Wall clock time and date at job start Tue Mar 31 2020 05:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.46658 * 2 1 4 4 C 1.38131 * 120.03154 * 265.25209 * 3 2 1 5 5 C 1.38264 * 120.06535 * 180.29891 * 4 3 2 6 6 C 1.38302 * 120.13984 * 359.72725 * 5 4 3 7 7 C 1.38087 * 120.07238 * 359.97438 * 6 5 4 8 8 C 1.38839 * 120.03354 * 85.00504 * 3 2 1 9 9 N 1.39945 * 120.07289 * 359.97033 * 8 3 2 10 10 C 1.34770 * 120.00030 * 154.92309 * 9 8 3 11 11 O 1.21592 * 120.00069 * 354.33331 * 10 9 8 12 12 N 1.34780 * 119.99992 * 174.06910 * 10 9 8 13 13 C 1.46503 * 119.99875 * 180.27369 * 12 10 9 14 14 C 1.50693 * 109.47154 * 89.99469 * 13 12 10 15 15 H 1.08001 * 120.00378 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00020 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00247 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99755 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46916 * 89.99663 * 18 16 14 20 20 H 1.48496 * 109.47045 * 209.99640 * 18 16 14 21 21 H 1.48500 * 109.47105 * 330.00032 * 18 16 14 22 22 C 1.46494 * 119.99734 * 0.26461 * 12 10 9 23 23 C 1.53006 * 109.47230 * 90.00875 * 22 12 10 24 24 C 1.52995 * 109.47255 * 179.97438 * 23 22 12 25 25 F 1.39900 * 109.47179 * 59.99554 * 24 23 22 26 26 F 1.39904 * 109.46831 * 179.97438 * 24 23 22 27 27 F 1.39897 * 109.47056 * 299.99490 * 24 23 22 28 28 H 1.09003 * 109.46784 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47334 * 299.99419 * 1 2 3 30 30 H 1.08996 * 109.47663 * 60.00333 * 1 2 3 31 31 H 1.09004 * 109.46922 * 240.00236 * 2 1 3 32 32 H 1.08997 * 109.47241 * 119.99994 * 2 1 3 33 33 H 1.08002 * 119.97426 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.93098 * 179.74127 * 5 4 3 35 35 H 1.07998 * 119.96180 * 180.02562 * 6 5 4 36 36 H 1.07993 * 120.03973 * 180.02562 * 7 6 5 37 37 H 0.97002 * 119.99751 * 334.91785 * 9 8 3 38 38 H 1.08998 * 109.46658 * 209.99590 * 13 12 10 39 39 H 1.08993 * 109.47136 * 329.99058 * 13 12 10 40 40 H 0.96998 * 120.00061 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.47007 * 210.00497 * 22 12 10 42 42 H 1.08996 * 109.47933 * 330.00425 * 22 12 10 43 43 H 1.09000 * 109.46381 * 299.99581 * 23 22 12 44 44 H 1.09004 * 109.46882 * 59.99267 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3560 2.0397 -1.1918 5 6 2.8227 3.3412 -1.1921 6 6 2.9616 4.0294 -0.0005 7 6 2.6338 3.4185 1.1937 8 6 2.1652 2.1110 1.1974 9 7 1.8325 1.4888 2.4060 10 6 2.3993 1.9041 3.5560 11 8 3.2746 2.7478 3.5325 12 7 1.9923 1.3880 4.7327 13 6 2.6043 1.8438 5.9833 14 6 1.8324 3.0213 6.5203 15 1 0.9718 3.3928 5.9840 16 6 2.2243 3.6238 7.6970 17 7 1.5510 4.6518 8.1655 18 14 3.7125 2.9808 8.6251 19 1 4.9327 3.6812 8.1499 20 1 3.5342 3.2278 10.0784 21 1 3.8537 1.5223 8.3844 22 6 0.9379 0.3714 4.7610 23 6 1.5675 -1.0195 4.6611 24 6 0.4662 -2.0812 4.6913 25 9 -0.4018 -1.8835 3.6122 26 9 1.0420 -3.3529 4.5993 27 9 -0.2483 -1.9779 5.8896 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2486 1.5050 -2.1240 34 1 3.0791 3.8216 -2.1248 35 1 3.3260 5.0461 -0.0041 36 1 2.7421 3.9565 2.1238 37 1 1.1940 0.7587 2.4159 38 1 2.5861 1.0341 6.7128 39 1 3.6361 2.1406 5.7958 40 1 1.8269 5.0759 8.9930 41 1 0.3807 0.4518 5.6945 42 1 0.2618 0.5255 3.9201 43 1 2.1245 -1.0998 3.7276 44 1 2.2435 -1.1736 5.5021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079072241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:02 Heat of formation + Delta-G solvation = -156.509891 kcal Electronic energy + Delta-G solvation = -31363.662088 eV Core-core repulsion = 26673.076084 eV Total energy + Delta-G solvation = -4690.586004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.20419 -47.71662 -47.65848 -40.65982 -38.78878 -36.01434 -34.84845 -33.80963 -32.87893 -31.76357 -29.85175 -29.17416 -27.75322 -25.58317 -23.93162 -23.38127 -22.56734 -21.89715 -20.80379 -19.53667 -18.73225 -18.57473 -17.91606 -17.63561 -16.90042 -16.87024 -15.93610 -15.39160 -15.18650 -14.77455 -14.73041 -14.54756 -14.13114 -14.11974 -13.96493 -13.88219 -13.84040 -13.74248 -13.72052 -13.59386 -13.35145 -13.15201 -12.64846 -12.48297 -12.17112 -12.04294 -11.89773 -11.69914 -11.59210 -11.39995 -11.09352 -10.99454 -10.88839 -10.61292 -10.35444 -10.16718 -9.66721 -9.39702 -8.65801 -8.59543 -8.15104 -7.70854 -6.15169 -4.15250 1.46486 1.58851 2.56930 2.95624 3.24367 3.29612 3.32875 3.45243 3.64188 3.87742 3.93474 4.05140 4.27239 4.33075 4.71529 4.75079 4.80789 4.83562 5.11813 5.13803 5.16623 5.19288 5.27295 5.36948 5.48108 5.51310 5.62242 5.74146 5.79077 5.83063 5.90290 6.07065 6.16907 6.31294 6.49309 6.60812 6.68602 6.74726 6.80232 7.05864 7.27888 7.31471 7.50916 8.20882 8.38611 8.86802 8.93754 9.43712 10.97967 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.007646 B = 0.005005 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.073571 B = 5593.592273 C = 8638.903780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C -0.126 4.126 4 C -0.099 4.099 5 C -0.148 4.148 6 C -0.102 4.102 7 C -0.128 4.128 8 C 0.182 3.818 9 N -0.691 5.691 10 C 0.701 3.299 11 O -0.556 6.556 12 N -0.598 5.598 13 C 0.229 3.771 14 C -0.533 4.533 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.894 5.894 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.110 3.890 23 C -0.194 4.194 24 C 0.457 3.543 25 F -0.185 7.185 26 F -0.186 7.186 27 F -0.178 7.178 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.401 0.599 38 H 0.033 0.967 39 H 0.042 0.958 40 H 0.266 0.734 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 -13.108 -15.219 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.130 4.130 4 C -0.118 4.118 5 C -0.167 4.167 6 C -0.121 4.121 7 C -0.149 4.149 8 C 0.086 3.914 9 N -0.339 5.339 10 C 0.403 3.597 11 O -0.431 6.431 12 N -0.332 5.332 13 C 0.109 3.891 14 C -0.572 4.572 15 H 0.094 0.906 16 C -0.128 4.128 17 N -0.532 5.532 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.016 4.016 23 C -0.234 4.234 24 C 0.402 3.598 25 F -0.166 7.166 26 F -0.167 7.167 27 F -0.160 7.160 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.238 0.762 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.188 -12.371 -14.913 19.413 hybrid contribution 0.201 -0.777 0.638 1.025 sum -0.987 -13.149 -14.275 19.433 Atomic orbital electron populations 1.21795 0.94786 1.01801 1.02329 1.20440 0.96033 0.92777 1.02718 1.19512 1.05222 0.96133 0.92097 1.20700 0.99581 0.95075 0.96445 1.21018 1.02611 0.95172 0.97919 1.21055 0.99249 0.99812 0.91969 1.21612 0.99876 0.93251 1.00127 1.17431 0.98374 0.91704 0.83933 1.43006 1.47000 1.38812 1.05075 1.15899 0.81881 0.81894 0.79982 1.90883 1.33063 1.34022 1.85155 1.47185 1.39113 1.40578 1.06351 1.19701 0.94853 0.95626 0.78911 1.21290 1.14702 1.13468 1.07709 0.90602 1.24832 0.96455 0.94523 0.96973 1.69887 1.39957 1.21704 1.21622 0.86879 0.83783 0.79803 0.79359 1.19840 1.20998 1.19082 1.21349 0.90454 0.84517 1.05250 1.23531 0.97107 0.94640 1.08115 1.20470 0.83332 0.82338 0.73636 1.93178 1.72367 1.94961 1.56117 1.93189 1.84362 1.43222 1.95951 1.93218 1.80216 1.96039 1.46499 0.92200 0.92810 0.92242 0.90749 0.91640 0.86248 0.86497 0.86039 0.83004 0.76204 0.94898 0.94018 0.92447 0.87501 0.90633 0.87564 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.81 37.16 0.36 -0.95 16 2 C -0.08 -0.80 5.44 -27.88 -0.15 -0.95 16 3 C -0.13 -1.57 5.15 -104.43 -0.54 -2.11 16 4 C -0.10 -1.13 9.68 -39.61 -0.38 -1.51 16 5 C -0.15 -1.75 10.04 -39.55 -0.40 -2.14 16 6 C -0.10 -1.41 10.04 -39.61 -0.40 -1.81 16 7 C -0.13 -2.15 8.72 -39.39 -0.34 -2.49 16 8 C 0.18 2.80 6.41 -83.69 -0.54 2.26 16 9 N -0.69 -10.60 4.82 -14.22 -0.07 -10.67 16 10 C 0.70 13.60 8.08 -86.92 -0.70 12.90 16 11 O -0.56 -12.96 13.09 5.28 0.07 -12.89 16 12 N -0.60 -11.19 2.46 -180.81 -0.44 -11.63 16 13 C 0.23 5.17 4.23 -5.20 -0.02 5.15 16 14 C -0.53 -14.54 9.94 -34.44 -0.34 -14.88 16 15 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 18 Si 0.87 20.71 27.47 -169.99 -4.67 16.04 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.27 -5.83 6.54 56.52 0.37 -5.47 16 22 C 0.11 1.54 4.89 -4.04 -0.02 1.52 16 23 C -0.19 -2.13 5.58 -26.73 -0.15 -2.28 16 24 C 0.46 4.93 3.16 37.16 0.12 5.04 16 25 F -0.18 -1.95 16.80 2.25 0.04 -1.91 16 26 F -0.19 -2.05 17.32 2.25 0.04 -2.01 16 27 F -0.18 -2.17 16.80 2.25 0.04 -2.14 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.51 7.44 -51.93 -0.39 0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.06 0.64 7.26 -51.93 -0.38 0.26 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.15 3.02 5.79 -52.49 -0.30 2.71 16 37 H 0.40 5.03 4.57 -40.82 -0.19 4.84 16 38 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 39 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.11 1.58 7.73 -51.93 -0.40 1.18 16 42 H 0.08 0.92 6.11 -51.93 -0.32 0.60 16 43 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -32.06 374.12 -7.85 -39.91 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.67 Total: 5.92 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -3.60 Total: -0.25 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.26 Total: -48.32 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.89 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.11 Total: -6.06 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.06 -7.85 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079072241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.596 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds