Wall clock time and date at job start Tue Mar 31 2020 07:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47376 * 239.99748 * 2 1 3 5 5 C 1.39887 * 120.00138 * 85.00175 * 4 2 1 6 6 C 1.38939 * 120.35549 * 359.97438 * 5 4 2 7 7 C 1.37261 * 119.46069 * 180.11067 * 6 5 4 8 8 C 1.40586 * 121.58930 * 359.81237 * 7 6 5 9 9 C 1.37798 * 118.82717 * 0.09254 * 8 7 6 10 10 C 1.38175 * 120.35682 * 180.02562 * 5 4 2 11 11 C 1.49534 * 125.18029 * 180.43901 * 9 8 7 12 12 C 1.49688 * 115.74543 * 35.82371 * 11 9 8 13 13 C 1.50978 * 113.38875 * 282.36096 * 12 11 9 14 14 C 1.48634 * 111.91194 * 73.59779 * 13 12 11 15 15 O 1.21301 * 116.42466 * 144.35656 * 14 13 12 16 16 N 1.30258 * 127.15088 * 324.32857 * 14 13 12 17 17 C 1.50704 * 109.46795 * 119.99478 * 2 1 3 18 18 O 1.21287 * 119.99803 * 119.99956 * 17 2 1 19 19 N 1.34772 * 120.00040 * 300.00124 * 17 2 1 20 20 C 1.46497 * 120.00270 * 0.02562 * 19 17 2 21 21 C 1.46503 * 119.99759 * 179.97438 * 19 17 2 22 22 C 1.50697 * 109.46750 * 90.00425 * 21 19 17 23 23 H 1.07995 * 120.00732 * 359.97438 * 22 21 19 24 24 C 1.37888 * 119.99798 * 179.97438 * 22 21 19 25 25 N 1.31509 * 119.99863 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99744 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47550 * 60.00195 * 26 24 22 28 28 H 1.48503 * 109.46761 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47492 * 300.00001 * 26 24 22 30 30 H 1.08998 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47292 * 300.00530 * 1 2 3 32 32 H 1.09008 * 109.46989 * 60.00037 * 1 2 3 33 33 H 0.97000 * 119.99854 * 264.99935 * 4 2 1 34 34 H 1.07998 * 120.27197 * 0.13960 * 6 5 4 35 35 H 1.08000 * 119.20811 * 179.78280 * 7 6 5 36 36 H 1.07997 * 119.27469 * 0.05602 * 10 5 4 37 37 H 1.08994 * 108.34292 * 274.11517 * 11 9 8 38 38 H 1.09000 * 108.14319 * 157.37440 * 11 9 8 39 39 H 1.09002 * 108.68206 * 161.39016 * 12 11 9 40 40 H 1.09004 * 108.67975 * 43.32742 * 12 11 9 41 41 H 1.08995 * 108.99442 * 194.22217 * 13 12 11 42 42 H 1.08994 * 108.99796 * 313.05113 * 13 12 11 43 43 H 0.97005 * 111.86110 * 189.18652 * 16 14 13 44 44 H 1.09000 * 109.47434 * 90.00025 * 20 19 17 45 45 H 1.09000 * 109.47554 * 209.99633 * 20 19 17 46 46 H 1.08996 * 109.47439 * 330.00302 * 20 19 17 47 47 H 1.09004 * 109.47183 * 209.99870 * 21 19 17 48 48 H 1.08997 * 109.47632 * 330.00166 * 21 19 17 49 49 H 0.97001 * 120.00210 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1520 0.0071 -2.4011 6 6 1.8233 1.3552 -2.4721 7 6 1.9593 2.0214 -3.6645 8 6 2.4285 1.3736 -4.8206 9 6 2.7557 0.0371 -4.7469 10 6 2.6115 -0.6371 -3.5339 11 6 3.2750 -0.7867 -5.8817 12 6 4.1899 -0.0801 -6.8327 13 6 3.4650 0.8173 -7.8067 14 6 2.9640 2.0548 -7.1534 15 8 2.9896 3.0665 -7.8221 16 7 2.4999 2.1722 -5.9420 17 6 2.0322 -0.7103 1.2306 18 8 2.7295 -1.6965 1.1194 19 7 1.7066 -0.2498 2.4546 20 6 0.8639 0.9410 2.5889 21 6 2.1944 -0.9407 3.6508 22 6 3.5221 -0.3576 4.0612 23 1 3.9590 0.4467 3.4882 24 6 4.1790 -0.8512 5.1685 25 7 3.6472 -1.8310 5.8661 26 14 5.8250 -0.1289 5.6768 27 1 5.6612 1.3171 5.9719 28 1 6.3195 -0.8292 6.8895 29 1 6.8033 -0.3011 4.5730 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 2.2491 -1.6318 -1.1525 34 1 1.4640 1.8748 -1.5961 35 1 1.6992 3.0683 -3.7159 36 1 2.8653 -1.6854 -3.4789 37 1 2.4241 -1.1673 -6.4467 38 1 3.8098 -1.6400 -5.4648 39 1 4.7512 -0.8256 -7.3961 40 1 4.8922 0.5237 -6.2579 41 1 4.1473 1.0922 -8.6111 42 1 2.6201 0.2735 -8.2290 43 1 2.1027 3.0441 -5.7903 44 1 -0.1840 0.6427 2.6225 45 1 1.1215 1.4667 3.5084 46 1 1.0270 1.5997 1.7359 47 1 1.4764 -0.8150 4.4612 48 1 2.3152 -2.0020 3.4337 49 1 4.1095 -2.1785 6.6449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079030632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:44 Heat of formation + Delta-G solvation = -31.063625 kcal Electronic energy + Delta-G solvation = -29858.807013 eV Core-core repulsion = 25785.924692 eV Total energy + Delta-G solvation = -4072.882321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.32230 -39.89946 -39.02610 -36.68388 -35.59964 -35.06858 -34.40153 -32.74894 -31.47089 -31.13651 -28.42669 -27.56972 -27.22264 -26.23685 -24.61301 -23.87368 -22.94092 -22.15639 -21.14216 -19.64284 -18.76106 -18.12164 -17.64807 -17.14278 -16.58559 -16.18497 -15.90572 -15.59846 -15.29369 -15.01206 -14.84419 -14.61493 -14.24356 -14.17162 -13.87615 -13.76454 -13.56934 -13.50446 -13.06802 -12.91748 -12.64739 -12.39020 -12.25470 -12.07891 -11.96163 -11.75404 -11.59736 -11.49587 -11.42935 -11.22669 -11.11088 -10.97159 -10.92815 -10.63724 -10.23336 -10.21102 -9.73593 -9.45461 -9.03261 -8.90621 -8.50255 -7.80314 -7.15809 -6.11547 -4.16777 1.16239 1.20964 2.48875 2.91215 3.19405 3.23212 3.27506 3.32199 3.36280 3.69612 3.89800 4.20086 4.38605 4.40456 4.45764 4.53034 4.65745 4.79526 4.87020 5.03372 5.08683 5.11187 5.16265 5.22786 5.24415 5.29368 5.41533 5.47454 5.58108 5.62318 5.65949 5.67773 5.75859 5.79152 5.82989 5.89094 5.98355 6.06273 6.18569 6.22227 6.48831 6.53165 6.89243 7.22889 7.32298 7.38543 7.41068 7.76186 7.80136 7.83852 8.13966 8.24561 8.76650 8.91894 9.48481 10.96513 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.002125 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.721165 B =13174.119178 C =13619.501589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.130 3.870 3 H 0.098 0.902 4 N -0.722 5.722 5 C 0.216 3.784 6 C -0.165 4.165 7 C -0.108 4.108 8 C 0.099 3.901 9 C -0.057 4.057 10 C -0.177 4.177 11 C -0.082 4.082 12 C -0.120 4.120 13 C -0.135 4.135 14 C 0.523 3.477 15 O -0.563 6.563 16 N -0.638 5.638 17 C 0.501 3.499 18 O -0.537 6.537 19 N -0.595 5.595 20 C 0.078 3.922 21 C 0.246 3.754 22 C -0.529 4.529 23 H 0.056 0.944 24 C 0.062 3.938 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.394 0.606 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.034 0.966 48 H 0.044 0.956 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 5.235 -21.776 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 H 0.116 0.884 4 N -0.352 5.352 5 C 0.111 3.889 6 C -0.188 4.188 7 C -0.129 4.129 8 C 0.003 3.997 9 C -0.060 4.060 10 C -0.200 4.200 11 C -0.119 4.119 12 C -0.158 4.158 13 C -0.174 4.174 14 C 0.311 3.689 15 O -0.443 6.443 16 N -0.275 5.275 17 C 0.286 3.714 18 O -0.414 6.414 19 N -0.327 5.327 20 C -0.066 4.066 21 C 0.127 3.873 22 C -0.568 4.568 23 H 0.075 0.925 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.202 1.202 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.227 0.773 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.062 0.938 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.608 4.905 -21.921 23.415 hybrid contribution 0.822 0.366 0.698 1.138 sum -5.786 5.271 -21.224 22.621 Atomic orbital electron populations 1.22475 0.93946 1.03514 1.03402 1.20760 0.94911 0.97293 0.85024 0.88431 1.44499 1.72117 1.13037 1.05581 1.17597 0.93748 0.91395 0.86139 1.20428 1.07082 0.93167 0.98120 1.20903 1.01200 0.99471 0.91316 1.16725 1.06406 0.90813 0.85784 1.18744 1.00893 0.91058 0.95318 1.20531 1.08250 1.00281 0.90983 1.19671 0.99485 0.98133 0.94579 1.20467 0.98739 0.99355 0.97198 1.21074 1.02547 0.94263 0.99550 1.19087 0.77277 0.91626 0.80894 1.90828 1.56390 1.36675 1.60388 1.42112 1.56674 1.18699 1.10062 1.20248 0.81242 0.85343 0.84522 1.90671 1.37901 1.26845 1.85975 1.48095 1.49345 1.28157 1.07130 1.21854 0.93909 0.88053 1.02760 1.19328 0.94342 0.93684 0.79959 1.21363 1.04852 1.19269 1.11317 0.92526 1.24937 0.97985 0.94918 0.96214 1.69913 1.39088 1.25922 1.18337 0.86548 0.83805 0.79065 0.77954 1.20198 1.21116 1.20165 0.91835 0.89990 0.91592 0.75237 0.85283 0.85787 0.85737 0.90762 0.90020 0.90006 0.91386 0.87769 0.88346 0.77283 0.93064 0.90527 0.92264 0.94777 0.93791 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.09 37.16 0.34 -1.53 16 2 C 0.13 1.75 1.88 -69.08 -0.13 1.62 16 3 H 0.10 1.20 5.77 -51.93 -0.30 0.90 16 4 N -0.72 -9.47 5.13 -53.42 -0.27 -9.75 16 5 C 0.22 2.50 6.63 -83.95 -0.56 1.94 16 6 C -0.17 -1.69 8.87 -39.68 -0.35 -2.04 16 7 C -0.11 -0.99 9.51 -39.05 -0.37 -1.36 16 8 C 0.10 0.96 6.65 -84.43 -0.56 0.39 16 9 C -0.06 -0.54 5.69 -104.86 -0.60 -1.14 16 10 C -0.18 -1.85 9.26 -39.12 -0.36 -2.22 16 11 C -0.08 -0.59 5.23 -30.08 -0.16 -0.75 16 12 C -0.12 -0.79 5.28 -29.39 -0.16 -0.95 16 13 C -0.13 -0.98 5.63 -29.88 -0.17 -1.14 16 14 C 0.52 5.40 7.51 -13.93 -0.10 5.30 16 15 O -0.56 -7.81 17.43 5.54 0.10 -7.71 16 16 N -0.64 -5.99 4.79 -11.82 -0.06 -6.05 16 17 C 0.50 9.59 7.14 -10.99 -0.08 9.51 16 18 O -0.54 -12.60 15.42 5.55 0.09 -12.51 16 19 N -0.60 -11.68 2.86 -182.96 -0.52 -12.20 16 20 C 0.08 1.09 8.80 59.85 0.53 1.62 16 21 C 0.25 6.16 5.16 -5.19 -0.03 6.13 16 22 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 23 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 24 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 25 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 26 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.79 4.53 -51.93 -0.24 0.55 16 32 H 0.07 0.60 7.77 -51.92 -0.40 0.19 16 33 H 0.41 5.79 7.81 -40.82 -0.32 5.47 16 34 H 0.13 1.17 6.23 -52.49 -0.33 0.84 16 35 H 0.12 0.86 7.69 -52.49 -0.40 0.46 16 36 H 0.12 1.19 7.77 -52.49 -0.41 0.78 16 37 H 0.07 0.47 7.94 -51.93 -0.41 0.06 16 38 H 0.08 0.53 7.63 -51.93 -0.40 0.14 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 41 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.10 0.57 7.97 -51.93 -0.41 0.16 16 43 H 0.39 3.37 7.44 -40.82 -0.30 3.07 16 44 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 45 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 46 H 0.06 0.65 6.01 -51.93 -0.31 0.34 16 47 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 48 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 49 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -34.32 390.55 -9.29 -43.61 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.05 Total: 5.41 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.18 Total: 2.12 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.12 Total: -53.26 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.18 Total: -20.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.32 -9.29 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079030632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.547 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds