Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34819 * 117.00022 * 2 1 4 4 O 1.21555 * 119.99783 * 359.97438 * 3 2 1 5 5 C 1.46998 * 120.00331 * 179.97438 * 3 2 1 6 6 C 1.36690 * 125.16900 * 179.97438 * 5 3 2 7 7 C 1.36749 * 114.74111 * 180.02562 * 6 5 3 8 8 C 1.36656 * 114.75204 * 359.97438 * 7 6 5 9 9 C 1.47155 * 125.16480 * 180.02562 * 8 7 6 10 10 O 1.21637 * 120.00017 * 352.36674 * 9 8 7 11 11 N 1.34776 * 120.00391 * 172.36259 * 9 8 7 12 12 C 1.46502 * 119.99807 * 0.84464 * 11 9 8 13 13 C 1.50700 * 109.47145 * 82.46621 * 12 11 9 14 14 H 1.07995 * 120.00215 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99922 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99845 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99941 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47155 * 90.00341 * 17 15 13 19 19 H 1.48504 * 109.46671 * 209.99916 * 17 15 13 20 20 H 1.48495 * 109.47302 * 329.99608 * 17 15 13 21 21 C 1.39810 * 120.00166 * 180.84450 * 11 9 8 22 22 C 1.38905 * 120.07396 * 171.05422 * 21 11 9 23 23 C 1.38104 * 119.92917 * 179.80836 * 22 21 11 24 24 C 1.38285 * 120.06994 * 0.44874 * 23 22 21 25 25 C 1.38288 * 120.14803 * 359.78175 * 24 23 22 26 26 C 1.38105 * 120.07554 * 0.02562 * 25 24 23 27 27 S 1.75836 * 125.15936 * 0.02562 * 5 3 2 28 28 H 1.08994 * 109.47915 * 300.00389 * 1 2 3 29 29 H 1.09002 * 109.47093 * 60.00436 * 1 2 3 30 30 H 1.09008 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.08008 * 122.62915 * 0.02562 * 6 5 3 32 32 H 1.08007 * 122.62841 * 180.02562 * 7 6 5 33 33 H 1.08994 * 109.47329 * 202.46907 * 12 11 9 34 34 H 1.09003 * 109.47280 * 322.46453 * 12 11 9 35 35 H 0.96999 * 119.99986 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.03356 * 359.97438 * 22 21 11 37 37 H 1.07991 * 119.96529 * 180.22754 * 23 22 21 38 38 H 1.08006 * 119.92629 * 179.76379 * 24 23 22 39 39 H 1.08004 * 119.96702 * 179.97438 * 25 24 23 40 40 H 1.07996 * 120.03968 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4020 2.2207 -0.0005 5 6 3.5320 1.2783 0.0006 6 6 4.2597 2.4354 0.0001 7 6 5.6157 2.2586 0.0003 8 6 6.0227 0.9541 0.0014 9 6 7.4236 0.5033 0.0023 10 8 8.3224 1.3108 -0.1379 11 7 7.7107 -0.8042 0.1584 12 6 6.6276 -1.7791 0.3088 13 6 6.0943 -2.1512 -1.0507 14 1 6.5194 -1.7057 -1.9380 15 6 5.0630 -3.0596 -1.1618 16 7 4.5973 -3.3839 -2.3482 17 14 4.3273 -3.8296 0.3729 18 1 3.2036 -2.9890 0.8584 19 1 3.8252 -5.1899 0.0521 20 1 5.3682 -3.9223 1.4279 21 6 9.0422 -1.2302 0.1770 22 6 9.3491 -2.5404 0.5214 23 6 10.6651 -2.9590 0.5349 24 6 11.6774 -2.0729 0.2150 25 6 11.3757 -0.7666 -0.1237 26 6 10.0615 -0.3425 -0.1430 27 16 4.6185 -0.1043 0.0006 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.7998 3.4126 -0.0003 32 1 6.3108 3.0854 0.0004 33 1 7.0080 -2.6711 0.8064 34 1 5.8268 -1.3434 0.9064 35 1 3.8716 -4.0227 -2.4264 36 1 8.5593 -3.2316 0.7758 37 1 10.9041 -3.9785 0.7991 38 1 12.7061 -2.4018 0.2300 39 1 12.1687 -0.0769 -0.3726 40 1 9.8265 0.6779 -0.4072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078999946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -25.389654 kcal Electronic energy + Delta-G solvation = -27584.830739 eV Core-core repulsion = 23650.988390 eV Total energy + Delta-G solvation = -3933.842349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.45945 -40.06603 -38.10574 -36.94357 -35.99012 -35.62852 -33.06890 -30.89791 -30.45388 -29.38687 -28.31713 -27.52831 -25.26970 -23.56419 -22.69426 -21.72928 -21.53452 -20.19609 -18.71242 -17.89334 -17.58531 -17.10480 -16.96139 -16.42470 -16.18649 -15.62915 -15.14081 -15.06646 -14.59363 -14.28615 -13.96308 -13.74480 -13.38829 -13.33311 -13.05581 -12.83823 -12.79766 -12.62237 -12.54348 -12.09921 -12.02097 -11.86842 -11.58642 -11.46332 -10.95916 -10.80660 -10.69781 -10.66084 -10.53661 -10.11808 -9.74907 -9.57444 -9.21835 -9.00932 -8.55405 -8.49966 -8.00379 -7.41703 -6.63018 -4.60815 0.40140 1.69414 1.82938 1.95101 2.31641 2.39520 2.86261 2.95203 2.99336 3.05542 3.14756 3.26189 3.54883 3.91326 4.30227 4.65595 4.78760 5.09169 5.15616 5.22323 5.29886 5.31453 5.50591 5.54845 5.58990 5.69913 5.75014 5.80145 5.92711 6.02857 6.12542 6.23039 6.32316 6.46953 6.56016 6.62606 6.72583 6.80077 6.84790 6.94148 6.97025 7.56778 7.63176 7.89311 7.91359 8.38817 8.45498 8.86863 10.46323 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.004535 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.851132 B = 6173.346819 C = 7902.775605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.352 6.352 3 C 0.543 3.457 4 O -0.513 6.513 5 C -0.327 4.327 6 C -0.077 4.077 7 C -0.091 4.091 8 C -0.262 4.262 9 C 0.594 3.406 10 O -0.524 6.524 11 N -0.528 5.528 12 C 0.185 3.815 13 C -0.537 4.537 14 H 0.093 0.907 15 C 0.095 3.905 16 N -0.853 5.853 17 Si 0.839 3.161 18 H -0.252 1.252 19 H -0.270 1.270 20 H -0.256 1.256 21 C 0.172 3.828 22 C -0.152 4.152 23 C -0.101 4.101 24 C -0.157 4.157 25 C -0.104 4.104 26 C -0.170 4.170 27 S 0.412 5.588 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.276 0.724 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 1.977 6.608 6.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.269 6.269 3 C 0.388 3.612 4 O -0.404 6.404 5 C -0.446 4.446 6 C -0.110 4.110 7 C -0.125 4.125 8 C -0.385 4.385 9 C 0.385 3.615 10 O -0.405 6.405 11 N -0.246 5.246 12 C 0.062 3.938 13 C -0.581 4.581 14 H 0.111 0.889 15 C -0.115 4.115 16 N -0.486 5.486 17 Si 0.662 3.338 18 H -0.176 1.176 19 H -0.194 1.194 20 H -0.180 1.180 21 C 0.077 3.923 22 C -0.172 4.172 23 C -0.119 4.119 24 C -0.176 4.176 25 C -0.122 4.122 26 C -0.190 4.190 27 S 0.694 5.306 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.280 1.001 6.445 6.528 hybrid contribution -0.633 0.871 0.426 1.158 sum -0.353 1.872 6.871 7.130 Atomic orbital electron populations 1.23255 0.76165 1.03714 1.02402 1.86644 1.23416 1.32375 1.84450 1.19981 0.87561 0.81362 0.72286 1.90798 1.66499 1.36015 1.47041 1.25211 0.95345 1.04940 1.19110 1.20154 0.92256 0.97930 1.00696 1.20156 0.94977 0.95514 1.01815 1.24901 0.97730 0.99123 1.16722 1.17173 0.86932 0.81355 0.76069 1.90407 1.45594 1.53926 1.50593 1.45380 1.05944 1.07290 1.66033 1.20412 0.84627 0.89239 0.99536 1.21348 1.18735 1.26249 0.91734 0.88901 1.24815 0.95575 0.94959 0.96193 1.69835 1.25095 1.31086 1.22627 0.87318 0.81541 0.81076 0.83830 1.17617 1.19440 1.18003 1.17925 0.82948 0.93810 0.97597 1.20974 0.97315 0.94807 1.04090 1.20833 0.92106 0.99174 0.99834 1.21028 0.98702 0.94252 1.03609 1.21063 0.96161 0.95654 0.99356 1.22619 0.91369 1.03462 1.01532 1.86654 0.89305 0.98455 1.56173 0.91962 0.91821 0.88026 0.84147 0.83343 0.91646 0.94678 0.91304 0.85198 0.86242 0.86828 0.86398 0.80569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.57 101.05 1.07 1.54 16 2 O -0.35 -6.04 10.41 -40.82 -0.43 -6.47 16 3 C 0.54 9.95 7.94 34.28 0.27 10.22 16 4 O -0.51 -9.81 16.61 -19.31 -0.32 -10.13 16 5 C -0.33 -6.00 6.46 -36.59 -0.24 -6.24 16 6 C -0.08 -1.28 9.88 -40.68 -0.40 -1.68 16 7 C -0.09 -1.54 9.89 -40.69 -0.40 -1.94 16 8 C -0.26 -5.00 6.24 -36.54 -0.23 -5.23 16 9 C 0.59 12.09 7.52 -12.64 -0.10 11.99 16 10 O -0.52 -10.91 13.26 5.25 0.07 -10.84 16 11 N -0.53 -10.69 2.70 -116.04 -0.31 -11.01 16 12 C 0.18 3.76 3.58 -5.19 -0.02 3.74 16 13 C -0.54 -12.61 7.43 -34.44 -0.26 -12.86 16 14 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 15 C 0.09 2.25 5.04 -17.82 -0.09 2.16 16 16 N -0.85 -21.95 13.96 55.43 0.77 -21.17 16 17 Si 0.84 17.05 26.78 -169.99 -4.55 12.50 16 18 H -0.25 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 20 H -0.26 -4.84 6.54 56.52 0.37 -4.47 16 21 C 0.17 3.32 6.48 -83.73 -0.54 2.77 16 22 C -0.15 -2.63 9.30 -39.38 -0.37 -2.99 16 23 C -0.10 -1.50 10.04 -39.61 -0.40 -1.89 16 24 C -0.16 -2.22 10.04 -39.55 -0.40 -2.62 16 25 C -0.10 -1.59 10.04 -39.61 -0.40 -1.98 16 26 C -0.17 -3.11 9.01 -39.38 -0.35 -3.46 16 27 S 0.41 8.01 15.10 -107.50 -1.62 6.39 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.14 2.08 8.04 -52.48 -0.42 1.66 16 32 H 0.15 2.24 8.05 -52.48 -0.42 1.81 16 33 H 0.07 1.27 4.67 -51.93 -0.24 1.03 16 34 H 0.04 0.71 4.02 -22.76 -0.09 0.62 16 35 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.13 2.19 5.88 -52.49 -0.31 1.88 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 40 H 0.18 3.42 4.62 -55.82 -0.26 3.16 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -27.55 349.26 -7.84 -35.39 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.87 Total: 8.55 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.84 Total: -8.47 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.46 Total: -32.18 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.68 Total: -27.44 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -4.55 Total: 12.50 kcal Atomic # 16 Polarization: 8.01 SS G_CDS: -1.62 Total: 6.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.55 -7.84 -35.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.005 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds