0.98674 1.35510 0.85808 0.78457 0.78311 0.81488 1.20111 1.21022 1.19387 1.18806 0.90059 0.81333 1.00452 1.29397 0.94427 0.93744 0.89578 1.80961 1.09817 1.11337 1.13523 1.22274 0.90319 0.96683 0.98069 1.20932 0.96976 0.90655 1.04693 0.88340 0.89665 0.89788 0.81870 0.87578 0.87814 0.93571 0.88937 0.88765 0.90589 0.91582 0.84797 0.90159 0.88638 0.90016 0.88568 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.22 59.85 0.61 1.50 16 2 N -0.35 -4.85 3.62 -70.16 -0.25 -5.11 16 3 N -0.23 -3.01 10.72 33.72 0.36 -2.65 16 4 C 0.07 0.91 6.07 -82.30 -0.50 0.41 16 5 C -0.06 -0.75 5.33 -104.69 -0.56 -1.31 16 6 C -0.19 -2.67 9.78 -39.03 -0.38 -3.05 16 7 C 0.48 7.73 7.48 -15.21 -0.11 7.62 16 8 O -0.54 -10.21 17.10 4.86 0.08 -10.12 16 9 C 0.08 0.79 5.30 -5.25 -0.03 0.76 16 10 N -0.52 -5.51 5.11 -236.31 -1.21 -6.72 16 11 C 0.07 0.90 3.74 -3.83 -0.01 0.89 16 12 C -0.14 -2.18 3.71 -27.89 -0.10 -2.28 16 13 C 0.46 9.86 7.55 -10.99 -0.08 9.78 16 14 O -0.57 -14.25 15.60 5.55 0.09 -14.16 16 15 N -0.44 -10.03 2.60 -117.94 -0.31 -10.34 16 16 C -0.31 -7.75 9.31 -14.93 -0.14 -7.89 16 17 H 0.11 2.81 7.39 -52.49 -0.39 2.42 16 18 C 0.03 0.74 5.11 -17.47 -0.09 0.65 16 19 N -0.89 -22.16 9.06 55.50 0.50 -21.66 16 20 Si 0.93 19.70 29.56 -169.99 -5.03 14.68 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 C 0.22 4.24 4.90 -6.83 -0.03 4.21 16 25 C 0.25 5.35 12.86 -20.74 -0.27 5.08 16 26 N -0.48 -11.28 18.54 42.18 0.78 -10.50 16 27 C 0.06 0.45 6.03 -3.75 -0.02 0.43 16 28 C -0.09 -0.87 5.41 -27.89 -0.15 -1.02 16 29 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.11 1.15 5.70 -51.93 -0.30 0.86 16 34 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 35 H 0.05 0.73 5.44 -51.93 -0.28 0.45 16 36 H 0.09 1.33 7.95 -51.93 -0.41 0.91 16 37 H 0.09 1.23 7.42 -51.93 -0.39 0.85 16 38 H 0.08 1.22 5.71 -51.93 -0.30 0.92 16 39 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.13 2.69 6.35 -51.93 -0.33 2.36 16 41 H 0.08 1.15 6.73 -51.93 -0.35 0.80 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 44 H 0.10 1.03 6.77 -51.93 -0.35 0.67 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -34.15 368.69 -6.89 -41.04 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.60 Total: 4.19 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: -1.87 Total: 15.77 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.12 Total: -56.96 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.17 Total: -24.29 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.15 -6.89 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078931575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.542 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds