Wall clock time and date at job start Tue Mar 31 2020 05:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29029 * 124.91402 * 2 1 4 4 C 1.31777 * 117.12472 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.75164 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47332 * 305.02918 * 5 4 3 7 7 O 1.21291 * 120.00033 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00029 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99857 * 4.73166 * 8 6 5 10 10 C 1.50699 * 109.46849 * 270.00260 * 9 8 6 11 11 H 1.07990 * 120.00452 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99593 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00219 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99959 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47380 * 89.99481 * 14 12 10 16 16 H 1.48502 * 109.47002 * 209.99658 * 14 12 10 17 17 H 1.48507 * 109.46860 * 329.99618 * 14 12 10 18 18 C 1.39920 * 119.99787 * 184.73645 * 8 6 5 19 19 C 1.38897 * 120.07571 * 67.89245 * 18 8 6 20 20 C 1.38091 * 119.92859 * 180.27348 * 19 18 8 21 21 C 1.38300 * 120.07055 * 359.51541 * 20 19 18 22 22 C 1.50703 * 119.92716 * 180.21025 * 21 20 19 23 23 C 1.38255 * 120.14390 * 0.45972 * 21 20 19 24 24 C 1.50696 * 119.96493 * 179.76443 * 23 21 20 25 25 C 1.38135 * 120.07159 * 359.79816 * 23 21 20 26 26 C 1.33636 * 114.49952 * 0.23195 * 4 3 2 27 27 S 1.70974 * 124.91844 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46775 * 90.00298 * 1 2 3 29 29 H 1.08993 * 109.47151 * 210.00040 * 1 2 3 30 30 H 1.08996 * 109.47119 * 330.00778 * 1 2 3 31 31 H 1.09002 * 109.47367 * 185.02295 * 5 4 3 32 32 H 1.09006 * 109.46317 * 65.02702 * 5 4 3 33 33 H 1.09000 * 109.46800 * 30.00398 * 9 8 6 34 34 H 1.08997 * 109.46643 * 150.00479 * 9 8 6 35 35 H 0.96990 * 120.00260 * 180.02562 * 13 12 10 36 36 H 1.07996 * 120.02954 * 359.97438 * 19 18 8 37 37 H 1.08006 * 119.95929 * 179.72430 * 20 19 18 38 38 H 1.08996 * 109.47061 * 270.25384 * 22 21 20 39 39 H 1.09002 * 109.47399 * 30.25114 * 22 21 20 40 40 H 1.08996 * 109.47328 * 150.25321 * 22 21 20 41 41 H 1.08995 * 109.48159 * 270.02741 * 24 23 21 42 42 H 1.09006 * 109.47262 * 30.03437 * 24 23 21 43 43 H 1.09009 * 109.47105 * 150.02379 * 24 23 21 44 44 H 1.07997 * 120.03704 * 179.97438 * 25 23 21 45 45 H 1.08000 * 126.04174 * 179.77170 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0581 0.0000 4 6 3.5512 0.8795 0.0005 5 6 4.5307 2.0247 0.0000 6 6 4.2379 2.9357 -1.1641 7 8 3.3240 2.6800 -1.9194 8 7 4.9922 4.0342 -1.3666 9 6 6.1595 4.2877 -0.5184 10 6 5.7429 5.1025 0.6789 11 1 4.7120 5.4019 0.7962 12 6 6.6784 5.4666 1.6242 13 7 7.9340 5.1024 1.4812 14 14 6.1620 6.4759 3.1088 15 1 5.7654 5.5655 4.2128 16 1 7.2984 7.3238 3.5504 17 1 5.0116 7.3411 2.7432 18 6 4.6602 4.9324 -2.3867 19 6 3.5008 5.6917 -2.2956 20 6 3.1732 6.5732 -3.3069 21 6 4.0033 6.7077 -4.4048 22 6 3.6451 7.6740 -5.5044 23 6 5.1585 5.9537 -4.4983 24 6 6.0574 6.0997 -5.6990 25 6 5.4891 5.0663 -3.4927 26 6 3.9354 -0.4005 -0.0039 27 16 2.4857 -1.4019 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 5.5449 1.6354 -0.0894 32 1 4.4368 2.5834 0.9313 33 1 6.5786 3.3386 -0.1841 34 1 6.9100 4.8360 -1.0878 35 1 8.5919 5.3581 2.1463 36 1 2.8537 5.5893 -1.4371 37 1 2.2694 7.1606 -3.2387 38 1 3.0355 7.1652 -6.2510 39 1 3.0842 8.5095 -5.0854 40 1 4.5565 8.0465 -5.9720 41 1 5.7508 5.3935 -6.4706 42 1 5.9839 7.1158 -6.0866 43 1 7.0879 5.8954 -5.4083 44 1 6.3914 4.4774 -3.5665 45 1 4.9545 -0.7580 -0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079000320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:34 Heat of formation + Delta-G solvation = 28.062818 kcal Electronic energy + Delta-G solvation = -27389.453442 eV Core-core repulsion = 23691.480723 eV Total energy + Delta-G solvation = -3697.972719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.18241 -39.46127 -38.12923 -35.21184 -33.18768 -32.72440 -32.11945 -31.39633 -29.39771 -27.76415 -27.41905 -26.97169 -25.44631 -23.17183 -22.81554 -21.60472 -20.96420 -19.50466 -18.60069 -17.21828 -16.77147 -16.52191 -15.80507 -15.39803 -15.14456 -14.89029 -14.71925 -14.39165 -14.08138 -13.96260 -13.83043 -13.44597 -13.00668 -12.87663 -12.71264 -12.61336 -12.40953 -12.35918 -12.26597 -12.07475 -11.77319 -11.71797 -11.58381 -11.27006 -11.12746 -11.10801 -10.87973 -10.77874 -10.62798 -10.21076 -9.81769 -9.37797 -9.23607 -9.11970 -8.59909 -8.48351 -8.39361 -8.23708 -7.53045 -6.21229 -4.28361 0.90730 1.53197 1.76958 1.86173 1.87757 3.03492 3.22052 3.29166 3.31510 3.38102 3.88599 4.17596 4.24576 4.33202 5.04807 5.10024 5.12376 5.19195 5.31408 5.33446 5.35287 5.37341 5.43881 5.46006 5.60872 5.65116 5.68683 5.83722 5.83945 5.86139 5.95417 5.98590 6.06502 6.11120 6.18432 6.26746 6.41461 6.51982 6.70838 6.87636 6.98264 7.03166 7.16043 7.30543 7.68520 7.77745 8.00352 8.04393 8.22130 8.75984 9.00144 9.39510 10.85549 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.007098 B = 0.004289 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.867983 B = 6527.363973 C = 9156.063031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.050 3.950 3 N -0.441 5.441 4 C 0.102 3.898 5 C -0.063 4.063 6 C 0.528 3.472 7 O -0.542 6.542 8 N -0.564 5.564 9 C 0.239 3.761 10 C -0.537 4.537 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.179 3.821 19 C -0.106 4.106 20 C -0.110 4.110 21 C -0.105 4.105 22 C -0.110 4.110 23 C -0.083 4.083 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.259 4.259 27 S 0.084 5.916 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 -6.483 -7.444 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.229 4.229 3 N -0.155 5.155 4 C -0.030 4.030 5 C -0.105 4.105 6 C 0.316 3.684 7 O -0.419 6.419 8 N -0.293 5.293 9 C 0.121 3.879 10 C -0.575 4.575 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.529 5.529 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C 0.087 3.913 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.106 4.106 22 C -0.166 4.166 23 C -0.084 4.084 24 C -0.168 4.168 25 C -0.141 4.141 26 C -0.398 4.398 27 S 0.338 5.662 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.517 -7.197 -7.718 13.561 hybrid contribution 0.699 1.299 1.139 1.864 sum -7.819 -5.899 -6.578 11.798 Atomic orbital electron populations 1.20399 0.85514 1.03812 1.03723 1.27004 1.01623 0.90495 1.03826 1.66015 1.04534 1.30943 1.14047 1.19826 0.89921 0.93438 0.99802 1.20271 0.97090 0.92796 1.00349 1.20179 0.81482 0.81258 0.85440 1.90661 1.30713 1.73571 1.46949 1.45910 1.30590 1.20944 1.31810 1.19564 0.81714 0.97719 0.88950 1.21452 0.95621 1.34423 1.06052 0.91955 1.24910 0.94682 0.95790 0.98213 1.69910 1.01535 1.45713 1.35762 0.86520 0.78352 0.80264 0.82560 1.20404 1.21030 1.19726 1.17486 0.94134 0.91415 0.88219 1.21200 0.97249 0.95336 0.98803 1.20772 0.99202 0.99103 0.93741 1.19600 0.95264 0.99019 0.96672 1.20773 1.01588 0.97535 0.96738 1.19465 0.95708 0.96925 0.96281 1.20800 0.98470 1.02008 0.95537 1.21030 1.00541 0.99674 0.92818 1.26710 1.02822 0.95488 1.14751 1.83672 0.98638 1.13759 1.70170 0.89774 0.90442 0.89361 0.87358 0.85756 0.94065 0.94288 0.92469 0.86320 0.86415 0.91750 0.92031 0.91521 0.91605 0.91421 0.91751 0.86196 0.80605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.46 36.01 0.38 -0.41 16 2 C 0.05 0.74 7.39 -13.45 -0.10 0.64 16 3 N -0.44 -8.19 9.68 -8.05 -0.08 -8.27 16 4 C 0.10 1.82 5.64 -84.23 -0.47 1.35 16 5 C -0.06 -1.19 4.86 -29.03 -0.14 -1.33 16 6 C 0.53 11.48 7.49 -10.99 -0.08 11.40 16 7 O -0.54 -12.95 15.20 5.55 0.08 -12.87 16 8 N -0.56 -12.43 2.51 -114.74 -0.29 -12.72 16 9 C 0.24 5.66 4.88 -5.19 -0.03 5.64 16 10 C -0.54 -13.91 9.16 -34.44 -0.32 -14.23 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 14 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.18 3.79 4.75 -83.69 -0.40 3.39 16 19 C -0.11 -2.14 9.55 -39.39 -0.38 -2.52 16 20 C -0.11 -1.86 9.69 -39.61 -0.38 -2.25 16 21 C -0.11 -1.65 5.88 -104.59 -0.62 -2.26 16 22 C -0.11 -1.27 9.60 36.01 0.35 -0.93 16 23 C -0.08 -1.35 5.88 -104.66 -0.62 -1.97 16 24 C -0.11 -1.38 9.60 36.00 0.35 -1.04 16 25 C -0.12 -2.29 9.34 -39.39 -0.37 -2.66 16 26 C -0.26 -3.82 11.07 29.12 0.32 -3.49 16 27 S 0.08 1.06 23.18 -107.50 -2.49 -1.43 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.11 1.82 7.14 -51.93 -0.37 1.45 16 32 H 0.12 2.47 7.92 -51.93 -0.41 2.05 16 33 H 0.04 0.97 6.47 -51.93 -0.34 0.63 16 34 H 0.04 0.98 7.86 -51.93 -0.41 0.58 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 37 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 40 H 0.07 0.69 5.94 -51.93 -0.31 0.38 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.72 5.94 -51.93 -0.31 0.41 16 43 H 0.06 0.77 8.09 -51.92 -0.42 0.35 16 44 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -31.83 391.91 -10.09 -41.91 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.33 Total: 4.36 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.60 Total: -9.02 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.37 Total: -44.46 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.83 -10.09 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079000320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.973 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds