Wall clock time and date at job start Tue Mar 31 2020 07:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47227 * 120.00200 * 2 1 3 5 5 C 1.39885 * 120.00067 * 275.00228 * 4 2 1 6 6 C 1.38940 * 120.36390 * 359.97438 * 5 4 2 7 7 C 1.37262 * 119.47348 * 179.77596 * 6 5 4 8 8 C 1.40579 * 121.58645 * 0.30678 * 7 6 5 9 9 C 1.37814 * 118.82594 * 359.92424 * 8 7 6 10 10 C 1.38181 * 120.36381 * 179.72274 * 5 4 2 11 11 C 1.49422 * 125.19685 * 179.42679 * 9 8 7 12 12 C 1.49672 * 115.79765 * 324.46072 * 11 9 8 13 13 C 1.50975 * 113.47618 * 77.54195 * 12 11 9 14 14 C 1.48642 * 111.90546 * 286.50185 * 13 12 11 15 15 O 1.21291 * 116.43065 * 215.62561 * 14 13 12 16 16 N 1.30274 * 127.14654 * 35.60094 * 14 13 12 17 17 C 1.50706 * 109.46913 * 240.00627 * 2 1 3 18 18 O 1.21281 * 119.99660 * 239.99632 * 17 2 1 19 19 N 1.34771 * 120.00094 * 59.99917 * 17 2 1 20 20 C 1.46501 * 120.00308 * 359.97438 * 19 17 2 21 21 C 1.46506 * 119.99594 * 179.97438 * 19 17 2 22 22 C 1.50699 * 109.46928 * 90.00049 * 21 19 17 23 23 H 1.08003 * 119.99963 * 0.02562 * 22 21 19 24 24 C 1.37873 * 119.99865 * 179.97438 * 22 21 19 25 25 N 1.31514 * 120.00518 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99987 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46948 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47174 * 120.00320 * 26 24 22 29 29 H 1.48497 * 109.47378 * 240.00235 * 26 24 22 30 30 H 1.09000 * 109.46579 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47310 * 299.99576 * 1 2 3 32 32 H 1.09003 * 109.47197 * 60.00227 * 1 2 3 33 33 H 0.97001 * 119.99902 * 95.00338 * 4 2 1 34 34 H 1.08000 * 120.26226 * 359.75762 * 6 5 4 35 35 H 1.08001 * 119.20560 * 180.32497 * 7 6 5 36 36 H 1.08000 * 119.26885 * 359.88801 * 10 5 4 37 37 H 1.09003 * 108.20327 * 202.82503 * 11 9 8 38 38 H 1.08995 * 108.07239 * 85.99276 * 11 9 8 39 39 H 1.09004 * 108.68550 * 316.50969 * 12 11 9 40 40 H 1.09001 * 108.57848 * 198.50284 * 12 11 9 41 41 H 1.09000 * 108.99471 * 165.87690 * 13 12 11 42 42 H 1.09002 * 108.92515 * 47.08054 * 13 12 11 43 43 H 0.96998 * 111.85243 * 170.62175 * 16 14 13 44 44 H 1.08999 * 109.46532 * 269.99942 * 20 19 17 45 45 H 1.09000 * 109.46877 * 29.99967 * 20 19 17 46 46 H 1.09000 * 109.47251 * 150.00072 * 20 19 17 47 47 H 1.09004 * 109.47073 * 209.99877 * 21 19 17 48 48 H 1.09000 * 109.47212 * 329.99960 * 21 19 17 49 49 H 0.96992 * 120.00316 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1520 0.0071 2.4011 6 6 1.8242 1.3555 2.4720 7 6 1.9578 2.0212 3.6649 8 6 2.4260 1.3732 4.8213 9 6 2.7550 0.0370 4.7472 10 6 2.6064 -0.6382 3.5353 11 6 3.2758 -0.7859 5.8804 12 6 4.1853 -0.0780 6.8353 13 6 3.4565 0.8157 7.8097 14 6 2.9515 2.0521 7.1572 15 8 2.9726 3.0632 7.8268 16 7 2.4892 2.1692 5.9449 17 6 2.0323 -0.7103 -1.2306 18 8 2.7296 -1.6964 -1.1194 19 7 1.7067 -0.2498 -2.4546 20 6 0.8640 0.9411 -2.5890 21 6 2.1956 -0.9400 -3.6508 22 6 1.2034 -1.9974 -4.0613 23 1 0.2989 -2.1407 -3.4886 24 6 1.4497 -2.7813 -5.1684 25 7 2.5508 -2.6066 -5.8661 26 14 0.2202 -4.0925 -5.6768 27 1 -0.9268 -4.0878 -4.7336 28 1 -0.2676 -3.8078 -7.0502 29 1 0.8773 -5.4239 -5.6511 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 1.4673 1.8757 1.5954 35 1 1.6968 3.0679 3.7164 36 1 2.8556 -1.6877 3.4816 37 1 3.8147 -1.6369 5.4638 38 1 2.4227 -1.1671 6.4415 39 1 4.8881 0.5284 6.2638 40 1 4.7465 -0.8239 7.3982 41 1 4.1371 1.0922 8.6149 42 1 2.6138 0.2670 8.2304 43 1 2.0861 3.0386 5.7946 44 1 -0.1838 0.6426 -2.6225 45 1 1.0272 1.5997 -1.7359 46 1 1.1217 1.4667 -3.5084 47 1 2.3165 -0.2211 -4.4612 48 1 3.1559 -1.4076 -3.4336 49 1 2.7243 -3.1583 -6.6447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079030636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:49 Heat of formation + Delta-G solvation = -31.047141 kcal Electronic energy + Delta-G solvation = -29820.093836 eV Core-core repulsion = 25747.212230 eV Total energy + Delta-G solvation = -4072.881607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.33452 -39.90337 -39.03514 -36.69351 -35.61181 -35.07321 -34.40264 -32.75016 -31.48552 -31.12922 -28.42357 -27.58433 -27.23093 -26.24677 -24.59437 -23.85139 -22.94611 -22.20099 -21.15275 -19.65182 -18.75732 -18.13173 -17.65003 -17.14746 -16.61693 -16.20375 -15.92410 -15.60602 -15.24807 -14.98904 -14.82287 -14.59139 -14.25198 -14.20871 -13.95395 -13.80575 -13.58759 -13.48773 -13.01793 -12.91628 -12.65672 -12.38183 -12.16943 -12.08829 -11.97343 -11.74533 -11.60871 -11.50857 -11.45049 -11.30152 -11.10252 -10.98650 -10.87890 -10.65894 -10.23586 -10.22207 -9.70328 -9.46269 -9.03894 -8.91438 -8.51452 -7.80353 -7.16580 -6.12198 -4.17226 1.14988 1.19823 2.47658 2.90081 3.15074 3.24192 3.27157 3.32313 3.36100 3.68090 3.90454 4.18997 4.37448 4.39443 4.44722 4.52019 4.64660 4.80196 4.85690 5.02173 5.07617 5.10742 5.18503 5.21615 5.23647 5.28746 5.41577 5.46333 5.57605 5.64886 5.66137 5.71117 5.75217 5.81234 5.81864 5.88364 5.98633 6.07251 6.20285 6.23534 6.47807 6.52213 6.88698 7.22552 7.32035 7.37771 7.40948 7.75842 7.79115 7.83371 8.13447 8.23875 8.76401 8.91736 9.48034 10.96000 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.001982 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.238258 B =14123.510071 C =14634.418190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.131 3.869 3 H 0.097 0.903 4 N -0.722 5.722 5 C 0.217 3.783 6 C -0.166 4.166 7 C -0.108 4.108 8 C 0.098 3.902 9 C -0.056 4.056 10 C -0.177 4.177 11 C -0.082 4.082 12 C -0.120 4.120 13 C -0.135 4.135 14 C 0.523 3.477 15 O -0.562 6.562 16 N -0.638 5.638 17 C 0.501 3.499 18 O -0.537 6.537 19 N -0.596 5.596 20 C 0.080 3.920 21 C 0.245 3.755 22 C -0.526 4.526 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.411 0.589 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.393 0.607 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.044 0.956 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 8.873 21.829 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 H 0.114 0.886 4 N -0.353 5.353 5 C 0.111 3.889 6 C -0.189 4.189 7 C -0.129 4.129 8 C 0.002 3.998 9 C -0.060 4.060 10 C -0.201 4.201 11 C -0.119 4.119 12 C -0.157 4.157 13 C -0.174 4.174 14 C 0.311 3.689 15 O -0.443 6.443 16 N -0.276 5.276 17 C 0.287 3.713 18 O -0.414 6.414 19 N -0.328 5.328 20 C -0.064 4.064 21 C 0.126 3.874 22 C -0.565 4.565 23 H 0.076 0.924 24 C -0.142 4.142 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.227 0.773 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.052 0.948 48 H 0.062 0.938 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.387 8.603 21.981 23.645 hybrid contribution -0.832 -0.811 -0.727 1.370 sum -2.218 7.792 21.254 22.746 Atomic orbital electron populations 1.22466 0.93802 1.03794 1.03299 1.20756 0.95111 0.97020 0.84998 0.88565 1.44525 1.72036 1.13101 1.05588 1.17602 0.93734 0.91382 0.86148 1.20423 1.07148 0.93183 0.98131 1.20898 1.01192 0.99473 0.91314 1.16723 1.06461 0.90850 0.85740 1.18733 1.00862 0.91032 0.95340 1.20539 1.08343 1.00230 0.90982 1.19658 0.99514 0.98155 0.94585 1.20461 0.98737 0.99359 0.97174 1.21076 1.02525 0.94294 0.99553 1.19087 0.77292 0.91588 0.80899 1.90825 1.56399 1.36667 1.60368 1.42109 1.56515 1.19011 1.09930 1.20243 0.81432 0.85166 0.84506 1.90669 1.38535 1.26209 1.85975 1.48092 1.49490 1.28025 1.07147 1.21847 0.95246 0.87505 1.01786 1.19361 0.96111 0.92025 0.79914 1.21427 1.05927 1.17927 1.11246 0.92392 1.24944 0.95628 0.97330 0.96261 1.69933 1.24818 1.40171 1.18344 0.86435 0.81117 0.81577 0.78239 1.19818 1.20920 1.20847 0.91657 0.91680 0.89924 0.75162 0.85298 0.85799 0.85730 0.89976 0.90753 0.91407 0.90019 0.87760 0.88334 0.77290 0.92515 0.92396 0.91149 0.94779 0.93792 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.09 37.16 0.34 -1.69 16 2 C 0.13 1.76 1.88 -69.08 -0.13 1.63 16 3 H 0.10 1.11 5.77 -51.93 -0.30 0.81 16 4 N -0.72 -9.45 5.13 -53.42 -0.27 -9.73 16 5 C 0.22 2.45 6.63 -83.94 -0.56 1.90 16 6 C -0.17 -1.65 8.87 -39.68 -0.35 -2.00 16 7 C -0.11 -0.96 9.51 -39.05 -0.37 -1.33 16 8 C 0.10 0.93 6.65 -84.44 -0.56 0.37 16 9 C -0.06 -0.53 5.69 -104.91 -0.60 -1.12 16 10 C -0.18 -1.83 9.26 -39.12 -0.36 -2.19 16 11 C -0.08 -0.58 5.22 -30.14 -0.16 -0.74 16 12 C -0.12 -0.76 5.27 -29.40 -0.15 -0.92 16 13 C -0.13 -0.95 5.63 -29.88 -0.17 -1.12 16 14 C 0.52 5.29 7.51 -13.92 -0.10 5.19 16 15 O -0.56 -7.68 17.43 5.55 0.10 -7.58 16 16 N -0.64 -5.83 4.79 -11.82 -0.06 -5.89 16 17 C 0.50 9.57 7.14 -10.99 -0.08 9.49 16 18 O -0.54 -12.57 15.42 5.56 0.09 -12.48 16 19 N -0.60 -11.67 2.86 -182.95 -0.52 -12.19 16 20 C 0.08 1.12 8.85 59.85 0.53 1.65 16 21 C 0.24 6.13 5.20 -5.19 -0.03 6.10 16 22 C -0.53 -14.40 9.39 -34.44 -0.32 -14.72 16 23 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 26 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 27 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.63 7.78 -51.93 -0.40 0.23 16 32 H 0.08 0.89 4.53 -51.93 -0.24 0.65 16 33 H 0.41 5.88 7.81 -40.82 -0.32 5.56 16 34 H 0.13 1.12 6.24 -52.49 -0.33 0.79 16 35 H 0.12 0.82 7.69 -52.49 -0.40 0.41 16 36 H 0.12 1.18 7.77 -52.49 -0.41 0.77 16 37 H 0.08 0.52 7.64 -51.93 -0.40 0.13 16 38 H 0.07 0.47 7.93 -51.93 -0.41 0.06 16 39 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 42 H 0.10 0.56 7.97 -51.93 -0.41 0.15 16 43 H 0.39 3.27 7.45 -40.82 -0.30 2.97 16 44 H 0.06 0.76 6.95 -51.93 -0.36 0.39 16 45 H 0.06 0.60 6.01 -51.93 -0.31 0.29 16 46 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 47 H 0.03 0.86 7.89 -51.93 -0.41 0.45 16 48 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 49 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -34.17 390.32 -9.28 -43.45 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.03 Total: 5.37 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -3.17 Total: 2.07 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.12 Total: -53.03 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.18 Total: -20.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.17 -9.28 -43.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079030636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.401 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds